Efficient softest mode finding in transition states calculations.
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Zhi-Pan Liu | Weiguo Gao | Cheng Shang | C. Shang | Zhipan Liu | Jing Leng | Jing Leng | Weiguo Gao
[1] Jon Baker,et al. The location of transition states: A comparison of Cartesian, Z‐matrix, and natural internal coordinates , 1996 .
[2] Walter Thiel,et al. DL-FIND: an open-source geometry optimizer for atomistic simulations. , 2009, The journal of physical chemistry. A.
[3] G. Henkelman,et al. Comparison of methods for finding saddle points without knowledge of the final states. , 2004, The Journal of chemical physics.
[4] G. Kresse,et al. Efficiency of ab-initio total energy calculations for metals and semiconductors using a plane-wave basis set , 1996 .
[5] Barkema,et al. Event-Based Relaxation of Continuous Disordered Systems. , 1996, Physical review letters.
[6] Y. Khait,et al. Search for stationary points on multidimensional surfaces , 1997 .
[7] A. Chakraborty,et al. A growing string method for determining transition states: comparison to the nudged elastic band and string methods. , 2004, The Journal of chemical physics.
[8] G. Henkelman,et al. Improved tangent estimate in the nudged elastic band method for finding minimum energy paths and saddle points , 2000 .
[9] Andrew V. Knyazev,et al. Toward the Optimal Preconditioned Eigensolver: Locally Optimal Block Preconditioned Conjugate Gradient Method , 2001, SIAM J. Sci. Comput..
[10] D. Wales. Structural and topological consequences of anisotropic interactions in clusters , 1990 .
[11] P. Jørgensen,et al. Walking on potential energy surfaces , 1983 .
[12] A. Bell,et al. Efficient methods for finding transition states in chemical reactions: comparison of improved dimer method and partitioned rational function optimization method. , 2005, The Journal of chemical physics.
[13] Zhipan Liu,et al. Comprehensive mechanism and structure-sensitivity of ethanol oxidation on platinum: new transition-state searching method for resolving the complex reaction network. , 2008, Journal of the American Chemical Society.
[14] Weinan E,et al. Atomistic simulations of rare events using gentlest ascent dynamics. , 2011, The Journal of chemical physics.
[15] G. Henkelman,et al. A dimer method for finding saddle points on high dimensional potential surfaces using only first derivatives , 1999 .
[16] Theoretical study of some small van der Waals complexes containing inert gas atoms , 1991 .
[17] Lindsey J. Munro,et al. DEFECT MIGRATION IN CRYSTALLINE SILICON , 1999 .
[18] Ron Elber,et al. A method for determining reaction paths in large molecules: application to myoglobin , 1987 .
[19] Mills,et al. Quantum and thermal effects in H2 dissociative adsorption: Evaluation of free energy barriers in multidimensional quantum systems. , 1994, Physical review letters.
[20] N. Mousseau,et al. Dynamics of lennard-jones clusters: A characterization of the activation-relaxation technique , 2000 .
[21] David J Wales,et al. Comparison of double-ended transition state search methods. , 2007, The Journal of chemical physics.
[22] David J. Wales,et al. Transition states and rearrangement mechanisms from hybrid eigenvector-following and density functional theory. Application to C10H10 and defect migration in crystalline silicon , 2001 .
[23] Evgueni E. Ovtchinnikov,et al. Jacobi Correction Equation, Line Search, and Conjugate Gradients in Hermitian Eigenvalue Computation I: Computing an Extreme Eigenvalue , 2008, SIAM J. Numer. Anal..
[24] G. Henkelman,et al. A climbing image nudged elastic band method for finding saddle points and minimum energy paths , 2000 .
[25] G. Henkelman,et al. Optimization methods for finding minimum energy paths. , 2008, The Journal of chemical physics.
[26] C. Shang,et al. Constrained Broyden Minimization Combined with the Dimer Method for Locating Transition State of Complex Reactions , 2010 .
[27] David J. Wales,et al. Erratum: A doubly nudged elastic band method for finding transition states [J. Chem. Phys. 120, 2082 (2004)] , 2004 .
[28] David J Wales,et al. Finding pathways between distant local minima. , 2005, The Journal of chemical physics.
[29] Qiang Du,et al. Constrained shrinking dimer dynamics for saddle point search with constraints , 2012, J. Comput. Phys..
[30] Paul Sherwood,et al. Superlinearly converging dimer method for transition state search. , 2008, The Journal of chemical physics.
[31] D. Wales,et al. A doubly nudged elastic band method for finding transition states. , 2004, The Journal of chemical physics.
[32] W. Miller,et al. ON FINDING TRANSITION STATES , 1981 .
[33] E. Vanden-Eijnden,et al. String method for the study of rare events , 2002, cond-mat/0205527.
[34] J. Baker. An algorithm for the location of transition states , 1986 .
[35] David J Wales,et al. Protonated water clusters described by an empirical valence bond potential. , 2005, The Journal of chemical physics.
[36] David J. Wales,et al. Global optimization and folding pathways of selected α-helical proteins , 2005 .
[37] E Weinan,et al. The gentlest ascent dynamics , 2010, 1011.0042.