1H NMR Investigation of the Solution Structure of Substrate-free Human Heme Oxygenase

1H NMR was used to investigate the molecular structure, and dynamic properties of soluble, recombinant, substrate-free human heme oxygenase (apohHO) on a comparative basis with similar studies on the substrate complex. Limited but crucial sequence-specific assignments identify five conserved secondary structural elements, and the detection of highly characteristic dipolar or H-bond interactions among these elements together with insignificant chemical shift differences confirm a strongly conserved folding topology of helices C–H relative to that of substrate complexes in either solution or the crystal. The correction of the chemical shifts for paramagnetic and porphyrin ring current influences in the paramagnetic substrate complex reveals that the strength of all but one of the numerous relatively robust H-bonds are conserved in apohHO, and similar ordered water molecules are located near these H-bond donors as observed in the substrate complexes. The unique and significant weakening of the Tyr58 OH hydrogen bond to the catalytically critical Asp140 carboxylate in apohHO is suggested to arise from the removal of the axial H-bond acceptor ligand rather than the loss of substrate. The interhelical positions of the conserved strong H-bonds argue for a structural role in maintaining a conserved structure for helices C–H upon loss of substrate. While the structure and H-bond network are largely conserved upon loss of substrate, the variably increased rate of NH lability dictates a significant loss of dynamic stability in the conserved structure, particularly near the distal helix F.

[1]  Sam-Yong Park,et al.  The Crystal Structures of the Ferric and Ferrous Forms of the Heme Complex of HmuO, a Heme Oxygenase of Corynebacterium diphtheriae* , 2004, Journal of Biological Chemistry.

[2]  P. Ortiz de Montellano,et al.  Solution 1H, 15N NMR spectroscopic characterization of substrate-bound, cyanide-inhibited human heme oxygenase: water occupation of the distal cavity. , 2003, Journal of the American Chemical Society.

[3]  D. J. Schuller,et al.  Comparison of the Heme-free and -bound Crystal Structures of Human Heme Oxygenase-1* , 2003, The Journal of Biological Chemistry.

[4]  M. Ikeda-Saito,et al.  Solution 1H NMR Investigation of the Active Site Molecular and Electronic Structures of Substrate-bound, Cyanide-inhibited HmuO, a Bacterial Heme Oxygenase fromCorynebacterium diphtheriae * 210 , 2003, The Journal of Biological Chemistry.

[5]  H. Sakamoto,et al.  Crystal Structure of Rat Heme Oxygenase-1 in Complex with Heme Bound to Azide , 2002, The Journal of Biological Chemistry.

[6]  M. A. Eastman,et al.  Oxidation of heme to β- and δ-biliverdin by Pseudomonas aeruginosa heme oxygenase as a consequence of an unusual seating of the heme , 2002 .

[7]  P. Ortiz de Montellano,et al.  1H NMR detection of immobilized water molecules within a strong distal hydrogen-bonding network of substrate-bound human heme oxygenase-1. , 2002, Journal of the American Chemical Society.

[8]  P. Ortiz de Montellano,et al.  Solution NMR Characterization of an Unusual Distal H-bond Network in the Active Site of the Cyanide-inhibited, Human Heme Oxygenase Complex of the Symmetric Substrate, 2,4-Dimethyldeuterohemin* 210 , 2002, The Journal of Biological Chemistry.

[9]  H. Sakamoto,et al.  Crystal structure of rat apo-heme oxygenase-1 (HO-1): Mechanism of heme binding in HO-1 inferred from structural comparison of the apo and heme complex forms , 2002 .

[10]  M. Ikeda-Saito,et al.  Catalytic mechanism of heme oxygenase through EPR and ENDOR of cryoreduced oxy-heme oxygenase and its Asp 140 mutants. , 2002, Journal of the American Chemical Society.

[11]  T. Poulos,et al.  Crystal structure of heme oxygenase from the gram-negative pathogen Neisseria meningitidis and a comparison with mammalian heme oxygenase-1. , 2001, Biochemistry.

[12]  P. Ortiz de Montellano,et al.  Solution 1H NMR of the Active Site of Substrate-bound, Cyanide-inhibited Human Heme Oxygenase , 2001, The Journal of Biological Chemistry.

[13]  P. Ortiz de Montellano,et al.  Solution 1H NMR of the molecular and electronic structure of the heme cavity and substrate binding pocket of high-spin ferric horseradish peroxidase: effect of His42Ala mutation. , 2001, Journal of the American Chemical Society.

[14]  A. Wilks,et al.  Degradation of Heme in Gram-Negative Bacteria: the Product of the hemO Gene of Neisseriae Is a Heme Oxygenase , 2000, Journal of bacteriology.

[15]  C. T. Migita,et al.  Mechanism of heme degradation by heme oxygenase. , 2000, Journal of inorganic biochemistry.

[16]  H. Sakamoto,et al.  Crystal structure of rat heme oxygenase‐1 in complex with heme , 2000, FEBS letters.

[17]  P. R. Montellano The mechanism of heme oxygenase. , 2000, Current opinion in chemical biology.

[18]  D. J. Schuller,et al.  Crystal structure of human heme oxygenase-1 , 1999, Nature Structural Biology.

[19]  T. Harris,et al.  High‐Precision Measurement of Hydrogen Bond Lengths in Proteins by Nuclear Magnetic Resonance Methods , 1999, Proteins.

[20]  A. Wilks,et al.  Solution 1H NMR Investigation of the Molecular and Electronic Structure of the Active Site of Substrate-Bound Human Heme Oxygenase: the Nature of the Distal Hydrogen Bond Donor to Bound Ligands , 1998 .

[21]  G. A. Jeffrey,et al.  An Introduction to Hydrogen Bonding , 1997 .

[22]  M. Schmitt Utilization of host iron sources by Corynebacterium diphtheriae: identification of a gene whose product is homologous to eukaryotic heme oxygenases and is required for acquisition of iron from heme and hemoglobin , 1997, Journal of bacteriology.

[23]  D. Rousseau,et al.  Oxygen-Bound Heme-Heme Oxygenase Complex: Evidence for a Highly Bent Structure of the Coordinated Oxygen , 1995 .

[24]  P. Ortiz de Montellano,et al.  Expression and characterization of truncated human heme oxygenase (hHO-1) and a fusion protein of hHO-1 with human cytochrome P450 reductase. , 1995, Biochemistry.

[25]  R. Paolesse,et al.  Proton NMR investigation of substrate-bound heme oxygenase: evidence for electronic and steric contributions to stereoselective heme cleavage. , 1994, Biochemistry.

[26]  S. Takahashi,et al.  Heme-heme oxygenase complex: structure and properties of the catalytic site from resonance Raman scattering. , 1994, Biochemistry.

[27]  S. Takahashi,et al.  Heme-heme oxygenase complex. Structure of the catalytic site and its implication for oxygen activation. , 1994, The Journal of biological chemistry.

[28]  J. Sun,et al.  Resonance Raman and EPR spectroscopic studies on heme-heme oxygenase complexes. , 1993, Biochemistry.

[29]  V. Saudek,et al.  Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions , 1992, Journal of biomolecular NMR.

[30]  R. Hodges,et al.  Relationship between amide proton chemical shifts and hydrogen bonding in amphipathic .alpha.-helical peptides , 1992 .

[31]  F. Richards,et al.  Relationship between nuclear magnetic resonance chemical shift and protein secondary structure. , 1991, Journal of molecular biology.

[32]  I. Kuntz,et al.  Amide chemical shifts in many helices in peptides and proteins are periodic , 1991 .

[33]  Christian Griesinger,et al.  Clean TOCSY for proton spin system identification in macromolecules , 1988 .

[34]  K. Wüthrich NMR of proteins and nucleic acids , 1988 .

[35]  S. Shibahara,et al.  Human heme oxygenase cDNA and induction of its mRNA by hemin. , 1988, European journal of biochemistry.

[36]  S. Shibahara,et al.  Nucleotide sequence and organization of the rat heme oxygenase gene. , 1987, The Journal of biological chemistry.

[37]  Ad Bax,et al.  MLEV-17-based two-dimensional homonuclear magnetization transfer spectroscopy , 1985 .

[38]  P. Wright,et al.  CALIBRATION OF RING-CURRENT MODELS FOR THE HEME RING , 1985 .

[39]  K. Wüthrich,et al.  Protein conformation and proton nuclear-magnetic-resonance chemical shifts. , 1983, European journal of biochemistry.

[40]  N. Kallenbach,et al.  Hydrogen exchange and structural dynamics of proteins and nucleic acids , 1983, Quarterly Reviews of Biophysics.

[41]  A. Pardi,et al.  Hydrogen bond length and proton NMR chemical shifts in proteins , 1983 .

[42]  Richard R. Ernst,et al.  Investigation of exchange processes by two‐dimensional NMR spectroscopy , 1979 .

[43]  P. D. Johnston,et al.  Real-time solvent exchange studies of the imino and amino protons of yeast phenylalanine transfer RNA by Fourier transform NMR. , 1979, Proceedings of the National Academy of Sciences of the United States of America.

[44]  Kurt Wüthrich,et al.  1H‐nmr parameters of the common amino acid residues measured in aqueous solutions of the linear tetrapeptides H‐Gly‐Gly‐X‐L‐Ala‐OH , 1979 .

[45]  H. Marver,et al.  Microsomal heme oxygenase. Characterization of the enzyme. , 1969, The Journal of biological chemistry.

[46]  Angela Wilks,et al.  Heme Oxygenase Structure and Mechanism , 2000 .

[47]  T. Harris,et al.  Nuclear magnetic resonance methods for the detection and study of low-barrier hydrogen bonds on enzymes. , 1999, Methods in enzymology.

[48]  M. Maines,et al.  The heme oxygenase system: a regulator of second messenger gases. , 1997, Annual review of pharmacology and toxicology.

[49]  L. B. Dugad,et al.  AN INTERPRETIVE BASIS ON THE PROTON NUCLEAR MAGNETIC RESONANCE HYPERFINE SHIFTS FOR STRUCTURE DETERMINATION OF HIGH-SPIN FERRIC HEMOPROTEINS. IMPLICAT IONS FOR THE REVERSIBLE THERMAL UNFOLDING OF FERRICYTOCHROME C' FROM RHODOP SEUDOMONAS PALUSTRIS , 1996 .

[50]  S. Beale Biosynthesis of Cyanobacterial Tetrapyrrole Pigments: Hemes, Chlorophylls, and Phycobilins , 1994 .