Bioenergetic constraints on the evolution of complex life.
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[1] T. Cavalier-smith,et al. Eukaryotes with no mitochondria , 1987, Nature.
[2] T. Lenton,et al. The Rise of Oxygen and Complex Life , 2012, The Journal of eukaryotic microbiology.
[3] C. V. Dohlen,et al. Mealybug β-proteobacterial endosymbionts contain γ-proteobacterial symbionts , 2001, Nature.
[4] J. M. Smith,et al. How clonal are bacteria? , 1993, Proceedings of the National Academy of Sciences of the United States of America.
[5] J. Allen,et al. Control of gene expression by redox potential and the requirement for chloroplast and mitochondrial genomes. , 1993, Journal of theoretical biology.
[6] B. Schoepp‐Cothenet,et al. The redox protein construction kit: pre-last universal common ancestor evolution of energy-conserving enzymes. , 2003, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.
[7] Daniel J. G. Lahr,et al. Estimating the timing of early eukaryotic diversification with multigene molecular clocks , 2011, Proceedings of the National Academy of Sciences.
[8] J. Amend,et al. The energetics of organic synthesis inside and outside the cell , 2013, Philosophical Transactions of the Royal Society B: Biological Sciences.
[9] N. Lane. Energetics and genetics across the prokaryote-eukaryote divide , 2011, Biology Direct.
[10] Tomasello,et al. A congruent phylogenomic signal places eukaryotes within the Archaea , 2012, Proceedings of the Royal Society B: Biological Sciences.
[11] C. Duve. The origin of eukaryotes: a reappraisal , 2007, Nature Reviews Genetics.
[12] Josef D. Franke,et al. Endocytosis-like protein uptake in the bacterium Gemmata obscuriglobus , 2010, Proceedings of the National Academy of Sciences.
[13] R. Seymour,et al. Selection for mitonuclear co-adaptation could favour the evolution of two sexes , 2012, Proceedings of the Royal Society B: Biological Sciences.
[14] P. Keightley,et al. Interference among deleterious mutations favours sex and recombination in finite populations , 2006, Nature.
[15] Fuli Li,et al. Coupled Ferredoxin and Crotonyl Coenzyme A (CoA) Reduction with NADH Catalyzed by the Butyryl-CoA Dehydrogenase/Etf Complex from Clostridium kluyveri , 2007, Journal of bacteriology.
[16] R. Burton,et al. Natural selection and the evolution of mtDNA-encoded peptides: evidence for intergenomic co-adaptation. , 2001, Trends in genetics : TIG.
[17] J. Leu,et al. Speciation through cytonuclear incompatibility: Insights from yeast and implications for higher eukaryotes , 2010, BioEssays : news and reviews in molecular, cellular and developmental biology.
[18] A. Lambowitz,et al. Mobile group II introns. , 2004, Annual review of genetics.
[19] A. Templeton,et al. Mitochondrial bioenergetics as a major motive force of speciation , 2009, BioEssays : news and reviews in molecular, cellular and developmental biology.
[20] Dieter Braun,et al. Extreme accumulation of nucleotides in simulated hydrothermal pore systems , 2007, Proceedings of the National Academy of Sciences.
[21] Laurence D. Hurst,et al. Cytoplasmic fusion and the nature of sexes , 1992, Proceedings of the Royal Society of London. Series B: Biological Sciences.
[22] Nick Lane,et al. The Costs of Breathing , 2011, Science.
[23] D. Wujek. Intracellular Bacteria in the Blue-Green Alga Pleurocapsa minor , 1979 .
[24] P. Mitchell. Coupling of Phosphorylation to Electron and Hydrogen Transfer by a Chemi-Osmotic type of Mechanism , 1961, Nature.
[25] John M. Berrisford,et al. Crystal structure of the entire respiratory complex I , 2013, Nature.
[26] B Franz Lang,et al. Mitochondria of protists. , 2004, Annual review of genetics.
[27] C. Moraes,et al. Functional Constraints of Nuclear-Mitochondrial DNA Interactions in Xenomitochondrial Rodent Cell Lines* 210 , 2000, The Journal of Biological Chemistry.
[28] Nicolas Galtier,et al. The erratic mitochondrial clock: variations of mutation rate, not population size, affect mtDNA diversity across birds and mammals , 2009, BMC Evolutionary Biology.
[29] S. Bell,et al. Extrachromosomal element capture and the evolution of multiple replication origins in archaeal chromosomes , 2007, Proceedings of the National Academy of Sciences.
[30] W. Martin,et al. Biochemistry and Evolution of Anaerobic Energy Metabolism in Eukaryotes , 2012, Microbiology and Molecular Reviews.
[31] E. Koonin,et al. The origins of phagocytosis and eukaryogenesis , 2009, Biology Direct.
[32] F. Harold. The Vital Force: A Study of Bioenergetics , 1986 .
[33] B. Bassler,et al. Quorum sensing: cell-to-cell communication in bacteria. , 2005, Annual review of cell and developmental biology.
[34] John F. Allen,et al. The function of genomes in bioenergetic organelles. , 2003, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.
[35] N. Blackstone. Why did eukaryotes evolve only once? Genetic and energetic aspects of conflict and conflict mediation , 2013, Philosophical Transactions of the Royal Society B: Biological Sciences.
[36] M. Russell,et al. The emergence of life from iron monosulphide bubbles at a submarine hydrothermal redox and pH front , 1997, Journal of the Geological Society.
[37] D. Bhattacharya,et al. Uniting sex and eukaryote origins in an emerging oxygenic world , 2010, Biology Direct.
[38] R. Burton,et al. The Sorry State of F2 Hybrids: Consequences of Rapid Mitochondrial DNA Evolution in Allopatric Populations , 2006, The American Naturalist.
[39] J. Archibald,et al. Origin of eukaryotic cells: 40 years on , 2011, Symbiosis.
[40] R. Burton,et al. A disproportionate role for mtDNA in Dobzhansky–Muller incompatibilities? , 2012, Molecular ecology.
[41] P. Keightley,et al. Selective interference among deleterious mutations favours sex and recombination in finite populations regardless of the nature of epistasis , 2006 .
[42] N. Moran,et al. Colloquium Papers: Symbiosis as an adaptive process and source of phenotypic complexity , 2007 .
[43] L. Sagan. On the origin of mitosing cells , 1967, Journal of theoretical biology.
[44] H. Yonekawa,et al. Complete repopulation of mouse mitochondrial DNA-less cells with rat mitochondrial DNA restores mitochondrial translation but not mitochondrial respiratory function. , 2000, Genetics.
[45] K. Clements,et al. Extreme polyploidy in a large bacterium , 2008, Proceedings of the National Academy of Sciences.
[46] Hank Tu,et al. The Genome of Naegleria gruberi Illuminates Early Eukaryotic Versatility , 2010, Cell.
[47] A. Knoll,et al. Eukaryotic organisms in Proterozoic oceans , 2006, Philosophical Transactions of the Royal Society B: Biological Sciences.
[48] C. Gissi,et al. Nucleotide Substitution Rate of Mammalian Mitochondrial Genomes , 1999, Journal of Molecular Evolution.
[49] Davide Pisani,et al. Supertrees disentangle the chimerical origin of eukaryotic genomes. , 2007, Molecular biology and evolution.
[50] Marc Strous,et al. Cell compartmentalisation in planctomycetes: novel types of structural organisation for the bacterial cell , 2001, Archives of Microbiology.
[51] Andrew Pohorille,et al. Self-assembly and function of primitive cell membranes. , 2009, Research in microbiology.
[52] Jodie J. Yin,et al. A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes , 2004, Genome Biology.
[53] The archaebacterial origin of eukaryotes , 2009 .
[54] Patrick J. Keeling,et al. A kingdom's progress: Archezoa and the origin of eukaryotes , 1998 .
[55] Eugene V. Koonin,et al. Introns and the origin of nucleus–cytosol compartmentalization , 2006, Nature.
[56] J. Amend,et al. Energetics of Biomolecule Synthesis on Early Earth , 2009 .
[57] P. Mitchell. The Origin of Life and the Formation and Organizing Functions of Natural Membranes , 1959 .
[58] R. Burton,et al. INTERPOPULATION HYBRID BREAKDOWN MAPS TO THE MITOCHONDRIAL GENOME , 2008, Evolution; international journal of organic evolution.
[59] E. Angert,et al. DNA replication and genomic architecture of very large bacteria. , 2012, Annual review of microbiology.
[60] R. Daniel,et al. On the emergence of life via catalytic iron‐sulphide membranes , 1993 .
[61] W. Martin,et al. The Origin of Membrane Bioenergetics , 2012, Cell.
[62] W. Martin,et al. The energetics of genome complexity , 2010, Nature.
[63] E. Koonin. Intron-dominated genomes of early ancestors of eukaryotes. , 2009, The Journal of heredity.
[64] C. Lange,et al. Ploidy in cyanobacteria. , 2011, FEMS microbiology letters.
[65] M. Hengartner. Apoptosis: Death cycle and Swiss army knives , 1998, Nature.
[66] Anne-Kristin Kaster,et al. Coupling of ferredoxin and heterodisulfide reduction via electron bifurcation in hydrogenotrophic methanogenic archaea , 2011, Proceedings of the National Academy of Sciences.
[67] D. Wallace. Bioenergetics in human evolution and disease: implications for the origins of biological complexity and the missing genetic variation of common diseases , 2013, Philosophical Transactions of the Royal Society B: Biological Sciences.
[68] T. Gregory. Synergy between sequence and size in Large-scale genomics , 2005, Nature Reviews Genetics.
[69] D. Braun,et al. Escalation of polymerization in a thermal gradient , 2013, Proceedings of the National Academy of Sciences.
[70] Ji Yu,et al. The dynamic nature of the bacterial cytoskeleton , 2009, Cellular and Molecular Life Sciences.
[71] A. Pinevich. INTRACYTOPLASMIC MEMBRANE STRUCTURES IN BACTERIA , 1997 .
[72] A. Ducluzeau,et al. On the universal core of bioenergetics. , 2013, Biochimica et biophysica acta.
[73] Michael Y. Galperin,et al. Origin of first cells at terrestrial, anoxic geothermal fields , 2012, Proceedings of the National Academy of Sciences.
[74] W. Martin,et al. Eukaryotic evolution, changes and challenges , 2006, Nature.
[75] E. Koonin. The origin and early evolution of eukaryotes in the light of phylogenomics , 2010, Genome Biology.
[76] E. Jurkevitch,et al. Predation between prokaryotes and the origin of eukaryotes , 2009, BioEssays : news and reviews in molecular, cellular and developmental biology.
[77] N Lane,et al. Why are cells powered by proton gradients , 2010 .
[78] J. Sutherland,et al. Synthesis of activated pyrimidine ribonucleotides in prebiotically plausible conditions , 2009, Nature.
[79] B. Barrell,et al. Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2) , 2002, Nature.
[80] Z. Kozmík,et al. Eye evolution: common use and independent recruitment of genetic components , 2009, Philosophical Transactions of the Royal Society B: Biological Sciences.
[81] N. Lane. Mitonuclear match: Optimizing fitness and fertility over generations drives ageing within generations , 2011, BioEssays : news and reviews in molecular, cellular and developmental biology.
[82] S. Zimmerly,et al. A diversity of uncharacterized reverse transcriptases in bacteria , 2008, Nucleic acids research.
[83] W. Martin,et al. On the origins of cells: a hypothesis for the evolutionary transitions from abiotic geochemistry to chemoautotrophic prokaryotes, and from prokaryotes to nucleated cells. , 2003, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.
[84] C. Kurland,et al. Origins of mitochondria and hydrogenosomes. , 1999, Current opinion in microbiology.
[85] V. Bianciotto,et al. Endosymbiotic bacteria in mycorrhizal fungi: from their morphology to genomic sequences , 2002, Plant and Soil.
[86] W. Martin,et al. Hydrothermal vents and the origin of life , 2008, Nature Reviews Microbiology.
[87] C. V. Dohlen,et al. Mealybug b-proteobacterial endosymbionts contain g-proteobacterial symbionts , 2022 .
[88] C. Moraes,et al. Human Xenomitochondrial Cybrids , 1998, The Journal of Biological Chemistry.
[89] N. Galtier. The intriguing evolutionary dynamics of plant mitochondrial DNA , 2011, BMC Biology.
[90] Walter Gilbert,et al. The evolution of spliceosomal introns: patterns, puzzles and progress , 2006, Nature Reviews Genetics.
[91] J. Archibald,et al. The eukaryotic tree of life: endosymbiosis takes its TOL. , 2008, Trends in ecology & evolution.
[92] N. Arndt,et al. Processes on the Young Earth and the Habitats of Early Life , 2012 .
[93] M. Schulte,et al. The Emergence of Metabolism from Within Hydrothermal Systems , 1998 .
[94] J. Lake,et al. The ring of life provides evidence for a genome fusion origin of eukaryotes , 2004, Nature.
[95] R. Thauer,et al. Energy conservation via electron bifurcating ferredoxin reduction and proton/Na(+) translocating ferredoxin oxidation. , 2013, Biochimica et biophysica acta.
[96] T. Cavalier-smith. Archaebacteria and Archezoa , 1989, Nature.
[97] Anne-Kristin Kaster,et al. Methanogenic archaea: ecologically relevant differences in energy conservation , 2008, Nature Reviews Microbiology.
[98] M. Russell,et al. The inevitable journey to being , 2013, Philosophical Transactions of the Royal Society B: Biological Sciences.
[99] W. Martin,et al. How did LUCA make a living? Chemiosmosis in the origin of life. , 2010, BioEssays : news and reviews in molecular, cellular and developmental biology.
[100] M. Giezen. Hydrogenosomes and Mitosomes: Conservation and Evolution of Functions , 2009 .
[101] W. Martin,et al. The hydrogen hypothesis for the first eukaryote , 1998, Nature.
[102] Jack W. Szostak,et al. Formation of Protocell-like Vesicles in a Thermal Diffusion Column , 2009, Journal of the American Chemical Society.
[103] D. Frishman,et al. Coevolution predicts direct interactions between mtDNA-encoded and nDNA-encoded subunits of oxidative phosphorylation complex i. , 2010, Journal of molecular biology.
[104] B. Maden. Tetrahydrofolate and tetrahydromethanopterin compared: functionally distinct carriers in C1 metabolism. , 2000, The Biochemical journal.
[105] D. Wallace,et al. Adaptive selection of mitochondrial complex I subunits during primate radiation. , 2006, Gene.
[106] N. Sleep,et al. Serpentinite and the dawn of life , 2011, Philosophical Transactions of the Royal Society B: Biological Sciences.
[107] R. Seymour,et al. Dynamics of mitochondrial inheritance in the evolution of binary mating types and two sexes , 2013, Proceedings of the Royal Society B: Biological Sciences.
[108] G. Wächtershäuser,et al. Pyrite Formation, the First Energy Source for Life: a Hypothesis , 1988 .
[109] H. N. Schulz,et al. Big bacteria. , 2001, Annual review of microbiology.
[110] W. Martin,et al. The rocky roots of the acetyl-CoA pathway. , 2004, Trends in biochemical sciences.
[111] W. Martin,et al. On the origin of biochemistry at an alkaline hydrothermal vent , 2007, Philosophical Transactions of the Royal Society B: Biological Sciences.