Sexual antagonism exerts evolutionarily persistent genomic constraints on sexual differentiation in Drosophila melanogaster

[1]  J. Hesketh,et al.  Rapid evolution of the intersexual genetic correlation for fitness in Drosophila melanogaster , 2016, Evolution; international journal of organic evolution.

[2]  Simon R. Harris,et al.  SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments , 2016, bioRxiv.

[3]  Daniel Wegmann,et al.  An Approximate Markov Model for the Wright–Fisher Diffusion and Its Application to Time Series Data , 2015, Genetics.

[4]  S. Lien,et al.  Sex-dependent dominance at a single locus maintains variation in age at maturity in salmon , 2015, Nature.

[5]  Russell B. Corbett-Detig,et al.  The Drosophila Genome Nexus: A Population Genomic Resource of 623 Drosophila melanogaster Genomes, Including 197 from a Single Ancestral Range Population , 2015, Genetics.

[6]  Tina T. Hu,et al.  A Genomic Map of the Effects of Linked Selection in Drosophila , 2014, PLoS genetics.

[7]  L. Casarini,et al.  The polycystic ovary syndrome evolutionary paradox: a genome-wide association studies-based, in silico, evolutionary explanation. , 2014, The Journal of clinical endocrinology and metabolism.

[8]  R. Gibbs,et al.  Natural variation in genome architecture among 205 Drosophila melanogaster Genetic Reference Panel lines , 2014, Genome research.

[9]  Matthew W. Hahn,et al.  Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow , 2014, Molecular ecology.

[10]  Saurabh Sinha,et al.  Motif Enrichment Tool , 2014, Nucleic Acids Res..

[11]  M. Lercher,et al.  PopGenome: An Efficient Swiss Army Knife for Population Genomic Analyses in R , 2014, Molecular biology and evolution.

[12]  Zhian N. Kamvar,et al.  Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction , 2014, PeerJ.

[13]  D. Hasselquist,et al.  Intralocus Sexual Conflict over Wing Length in a Wild Migratory Bird , 2013, The American Naturalist.

[14]  E. H. Morrow,et al.  Implications of sex-specific selection for the genetic basis of disease , 2013, Evolutionary applications.

[15]  E. H. Morrow,et al.  Two sexes, one genome: the evolutionary dynamics of intralocus sexual conflict , 2013, Ecology and evolution.

[16]  W. Stephan,et al.  Demographic Inference Reveals African and European Admixture in the North American Drosophila melanogaster Population , 2013, Genetics.

[17]  Russell B. Corbett-Detig,et al.  Population Genomics of Sub-Saharan Drosophila melanogaster: African Diversity and Non-African Admixture , 2012, PLoS genetics.

[18]  J. Mank,et al.  Experimental Evolution of a Novel Sexually Antagonistic Allele , 2012, PLoS genetics.

[19]  Tamer Kahveci,et al.  Accessed Terms of Use , 2022 .

[20]  A. Clark,et al.  A General Population Genetic Framework for Antagonistic Selection That Accounts for Demography and Recurrent Mutation , 2012, Genetics.

[21]  Steven L Salzberg,et al.  Fast gapped-read alignment with Bowtie 2 , 2012, Nature Methods.

[22]  Kevin R. Thornton,et al.  The Drosophila melanogaster Genetic Reference Panel , 2012, Nature.

[23]  T. Mappes,et al.  Negative Frequency-Dependent Selection of Sexually Antagonistic Alleles in Myodes glareolus , 2011, Science.

[24]  H. Hakonarson,et al.  SNVer: a statistical tool for variant calling in analysis of pooled or individual next-generation sequencing data , 2011, Nucleic acids research.

[25]  Marcel Martin.  Cutadapt removes adapter sequences from high-throughput sequencing reads , 2011 .

[26]  M. DePristo,et al.  A framework for variation discovery and genotyping using next-generation DNA sequencing data , 2011, Nature Genetics.

[27]  A. Futschik,et al.  PoPoolation: A Toolbox for Population Genetic Analysis of Next Generation Sequencing Data from Pooled Individuals , 2011, PloS one.

[28]  Helga Thorvaldsdóttir,et al.  Integrative Genomics Viewer , 2011, Nature Biotechnology.

[29]  M. DePristo,et al.  The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. , 2010, Genome research.

[30]  W. McLaren,et al.  Bioinformatics Applications Note Databases and Ontologies Deriving the Consequences of Genomic Variants with the Ensembl Api and Snp Effect Predictor , 2022 .

[31]  P. Innocenti,et al.  The Sexually Antagonistic Genes of Drosophila melanogaster , 2010, PLoS biology.

[32]  W. Rice,et al.  Resolving intralocus sexual conflict: genetic mechanisms and time frame. , 2010, The Journal of heredity.

[33]  D. Hall,et al.  Mutation Accumulation, Soft Selection and the Middle-Class Neighborhood , 2009, Genetics.

[34]  Mikael Bodén,et al.  MEME Suite: tools for motif discovery and searching , 2009, Nucleic Acids Res..

[35]  S. Chenoweth,et al.  Intralocus sexual conflict. , 2009, Trends in ecology & evolution.

[36]  Israel Steinfeld,et al.  BMC Bioinformatics BioMed Central , 2008 .

[37]  R. Calsbeek,et al.  Sexually Antagonistic Selection, Sexual Dimorphism, and the Resolution of Intralocus Sexual Conflict , 2009, The American Naturalist.

[38]  W. Rice,et al.  Assessing the extent of genome‐wide intralocus sexual conflict via experimentally enforced gender‐limited selection , 2008, Journal of evolutionary biology.

[39]  J. Dow,et al.  Using FlyAtlas to identify better Drosophila melanogaster models of human disease , 2007, Nature Genetics.

[40]  W. Rice,et al.  Genetic models of homosexuality: generating testable predictions , 2006, Proceedings of the Royal Society B: Biological Sciences.

[41]  Florian Gnad,et al.  Sebida: a database for the functional and evolutionary analysis of genes with sex-biased expression , 2006, Bioinform..

[42]  W. Rice,et al.  Inter-locus antagonistic coevolution as an engine of speciation: Assessment with hemiclonal analysis , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[43]  T. Nomura.  Effective size of populations with unequal sex ratio and variation in mating success , 2002 .

[44]  L. Excoffier,et al.  Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. , 1992, Genetics.

[45]  W. Rice.  SEX CHROMOSOMES AND THE EVOLUTION OF SEXUAL DIMORPHISM , 1984, Evolution; international journal of organic evolution.

[46]  F. M. Stewart,et al.  Regions of stable equilibria for models of differential selection in the two sexes under random mating. , 1977, Genetics.

[47]  Ira M. Hall,et al.  BEDTools: a flexible suite of utilities for comparing genomic features , 2010, Bioinform..

[48]  M. Ashburner,et al.  Historical Biogeography of the Drosophila melanogaster Species Subgroup , 1988 .