A Compressed Sensing Framework for Magnetic Resonance Fingerprinting

Inspired by the recently proposed magnetic resonance fingerprinting (MRF) technique, we develop a principled compressed sensing framework for quantitative MRI. The three key components are a random pulse excitation sequence following the MRF technique, a random EPI subsampling strategy, and an iterative projection algorithm that imposes consistency with the Bloch equations. We show that, theoretically, as long as the excitation sequence possesses an appropriate form of persistent excitation, we are able to accurately recover the proton density, T1, T2, and off-resonance maps simultaneously from a limited number of samples. These results are further supported through extensive simulations using a brain phantom.

[1]  Massimo Fornasier,et al.  Compressive Sensing and Structured Random Matrices , 2010 .

[2]  Mauro Maggioni,et al.  Approximation of Points on Low-Dimensional Manifolds Via Random Linear Projections , 2012, ArXiv.

[3]  H. Rauhut Compressive Sensing and Structured Random Matrices , 2009 .

[4]  E. T. Jaynes,et al.  MATRIX TREATMENT OF NUCLEAR INDUCTION , 1955 .

[5]  Pierre Vandergheynst,et al.  Compressive Source Separation: Theory and Methods for Hyperspectral Imaging , 2012, IEEE Transactions on Image Processing.

[6]  M. Lustig,et al.  Compressed Sensing MRI , 2008, IEEE Signal Processing Magazine.

[7]  Kenneth L. Clarkson,et al.  Tighter bounds for random projections of manifolds , 2008, SCG '08.

[8]  John Langford,et al.  Cover trees for nearest neighbor , 2006, ICML.

[9]  J. Duerk,et al.  Magnetic Resonance Fingerprinting , 2013, Nature.

[10]  Mike E. Davies,et al.  Normalized Iterative Hard Thresholding: Guaranteed Stability and Performance , 2010, IEEE Journal of Selected Topics in Signal Processing.

[11]  AdcockBen,et al.  Generalized Sampling and Infinite-Dimensional Compressed Sensing , 2016 .

[12]  Richard G. Baraniuk,et al.  Random Projections of Smooth Manifolds , 2009, Found. Comput. Math..

[13]  Zhi-Pei Liang,et al.  Model-based MR parameter mapping with sparsity constraint , 2013, ISBI.

[14]  Mike E. Davies,et al.  Iterative Hard Thresholding for Compressed Sensing , 2008, ArXiv.

[15]  Jeffrey A. Fessler,et al.  Model-Based Image Reconstruction for MRI , 2010, IEEE Signal Processing Magazine.

[16]  Jeffrey A. Fessler,et al.  Nonuniform fast Fourier transforms using min-max interpolation , 2003, IEEE Trans. Signal Process..

[17]  Thomas Blumensath,et al.  Sampling and Reconstructing Signals From a Union of Linear Subspaces , 2009, IEEE Transactions on Information Theory.

[18]  Mariya Doneva,et al.  Compressed sensing reconstruction for magnetic resonance parameter mapping , 2010, Magnetic resonance in medicine.

[19]  Mike E. Davies,et al.  Sampling Theorems for Signals From the Union of Finite-Dimensional Linear Subspaces , 2009, IEEE Transactions on Information Theory.

[20]  D. Louis Collins,et al.  Design and construction of a realistic digital brain phantom , 1998, IEEE Transactions on Medical Imaging.

[21]  Pierre Vandergheynst,et al.  Universal and efficient compressed sensing by spread spectrum and application to realistic Fourier imaging techniques , 2011, EURASIP J. Adv. Signal Process..

[22]  Holger Rauhut,et al.  Compressive Sensing with structured random matrices , 2012 .

[23]  Stephen Smale,et al.  Finding the Homology of Submanifolds with High Confidence from Random Samples , 2008, Discret. Comput. Geom..

[24]  Ben Adcock,et al.  Generalized Sampling and Infinite-Dimensional Compressed Sensing , 2016, Found. Comput. Math..

[25]  C. Ganter Off‐resonance effects in the transient response of SSFP sequences , 2004, Magnetic resonance in medicine.

[26]  J. Pauly,et al.  Characterization and reduction of the transient response in steady‐state MR imaging , 2001, Magnetic resonance in medicine.

[27]  P. Boesiger,et al.  SENSE: Sensitivity encoding for fast MRI , 1999, Magnetic resonance in medicine.

[28]  B. Rutt,et al.  Rapid combined T1 and T2 mapping using gradient recalled acquisition in the steady state , 2003, Magnetic resonance in medicine.

[29]  Mark Bydder,et al.  Evaluation of optimal density weighting for regridding. , 2007, Magnetic resonance imaging.

[30]  Jens Frahm,et al.  Model-Based Iterative Reconstruction for Radial Fast Spin-Echo MRI , 2009, IEEE Transactions on Medical Imaging.

[31]  J. Hogg Magnetic resonance imaging. , 1994, Journal of the Royal Naval Medical Service.

[32]  D. Hahn,et al.  Model‐based Acceleration of Parameter mapping (MAP) for saturation prepared radially acquired data , 2013, Magnetic resonance in medicine.

[33]  K. Scheffler,et al.  Principles and applications of balanced SSFP techniques , 2003, European Radiology.

[34]  R. DeVore,et al.  A Simple Proof of the Restricted Isometry Property for Random Matrices , 2008 .

[35]  Ali Bilgin,et al.  T2 relaxometry with indirect echo compensation from highly undersampled data , 2013, Magnetic resonance in medicine.

[36]  G. Mckinnon Ultrafast interleaved gradient‐echo‐planar imaging on a standard scanner , 1993, Magnetic resonance in medicine.

[37]  Pierre Vandergheynst,et al.  On Variable Density Compressive Sampling , 2011, IEEE Signal Processing Letters.

[38]  Bernard Chazelle,et al.  The Fast Johnson--Lindenstrauss Transform and Approximate Nearest Neighbors , 2009, SIAM J. Comput..

[39]  Alessandro Panconesi,et al.  Concentration of Measure for the Analysis of Randomized Algorithms , 2009 .