Stereoselective pH Responsive Peptide Dendrimers for siRNA Transfection.

Transfecting nucleic acids into cells is an essential procedure in biological research usually performed using nonviral transfection reagents. Unfortunately, most transfection reagents have polymeric or undisclosed structures and require nonstandard synthetic procedures. Herein we report peptide dendrimers accessible as pure products from standard building blocks by solid-phase peptide synthesis and acting as nontoxic single component siRNA transfection reagents for a variety of cell lines with equal or better performance than the gold standard lipofectamine L2000. Structure-activity relationships and mechanistic studies illuminate their transfection mechanism in unprecedented detail. Stereoselective dendrimer aggregation via intermolecular β-sheets at neutral pH enables siRNA complexation to form nanoparticles which enter cells by endocytosis. Endosome acidification triggers protonation of amino termini and rearrangement to an α-helical conformation forming smaller dendrimer/siRNA nanoparticles, which escape the endosome and release their siRNA cargo in the cytosol. Two particularly efficient d-enantiomeric dendrimers are proposed as new reference reagents for siRNA transfection.

[1]  N. Yagi,et al.  Simplifying the Chemical Structure of Cationic Lipids for siRNA-Lipid Nanoparticles. , 2019, ACS medicinal chemistry letters.

[2]  Beob Soo Kim,et al.  Self-Assembly of siRNA/PEG- b-Catiomer at Integer Molar Ratio into 100 nm-Sized Vesicular Polyion Complexes (siRNAsomes) for RNAi and Codelivery of Cargo Macromolecules. , 2019, Journal of the American Chemical Society.

[3]  D. Pei,et al.  Overcoming Endosomal Entrapment in Drug Delivery. , 2018, Bioconjugate chemistry.

[4]  Dakota J. Brock,et al.  Endosomal Escape and Cytosolic Penetration of Macromolecules Mediated by Synthetic Delivery Agents. , 2018, Bioconjugate chemistry.

[5]  Sabrina Pricl,et al.  A Dual Targeting Dendrimer-Mediated siRNA Delivery System for Effective Gene Silencing in Cancer Therapy. , 2018, Journal of the American Chemical Society.

[6]  Ranjan V. Mannige The BackMAP Python module: how a simpler Ramachandran number can simplify the life of a protein simulator , 2018, PeerJ.

[7]  J. Reymond,et al.  Novel peptide‐dendrimer/lipid/oligonucleotide ternary complexes for efficient cellular uptake and improved splice‐switching activity , 2018, European journal of pharmaceutics and biopharmaceutics : official journal of Arbeitsgemeinschaft fur Pharmazeutische Verfahrenstechnik e.V.

[8]  Mark E. Johnson,et al.  Dendritic peptide bolaamphiphiles for siRNA delivery to primary adipocytes. , 2018, Biomaterials.

[9]  D. Hilvert,et al.  Rational Engineering of a Designed Protein Cage for siRNA Delivery. , 2018, Journal of the American Chemical Society.

[10]  J. Reymond,et al.  Optimizing Antimicrobial Peptide Dendrimers in Chemical Space. , 2018, Angewandte Chemie.

[11]  H. Parekh,et al.  Self-assembling asymmetric peptide-dendrimer micelles – a platform for effective and versatile in vitro nucleic acid delivery , 2018, Scientific Reports.

[12]  Jean-Louis Reymond,et al.  Lipidated Peptide Dendrimers Killing Multidrug-Resistant Bacteria. , 2018, Journal of the American Chemical Society.

[13]  E. Kang,et al.  Polyamidoamine-Decorated Nanodiamonds as a Hybrid Gene Delivery Vector and siRNA Structural Characterization at the Charged Interfaces. , 2017, ACS applied materials & interfaces.

[14]  D. Kohane,et al.  Getting Drugs Across Biological Barriers , 2017, Advanced materials.

[15]  D. Peer,et al.  Next-Generation Lipids in RNA Interference Therapeutics. , 2017, ACS nano.

[16]  J. Reymond,et al.  Peptide Dendrimer-Lipid Conjugates as DNA and siRNA Transfection Reagents: Role of Charge Distribution Across Generations. , 2017, Chimia.

[17]  T. Tenson,et al.  The Formation of Nanoparticles between Small Interfering RNA and Amphipathic Cell-Penetrating Peptides , 2017, Molecular therapy. Nucleic acids.

[18]  Xiaohu Gao,et al.  Functional peptides for siRNA delivery , 2017, Advanced drug delivery reviews.

[19]  K. Kalia,et al.  Surface Engineered Dendrimers in siRNA Delivery and Gene Silencing. , 2017, Current pharmaceutical design.

[20]  J. Reymond,et al.  Efficient Transfection of siRNA by Peptide Dendrimer–Lipid Conjugates , 2016, Chembiochem : a European journal of chemical biology.

[21]  M. Wood,et al.  Peptides for nucleic acid delivery. , 2016, Advanced drug delivery reviews.

[22]  Mark E. Johnson,et al.  Focused Library Approach to Discover Discrete Dipeptide Bolaamphiphiles for siRNA Delivery. , 2016, Biomacromolecules.

[23]  Sourav Bhattacharjee,et al.  DLS and zeta potential - What they are and what they are not? , 2016, Journal of controlled release : official journal of the Controlled Release Society.

[24]  Yang Wang,et al.  Mastering Dendrimer Self-Assembly for Efficient siRNA Delivery: From Conceptual Design to In Vivo Efficient Gene Silencing. , 2016, Small.

[25]  Martin Rother,et al.  Chaperonin–Dendrimer Conjugates for siRNA Delivery , 2016, Advanced science.

[26]  Jingjing Hu,et al.  Tailoring the dendrimer core for efficient gene delivery. , 2016, Acta biomaterialia.

[27]  H. Lusic,et al.  Stimuli responsive charge-switchable lipids: Capture and release of nucleic acids. , 2016, Chemistry and physics of lipids.

[28]  Prarthana V. Rewatkar,et al.  Express in Vitro Plasmid Transfection Achieved with 16+ Asymmetric Peptide Dendrimers. , 2016, ACS biomaterials science & engineering.

[29]  Ranjan V. Mannige,et al.  The Ramachandran Number: An Order Parameter for Protein Geometry , 2015, PloS one.

[30]  Berk Hess,et al.  GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers , 2015 .

[31]  Mark E. Johnson,et al.  Structure-Based Design of Dendritic Peptide Bolaamphiphiles for siRNA Delivery , 2015, ACS central science.

[32]  David K. Smith,et al.  Heparin versus DNA: Chiral Preferences in Polyanion Binding to Self-Assembled Multivalent (SAMul) Nanostructures. , 2015, Journal of the American Chemical Society.

[33]  Judy Lieberman,et al.  Visualizing lipid-formulated siRNA release from endosomes and target gene knockdown , 2015, Nature Biotechnology.

[34]  Mark E. Johnson,et al.  Multivalent dendritic polyglycerolamine with arginine and histidine end groups for efficient siRNA transfection , 2015, Beilstein journal of organic chemistry.

[35]  Qiang Zhang,et al.  Surface-engineered dendrimers in gene delivery. , 2015, Chemical reviews.

[36]  E. Wagner,et al.  Nucleic Acid Therapeutics Using Polyplexes: A Journey of 50 Years (and Beyond). , 2015, Chemical reviews.

[37]  J. Reymond,et al.  Combining topology and sequence design for the discovery of potent antimicrobial peptide dendrimers against multidrug-resistant Pseudomonas aeruginosa. , 2014, Angewandte Chemie.

[38]  Yang Wang,et al.  Adaptive amphiphilic dendrimer-based nanoassemblies as robust and versatile siRNA delivery systems. , 2014, Angewandte Chemie.

[39]  Daniel G. Anderson,et al.  Non-viral vectors for gene-based therapy , 2014, Nature Reviews Genetics.

[40]  Daniel Anderson,et al.  Delivery materials for siRNA therapeutics. , 2013, Nature materials.

[41]  Sarah Seifert,et al.  Image-based analysis of lipid nanoparticle–mediated siRNA delivery, intracellular trafficking and endosomal escape , 2013, Nature Biotechnology.

[42]  J. Reymond,et al.  Peptide Dendrimer/Lipid Hybrid Systems Are Efficient DNA Transfection Reagents: Structure–Activity Relationships Highlight the Role of Charge Distribution Across Dendrimer Generations , 2013, ACS nano.

[43]  Tian Xia,et al.  Physicochemical properties determine nanomaterial cellular uptake, transport, and fate. , 2013, Accounts of chemical research.

[44]  M. Bunček,et al.  In vitro transfection mediated by dendrigraft poly(L-lysines): the effect of structure and molecule size. , 2013, Macromolecular bioscience.

[45]  V. Puntes,et al.  Engineered nonviral nanocarriers for intracellular gene delivery applications , 2012, Biomedical materials.

[46]  T. Hianik,et al.  siRNA carriers based on carbosilane dendrimers affect zeta potential and size of phospholipid vesicles. , 2012, Biochimica et biophysica acta.

[47]  C. Liu,et al.  An amphiphilic dendrimer for effective delivery of small interfering RNA and gene silencing in vitro and in vivo. , 2012, Angewandte Chemie.

[48]  C. Mirkin,et al.  Topical delivery of siRNA-based spherical nucleic acid nanoparticle conjugates for gene regulation , 2012, Proceedings of the National Academy of Sciences.

[49]  J. Reymond,et al.  Peptide and glycopeptide dendrimer apple trees as enzyme models and for biomedical applications. , 2012, Organic & biomolecular chemistry.

[50]  Jinming Gao,et al.  Overcoming endosomal barrier by amphotericin B-loaded dual pH-responsive PDMA-b-PDPA micelleplexes for siRNA delivery. , 2011, ACS nano.

[51]  G. Wang,et al.  Peptide dendrimers as efficient and biocompatible gene delivery vectors: Synthesis and in vitro characterization. , 2011, Journal of controlled release : official journal of the Controlled Release Society.

[52]  A. Metspalu,et al.  Design of a peptide-based vector, PepFect6, for efficient delivery of siRNA in cell culture and systemically in vivo , 2011, Nucleic acids research.

[53]  Z. Khan,et al.  Efficiency of gene transfection reagents in NG108-15, SH-SY5Y and CHO-K1 cell lines. , 2010, Methods and findings in experimental and clinical pharmacology.

[54]  K. G. Rajeev,et al.  Rational design of cationic lipids for siRNA delivery , 2010, Nature Biotechnology.

[55]  T. Niidome,et al.  In vivo siRNA delivery with dendritic poly(L-lysine) for the treatment of hypercholesterolemia. , 2009, Molecular bioSystems.

[56]  Mark E. Davis The first targeted delivery of siRNA in humans via a self-assembling, cyclodextrin polymer-based nanoparticle: from concept to clinic. , 2009, Molecular pharmaceutics.

[57]  Jayanth Panyam,et al.  Polymeric nanoparticles for siRNA delivery and gene silencing. , 2009, International journal of pharmaceutics.

[58]  J. Reymond,et al.  Combinatorial libraries of peptide dendrimers: design, synthesis, on-bead high-throughput screening, bead decoding and characterization , 2009, Nature Protocols.

[59]  S. Haney,et al.  Quantitative optimization of reverse transfection conditions for 384-well siRNA library screening. , 2008, Assay and drug development technologies.

[60]  Stephanie E. A. Gratton,et al.  The effect of particle design on cellular internalization pathways , 2008, Proceedings of the National Academy of Sciences.

[61]  G. J. Gabriel,et al.  Stimuli-Responsive Polyguanidino-Oxanorbornene Membrane Transporters as Multicomponent Sensors in Complex Matrices , 2008, Journal of the American Chemical Society.

[62]  Robert Langer,et al.  A combinatorial library of lipid-like materials for delivery of RNAi therapeutics , 2008, Nature Biotechnology.

[63]  O. Danos,et al.  Optimising histidine rich peptides for efficient DNA delivery in the presence of serum. , 2007, Journal of controlled release : official journal of the Controlled Release Society.

[64]  Ling Peng,et al.  PAMAM dendrimers for efficient siRNA delivery and potent gene silencing. , 2006, Chemical communications.

[65]  J. Engberts,et al.  The use of Nile Red to monitor the aggregation behavior in ternary surfactant–water–organic solvent systems , 2005 .

[66]  Lee Whitmore,et al.  DICHROWEB, an online server for protein secondary structure analyses from circular dichroism spectroscopic data , 2004, Nucleic Acids Res..

[67]  B. Dalby,et al.  Advanced transfection with Lipofectamine 2000 reagent: primary neurons, siRNA, and high-throughput applications. , 2004, Methods.

[68]  J. Reymond,et al.  Catalytic peptide dendrimers. , 2003, Angewandte Chemie.

[69]  Michael T. McManus,et al.  Gene silencing in mammals by small interfering RNAs , 2002, Nature Reviews Genetics.

[70]  Takuro Niidome,et al.  In vitro gene transfection using dendritic poly(L-lysine). , 2002, Bioconjugate chemistry.

[71]  N. Sreerama,et al.  Estimation of protein secondary structure from circular dichroism spectra: comparison of CONTIN, SELCON, and CDSSTR methods with an expanded reference set. , 2000, Analytical biochemistry.

[72]  T. Senden,et al.  Supramolecular structure and nuclear targeting efficiency determine the enhancement of transfection by modified polylysines , 2000, Gene Therapy.

[73]  J. Baker,et al.  Efficient transfer of genetic material into mammalian cells using Starburst polyamidoamine dendrimers. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[74]  D. Scherman,et al.  A versatile vector for gene and oligonucleotide transfer into cells in culture and in vivo: polyethylenimine. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[75]  K. Altendorf,et al.  Bafilomycins: a class of inhibitors of membrane ATPases from microorganisms, animal cells, and plant cells. , 1988, Proceedings of the National Academy of Sciences of the United States of America.

[76]  S. Provencher,et al.  Estimation of globular protein secondary structure from circular dichroism. , 1981, Biochemistry.