Multiple nuclear gene sequences identify phylogenetic species boundaries in the rapidly radiating clade of Mexican ambystomatid salamanders
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[1] E. H. Taylor. New salamanders from Mexico, with a discussion of certain known forms , 1940 .
[2] S. A. Barnett,et al. The major features of evolution , 1955 .
[3] W. Watts,et al. Paleoecological Studies at Lake Patzcuaro on the West-Central Mexican Plateau and at Chalco in the Basin of Mexico , 1982, Quaternary Research.
[4] F. Tajima. Evolutionary relationship of DNA sequences in finite populations. , 1983, Genetics.
[5] H. Shaffer. EVOLUTION IN A PAEDOMORPHIC LINEAGE. I. AN ELECTROPHORETIC ANALYSIS OF THE MEXICAN AMBYSTOMATID SALAMANDERS , 1984, Evolution; international journal of organic evolution.
[6] H. Shaffer. EVOLUTION IN A PAEDOMORPHIC LINEAGE. II. ALLOMETRY AND FORM IN THE MEXICAN AMBYSTOMATID SALAMANDERS , 1984, Evolution; international journal of organic evolution.
[7] R. Hudson,et al. Statistical properties of the number of recombination events in the history of a sample of DNA sequences. , 1985, Genetics.
[8] H. Shaffer,et al. PATTERNS OF VARIATION IN AQUATIC AMBYSTOMATID SALAMANDERS: KINEMATICS OF THE FEEDING MECHANISM , 1985, Evolution; international journal of organic evolution.
[9] John C. Avise,et al. PHYLOGENETIC RELATIONSHIPS OF MITOCHONDRIAL DNA UNDER VARIOUS DEMOGRAPHIC MODELS OF SPECIATION , 1986 .
[10] M. Nei,et al. Relationships between gene trees and species trees. , 1988, Molecular biology and evolution.
[11] F. Tajima. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. , 1989, Genetics.
[12] H. A. Orr,et al. PATTERNS OF SPECIATION IN DROSOPHILA , 1989, Evolution; international journal of organic evolution.
[13] John Alroy,et al. Principles of genealogical concordance in species concepts and biological taxonomy , 1990 .
[14] E. Gittenberger,et al. What about non-adaptive radiation? , 1991 .
[15] W. Li,et al. Statistical tests of neutrality of mutations. , 1993, Genetics.
[16] J. Patton,et al. Paraphyly, polyphyly, and the nature of species boundaries in pocket gophers (Genus Thomomys) , 1994 .
[17] François Rousset,et al. GENEPOP (version 1.2): population genetic software for exact tests and ecumenicism , 1995 .
[18] W. Moore. INFERRING PHYLOGENIES FROM mtDNA VARIATION: MITOCHONDRIAL‐GENE TREES VERSUS NUCLEAR‐GENE TREES , 1995, Evolution; international journal of organic evolution.
[19] S. Voss,et al. PHYLOGENETIC AND MECHANISTIC ANALYSIS OF A DEVELOPMENTALLY INTEGRATED CHARACTER COMPLEX : ALTERNATE LIFE HISTORY MODES IN AMBYSTOMATID SALAMANDERS , 1996 .
[20] S. Voss,et al. What insights into the developmental traits of urodeles does the study of interspecific hybrids provide? , 1996, The International journal of developmental biology.
[22] H. Shaffer,et al. THE POLYTYPIC SPECIES REVISITED: GENETIC DIFFERENTIATION AND MOLECULAR PHYLOGENETICS OF THE TIGER SALAMANDER AMBYSTOMA TIGRINUM (AMPHIBIA: CAUDATA) COMPLEX , 1996, Evolution; international journal of organic evolution.
[23] G. Hoelzer. INFERRING PHYLOGENIES FROM mtDNA VARIATION: MITOCHONDRIAL‐GENE TREES VERSUS NUCLEAR‐GENE TREES REVISITED , 1997, Evolution; international journal of organic evolution.
[24] David Posada,et al. MODELTEST: testing the model of DNA substitution , 1998, Bioinform..
[25] J. Klein,et al. Persistence of neutral polymorphisms in Lake Victoria cichlid fish. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[26] J. Avise,et al. Population structure in the American oyster as inferred by nuclear gene genealogies. , 1998, Molecular biology and evolution.
[27] P. Boag,et al. Phylogenetics of Darwin's Finches: Paraphyly in the Tree-Finches, and Two Divergent Lineages in the Warbler Finch , 1999 .
[28] K. Queiroz. The General Lineage Concept of Species and the Defining Properties of the Species Category , 1999 .
[29] B. Grant,et al. Phylogeny of Darwin's finches as revealed by mtDNA sequences. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[30] T. Kocher,et al. Phylogeny of a rapidly evolving clade: the cichlid fishes of Lake Malawi, East Africa. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[31] Bin Ma,et al. From Gene Trees to Species Trees , 2000, SIAM J. Comput..
[32] R. Highton. DETECTING CRYPTIC SPECIES USING ALLOZYME DATA , 2000 .
[33] K. Crandall,et al. TCS: a computer program to estimate gene genealogies , 2000, Molecular ecology.
[34] J. Wakeley,et al. THE EFFECTS OF SUBDIVISION ON THE GENETIC DIVERGENCE OF POPULATIONS AND SPECIES , 2000, Evolution; international journal of organic evolution.
[35] M. P. Cummings,et al. PAUP* Phylogenetic analysis using parsimony (*and other methods) Version 4 , 2000 .
[36] F. Cipriano,et al. PREDICTING NUCLEAR GENE COALESCENCE FROM MITOCHONDRIAL DATA: THE THREE-TIMES RULE , 2001 .
[37] H. Shaffer,et al. SPATIALLY AUTOCORRELATED DEMOGRAPHY AND INTERPOND DISPERSAL IN THE SALAMANDER AMBYSTOMA CALIFORNIENSE , 2001 .
[38] F. Cipriano,et al. PREDICTING NUCLEAR GENE COALESCENCE FROM MITOCHONDRIAL DATA: THE THREE‐TIMES RULE , 2001, Evolution; international journal of organic evolution.
[39] John P. Huelsenbeck,et al. MRBAYES: Bayesian inference of phylogenetic trees , 2001, Bioinform..
[40] P. Donnelly,et al. A new statistical method for haplotype reconstruction from population data. , 2001, American journal of human genetics.
[41] S. Voss,et al. Conserved vertebrate chromosome segments in the large salamander genome. , 2001, Genetics.
[42] M. Nishida,et al. Phylogenetic relationships and ancient incomplete lineage sorting among cichlid fishes in Lake Tanganyika as revealed by analysis of the insertion of retroposons. , 2001, Molecular biology and evolution.
[43] D. Schluter. Ecology and the origin of species. , 2001, Trends in ecology & evolution.
[44] P. Lewis. A likelihood approach to estimating phylogeny from discrete morphological character data. , 2001, Systematic biology.
[45] M. Hare. Prospects for nuclear gene phylogeography , 2001 .
[46] A. Meyer,et al. Population structure in two sympatric species of the Lake Tanganyika cichlid tribe Eretmodini: evidence for introgression , 2001, Molecular ecology.
[47] G. Turner. The Ecology of Adaptive Radiation , 2001, Heredity.
[48] D. Swofford. PAUP*: Phylogenetic analysis using parsimony (*and other methods), Version 4.0b10 , 2002 .
[49] K Theodorides,et al. Comparison of EST libraries from seven beetle species: towards a framework for phylogenomics of the Coleoptera , 2002, Insect molecular biology.
[50] MOLECULAR CORRELATES OF REPRODUCTIVE ISOLATION , 2002, Evolution; international journal of organic evolution.
[51] K. Shaw. Conflict between nuclear and mitochondrial DNA phylogenies of a recent species radiation: What mtDNA reveals and conceals about modes of speciation in Hawaiian crickets , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[52] R. Hudson,et al. MATHEMATICAL CONSEQUENCES OF THE GENEALOGICAL SPECIES CONCEPT , 2002, Evolution; international journal of organic evolution.
[53] S. Voss,et al. Hybridization between a rare, native tiger salamander (Ambystoma californiense) and its introduced congener , 2003 .
[54] C. A. Machado,et al. The causes of phylogenetic conflict in a classic Drosophila species group , 2003, Proceedings of the Royal Society of London. Series B: Biological Sciences.
[55] G. Hewitt,et al. Nuclear DNA analyses in genetic studies of populations: practice, problems and prospects , 2003, Molecular ecology.
[56] Xavier Messeguer,et al. DnaSP, DNA polymorphism analyses by the coalescent and other methods , 2003, Bioinform..
[57] J. Sites,et al. Sampling strategies for delimiting species: genes, individuals, and populations in the Liolaemus elongatus-kriegi complex (Squamata: Liolaemidae) in Andean-Patagonian South America. , 2003, Systematic biology.
[58] D. J. Funk,et al. Species-Level Paraphyly and Polyphyly: Frequency, Causes, and Consequences, with Insights from Animal Mitochondrial DNA , 2003 .
[59] P. Boursot,et al. Nuclear ribosomal DNA monophyly versus mitochondrial DNA polyphyly in two closely related mite species: the influence of life history and molecular drive , 2003, Proceedings of the Royal Society of London. Series B: Biological Sciences.
[60] D. Nickerson,et al. The utility of single nucleotide polymorphisms in inferences of population history , 2003 .
[61] R. Harrison,et al. Nuclear gene genealogies reveal historical, demographic and selective factors associated with speciation in field crickets. , 2003, Genetics.
[62] B. Grant,et al. INBREEDING AND INTERBREEDING IN DARWIN'S FINCHES , 2003, Evolution; international journal of organic evolution.
[63] R. Hudson,et al. STOCHASTICITY OVERRULES THE “THREE-TIMES RULE”: GENETIC DRIFT, GENETIC DRAFT, AND COALESCENCE TIMES FOR NUCLEAR LOCI VERSUS MITOCHONDRIAL DNA , 2003, Evolution; international journal of organic evolution.
[64] Noah A Rosenberg,et al. THE SHAPES OF NEUTRAL GENE GENEALOGIES IN TWO SPECIES: PROBABILITIES OF MONOPHYLY, PARAPHYLY, AND POLYPHYLY IN A COALESCENT MODEL , 2003, Evolution; international journal of organic evolution.
[65] A MULTILOCUS GENEALOGICAL APPROACH TO PHYLOGENETIC SPECIES RECOGNITION IN THE MODEL EUKARYOTE NEUROSPORA , 2003, Evolution; international journal of organic evolution.
[66] D. Tautz,et al. Patterns of Speciation , 2004 .
[67] Michael P. Cummings,et al. PAUP* [Phylogenetic Analysis Using Parsimony (and Other Methods)] , 2004 .
[68] H. Shaffer,et al. ENVIRONMENT‐DEPENDENT ADMIXTURE DYNAMICS IN A TIGER SALAMANDER HYBRID ZONE , 2004, Evolution; international journal of organic evolution.
[69] H. Shaffer,et al. The molecular phylogenetics of endangerment: cryptic variation and historical phylogeography of the California tiger salamander, Ambystoma californiense , 2004, Molecular ecology.
[70] Steven Poe,et al. BIRDS IN A BUSH: FIVE GENES INDICATE EXPLOSIVE EVOLUTION OF AVIAN ORDERS , 2004, Evolution; international journal of organic evolution.
[71] G. Luikart,et al. SNPs in ecology, evolution and conservation , 2004 .
[72] J. W. Sites,et al. OPERATIONAL CRITERIA FOR DELIMITING SPECIES , 2004 .
[73] Bianca Habermann,et al. From biomedicine to natural history research: EST resources for ambystomatid salamanders , 2004, BMC Genomics.
[74] J. Losos,et al. Partial island submergence and speciation in an adaptive radiation: a multilocus analysis of the Cuban green anoles , 2004, Proceedings of the Royal Society of London. Series B: Biological Sciences.
[75] D. Weisrock,et al. Phylogeographic analysis of mitochondrial gene flow and introgression in the salamander, Plethodon shermani , 2005, Molecular ecology.
[76] LEAKY PREZYGOTIC ISOLATION AND POROUS GENOMES: RAPID INTROGRESSION OF MATERNALLY INHERITED DNA , 2005, Evolution; international journal of organic evolution.
[77] S. Voss,et al. A Comprehensive Expressed Sequence Tag Linkage Map for Tiger Salamander and Mexican Axolotl: Enabling Gene Mapping and Comparative Genomics in Ambystoma , 2005, Genetics.
[78] Deborah A Nickerson,et al. Comprehensive identification and characterization of diallelic insertion-deletion polymorphisms in 330 human candidate genes. , 2005, Human molecular genetics.
[79] S. Voss,et al. Transcriptional and phylogenetic analysis of five complete ambystomatid salamander mitochondrial genomes. , 2005, Gene.