Efficient Monte Carlo methods for simulating diffusion-reaction processes in complex systems
暂无分享,去创建一个
[1] D. Grebenkov,et al. Optical trapping microrheology in cultured human cells , 2012, The European Physical Journal E.
[2] Joseph A. Helpern,et al. Random walk with barriers , 2010, Nature physics.
[3] Sapoval. General formulation of Laplacian transfer across irregular surfaces. , 1994, Physical review letters.
[4] S. Taylor. DIFFUSION PROCESSES AND THEIR SAMPLE PATHS , 1967 .
[5] Paul T. Callaghan,et al. Pulsed gradient spin echo nuclear magnetic resonance for molecules diffusing between partially reflecting rectangular barriers , 1994 .
[6] K. Jacobson,et al. Single-particle tracking: applications to membrane dynamics. , 1997, Annual review of biophysics and biomolecular structure.
[7] G. G. Stokes. "J." , 1890, The New Yale Book of Quotations.
[8] Multiscaling analysis of large-scale off-lattice DLA , 1991 .
[9] Salvatore Torquato,et al. Efficient simulation technique to compute effective properties of heterogeneous media , 1989 .
[10] Denis S. Grebenkov,et al. Geometrical Structure of Laplacian Eigenfunctions , 2012, SIAM Rev..
[11] A. Caspi,et al. Enhanced diffusion in active intracellular transport. , 2000, Physical review letters.
[12] K. M. Kolwankar,et al. Brownian flights over a fractal nest and first-passage statistics on irregular surfaces. , 2006, Physical review letters.
[13] G. Bond,et al. Heterogeneous Catalysis: Principles and Applications , 1974 .
[14] Pabitra N. Sen,et al. Time dependent diffusion coefficient in a disordered medium , 1996 .
[15] G. Milstein. Numerical Integration of Stochastic Differential Equations , 1994 .
[16] G. Weiss. Overview of theoretical models for reaction rates , 1986 .
[17] H P Huinink,et al. Random-walk simulations of NMR dephasing effects due to uniform magnetic-field gradients in a pore. , 2002, Physical review. E, Statistical, nonlinear, and soft matter physics.
[19] J. C. Jaeger,et al. Conduction of Heat in Solids , 1952 .
[20] B. Sapoval,et al. Passivation of irregular surfaces accessed by diffusion , 2008, Proceedings of the National Academy of Sciences.
[21] William S. Price,et al. NMR Studies of Translational Motion: Principles and Applications , 2009 .
[22] John Crank,et al. The Mathematics Of Diffusion , 1956 .
[23] J. Klafter,et al. The dynamical foundation of fractal stream chemistry: The origin of extremely long retention times , 2001, cond-mat/0202326.
[24] M. E. Muller. Some Continuous Monte Carlo Methods for the Dirichlet Problem , 1956 .
[25] G. Weiss. Aspects and Applications of the Random Walk , 1994 .
[26] D. Grebenkov,et al. Kinetics of Active Surface-Mediated Diffusion in Spherically Symmetric Domains , 2012, 1206.2756.
[27] T. Waigh,et al. First-passage-probability analysis of active transport in live cells. , 2012, Physical review. E, Statistical, nonlinear, and soft matter physics.
[28] S. Havlin,et al. Diffusion in disordered media , 2002 .
[29] Partha P. Mitra,et al. Time-Dependent Diffusion Coefficient of Fluids in Porous Media as a Probe of Surface-to-Volume Ratio , 1993 .
[30] Per Linse,et al. The NMR Self-Diffusion Method Applied to Restricted Diffusion. Simulation of Echo Attenuation from Molecules in Spheres and between Planes , 1993 .
[31] Donald E. Marshall,et al. Harmonic Measure: Jordan Domains , 2005 .
[32] E. R. Rang. Narrow Escape. , 1965, Science.
[33] Feller William,et al. An Introduction To Probability Theory And Its Applications , 1950 .
[34] Z. Schuss,et al. The narrow escape problem for diffusion in cellular microdomains , 2007, Proceedings of the National Academy of Sciences.
[35] Y. Chiew,et al. Computer simulation of diffusion‐controlled reactions in dispersions of spherical sinks , 1989 .
[36] L. Sander,et al. Diffusion-limited aggregation, a kinetic critical phenomenon , 1981 .
[37] Lee,et al. Random-walk simulation of diffusion-controlled processes among static traps. , 1989, Physical review. B, Condensed matter.
[38] Denis S Grebenkov,et al. A fast random walk algorithm for computing the pulsed-gradient spin-echo signal in multiscale porous media. , 2011, Journal of magnetic resonance.
[39] H. Pfeifer. Principles of Nuclear Magnetic Resonance Microscopy , 1992 .
[40] D. Grebenkov. Searching for partially reactive sites: Analytical results for spherical targets. , 2010, The Journal of chemical physics.
[41] R. Bryant,et al. Extreme-values statistics and dynamics of water at protein interfaces. , 2011, The journal of physical chemistry. B.
[42] C. Sparrow. The Fractal Geometry of Nature , 1984 .
[43] K. Brownstein,et al. Importance of classical diffusion in NMR studies of water in biological cells , 1979 .
[44] M. Tachiya,et al. Theory of diffusion‐controlled reactions on spherical surfaces and its application to reactions on micellar surfaces , 1981 .
[45] Noam Agmon,et al. Residence times in diffusion processes , 1984 .
[46] L. Sander,et al. Diffusion-limited aggregation , 1983 .
[47] A Mohoric,et al. Computer simulation of the spin-echo spatial distribution in the case of restricted self-diffusion. , 2001, Journal of magnetic resonance.
[48] O. Bénichou,et al. Optimizing intermittent reaction paths. , 2008, Physical chemistry chemical physics : PCCP.
[49] P. V. von Hippel,et al. Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory. , 1981, Biochemistry.
[50] K. Svoboda,et al. Time-dependent diffusion of water in a biological model system. , 1994, Proceedings of the National Academy of Sciences of the United States of America.
[51] D. Grebenkov. SCALING PROPERTIES OF THE SPREAD HARMONIC MEASURES , 2006 .
[52] M. Freidlin. Functional Integration And Partial Differential Equations , 1985 .
[53] Katja Lindenberg,et al. Subdiffusive target problem: survival probability. , 2007, Physical review. E, Statistical, nonlinear, and soft matter physics.
[54] Pabitra N. Sen,et al. Time-dependent diffusion coefficient as a probe of geometry , 2004 .
[55] Joachim O Rädler,et al. Temporal analysis of active and passive transport in living cells. , 2008, Physical review letters.
[56] D. Grebenkov,et al. Optimal reaction time for surface-mediated diffusion. , 2010, Physical review letters.
[57] David A Weitz,et al. Intracellular transport by active diffusion. , 2009, Trends in cell biology.
[58] E. Cox,et al. Physical nature of bacterial cytoplasm. , 2006, Physical review letters.
[59] P. A. Prince,et al. Lévy flight search patterns of wandering albatrosses , 1996, Nature.
[60] D. Grebenkov,et al. Interfacial territory covered by surface-mediated diffusion. , 2012, Physical review. E, Statistical, nonlinear, and soft matter physics.
[61] James W. Kirchner,et al. implications for contaminant transport in catchments , 2000 .
[62] D. Grebenkov. Residence times and other functionals of reflected Brownian motion. , 2007, Physical review. E, Statistical, nonlinear, and soft matter physics.
[63] Arak M. Mathai,et al. Mittag-Leffler Functions and Their Applications , 2009, J. Appl. Math..
[64] D. Grebenkov,et al. Mean First-Passage Time of Surface-Mediated Diffusion in Spherical Domains , 2011, 1101.5043.
[65] D. Grebenkov. What makes a boundary less accessible. , 2005, Physical review letters.
[66] Denis S. Grebenkov,et al. Partially Reflected Brownian Motion: A Stochastic Approach to Transport Phenomena , 2006, math/0610080.
[67] David Holcman,et al. Survival probability of diffusion with trapping in cellular neurobiology. , 2005, Physical review. E, Statistical, nonlinear, and soft matter physics.
[68] Denis S. Grebenkov,et al. A fast random walk algorithm for computing diffusion-weighted NMR signals in multi-scale porous media: A feasibility study for a Menger sponge , 2013 .
[69] Weihua Deng,et al. ANALYSIS OF SINGLE PARTICLE TRAJECTORIES: FROM NORMAL TO ANOMALOUS DIFFUSION ∗ , 2009 .
[70] Tom Chou,et al. Multistage adsorption of diffusing macromolecules and viruses. , 2007, The Journal of chemical physics.
[71] Karl K. Sabelfeld. Monte Carlo Methods in Boundary Value Problems. , 1991 .
[72] M. Moreau,et al. Intermittent search strategies , 2011, 1104.0639.
[73] Antoine Lejay,et al. A Random Walk on Rectangles Algorithm , 2006 .
[74] Denis S Grebenkov,et al. Subdiffusion in a bounded domain with a partially absorbing-reflecting boundary. , 2010, Physical review. E, Statistical, nonlinear, and soft matter physics.
[75] R. Bass. Diffusions and Elliptic Operators , 1997 .
[76] P. V. von Hippel,et al. Diffusion-driven mechanisms of protein translocation on nucleic acids. 2. The Escherichia coli repressor--operator interaction: equilibrium measurements. , 1981, Biochemistry.
[77] Denis S. Grebenkov,et al. NMR survey of reflected brownian motion , 2007 .
[78] R. Metzler,et al. In vivo anomalous diffusion and weak ergodicity breaking of lipid granules. , 2010, Physical review letters.
[79] J. Bouchaud,et al. Anomalous diffusion in disordered media: Statistical mechanisms, models and physical applications , 1990 .
[80] S. Redner. A guide to first-passage processes , 2001 .
[81] Thomas C. Halsey,et al. Diffusion‐Limited Aggregation: A Model for Pattern Formation , 2000 .
[82] J. Klafter,et al. The random walk's guide to anomalous diffusion: a fractional dynamics approach , 2000 .
[83] K. Sabelfeld,et al. Random Walks on Boundary for Solving PDEs , 1994 .
[84] R. Eisenberg,et al. Narrow Escape, Part I , 2004, math-ph/0412048.
[85] A. Lejay,et al. An Efficient Algorithm to Simulate a Brownian Motion Over Irregular Domains , 2010 .
[86] Multifractal properties of the harmonic measure on Koch boundaries in two and three dimensions. , 2005, Physical review. E, Statistical, nonlinear, and soft matter physics.
[87] M. Weiss,et al. Elucidating the origin of anomalous diffusion in crowded fluids. , 2009, Physical review letters.