The Role of Synthetic Biology in the Design of Microbial Cell Factories for Biofuel Production

Insecurity in the supply of fossil fuels, volatile fuel prices, and major concerns regarding climate change have sparked renewed interest in the production of fuels from renewable resources. Because of this, the use of biodiesel has grown dramatically during the last few years and is expected to increase even further in the future. Biodiesel production through the use of microbial systems has marked a turning point in the field of biofuels since it is emerging as an attractive alternative to conventional technology. Recent progress in synthetic biology has accelerated the ability to analyze, construct, and/or redesign microbial metabolic pathways with unprecedented precision, in order to permit biofuel production that is amenable to industrial applications. The review presented here focuses specifically on the role of synthetic biology in the design of microbial cell factories for efficient production of biodiesel.

[1]  Richard A. Venditti,et al.  Biodiesel synthesis via homogeneous Lewis acid-catalyzed transesterification , 2009 .

[2]  Jin-Ho Seo,et al.  Conversion of xylose to ethanol by recombinant Saccharomyces cerevisiae containing genes for xylose reductase and xylitol dehydrogenase from Pichia stipitis , 2000 .

[3]  Huimin Zhao,et al.  Yeast Surface Display of Trifunctional Minicellulosomes for Simultaneous Saccharification and Fermentation of Cellulose to Ethanol , 2009, Applied and Environmental Microbiology.

[4]  Peter D. Karp,et al.  EcoCyc: A comprehensive view of Escherichia coli biology , 2008, Nucleic Acids Res..

[5]  Anca Sauciuc,et al.  STATE OF ART OF THE FIRST AND THE SECOND GENERATION OF THE BIODIESEL SYNTHESIS , 2010 .

[6]  Teodoro Espinosa-Solares,et al.  Macroscopic mass and energy balance of a pilot plant anaerobic bioreactor operated under thermophilic conditions , 2006, Applied biochemistry and biotechnology.

[7]  Min Zhang,et al.  Metabolic Engineering of a Pentose Metabolism Pathway in Ethanologenic Zymomonas mobilis , 1995, Science.

[8]  Mo Xian,et al.  Biodiesel production from oleaginous microorganisms , 2009 .

[9]  C. Weber,et al.  Trends and challenges in the microbial production of lignocellulosic bioalcohol fuels , 2010, Applied Microbiology and Biotechnology.

[10]  Brian F Pfleger,et al.  A process for microbial hydrocarbon synthesis: Overproduction of fatty acids in Escherichia coli and catalytic conversion to alkanes , 2010, Biotechnology and bioengineering.

[11]  Teresa M. Mata,et al.  Microalgae for biodiesel production and other applications: A review , 2010 .

[12]  George M Church,et al.  Synthetic biology projects in vitro. , 2006, Genome research.

[13]  S. Sawayama,et al.  Ethanol production from xylose in engineered Saccharomyces cerevisiae strains: current state and perspectives , 2009, Applied Microbiology and Biotechnology.

[14]  Stefano Benni,et al.  Agriculture and Development Processes: Critical Aspects, Potential and Multilevel Analysis of Periurban Landscapes. Part I , 2007 .

[15]  Timothy S. Ham,et al.  Metabolic engineering of microorganisms for biofuels production: from bugs to synthetic biology to fuels. , 2008, Current opinion in biotechnology.

[16]  Andreas Richter,et al.  Quantification and monosaccharide composition of hemicelluloses from different plant functional types. , 2010, Plant physiology and biochemistry : PPB.

[17]  A. Steinbüchel,et al.  A Novel Bifunctional Wax Ester Synthase/Acyl-CoA:Diacylglycerol Acyltransferase Mediates Wax Ester and Triacylglycerol Biosynthesis inAcinetobacter calcoaceticus ADP1* , 2003, The Journal of Biological Chemistry.

[18]  Xuefeng Lu,et al.  Overproduction of free fatty acids in E. coli: implications for biodiesel production. , 2008, Metabolic engineering.

[19]  J. Liao,et al.  Metabolic engineering for advanced biofuels production from Escherichia coli. , 2008, Current opinion in biotechnology.

[20]  Martin Fussenegger,et al.  Mammalian synthetic biology: engineering of sophisticated gene networks. , 2007, Journal of biotechnology.

[21]  A. Demirbas,et al.  Importance of biodiesel as transportation fuel , 2007 .

[22]  Jay D Keasling,et al.  Importance of systems biology in engineering microbes for biofuel production. , 2008, Current opinion in biotechnology.

[23]  Charlotte Schubert,et al.  Can biofuels finally take center stage? , 2006, Nature Biotechnology.

[24]  Z. Cohen,et al.  The effect of phosphate starvation on the lipid and fatty acid composition of the fresh water eustigmatophyte Monodus subterraneus. , 2006, Phytochemistry.

[25]  A. Ahmad,et al.  Microalgae as a sustainable energy source for biodiesel production: A review , 2011 .

[26]  J. Förster,et al.  In silico aided metabolic engineering of Saccharomyces cerevisiae for improved bioethanol production. , 2006, Metabolic engineering.

[27]  Subhash Bhatia,et al.  Feasibility of edible oil vs. non-edible oil vs. waste edible oil as biodiesel feedstock , 2008 .

[28]  Gerhard Knothe,et al.  “Designer” Biodiesel: Optimizing Fatty Ester Composition to Improve Fuel Properties† , 2008 .

[29]  De-hua Liu,et al.  Perspectives of microbial oils for biodiesel production , 2008, Applied Microbiology and Biotechnology.

[30]  Farooq Anwar,et al.  Optimization of alkaline transesterification of rice bran oil for biodiesel production using response surface methodology. , 2009 .

[31]  G. Stephanopoulos Challenges in Engineering Microbes for Biofuels Production , 2007, Science.

[32]  M. K. Gouda,et al.  Single cell oil production by Gordonia sp. DG using agro-industrial wastes , 2008 .

[33]  M. Čertík,et al.  Lipid formation and γ‐linolenic acid production by Mucorales fungi grown on sunflower oil , 1997 .

[34]  Philip T. Pienkos,et al.  Role of pretreatment and conditioning processes on toxicity of lignocellulosic biomass hydrolysates , 2009 .

[35]  E. Nevoigt,et al.  Progress in Metabolic Engineering of Saccharomyces cerevisiae , 2008, Microbiology and Molecular Biology Reviews.

[36]  Ma Yan-ling Microbial oils and its research advance , 2006 .

[37]  Jürgen Pleiss,et al.  The promise of synthetic biology , 2006, Applied Microbiology and Biotechnology.

[38]  M. Penttilä,et al.  Metabolic engineering applications to renewable resource utilization. , 2000, Current opinion in biotechnology.

[39]  C. Ratledge,et al.  The biochemistry and molecular biology of lipid accumulation in oleaginous microorganisms. , 2002, Advances in applied microbiology.

[40]  E. Boles,et al.  A Modified Saccharomyces cerevisiae Strain That Consumes l-Arabinose and Produces Ethanol , 2003, Applied and Environmental Microbiology.

[41]  J. Keasling,et al.  Microbial production of fatty-acid-derived fuels and chemicals from plant biomass , 2010, Nature.

[42]  X. Miao,et al.  Biodiesel production from heterotrophic microalgal oil. , 2006, Bioresource technology.

[43]  T. W. Jeffries,et al.  Metabolic engineering for improved fermentation of pentoses by yeasts , 2004, Applied Microbiology and Biotechnology.

[44]  Michel Morange,et al.  A Critical Perspective on Synthetic Biology , 2009 .

[45]  J. W. Peters,et al.  Engineering algae for biohydrogen and biofuel production. , 2009, Current opinion in biotechnology.

[46]  Y. Chisti,et al.  Botryococcus braunii: A Renewable Source of Hydrocarbons and Other Chemicals , 2002, Critical reviews in biotechnology.

[47]  J. Carioca Biofuels: Problems, challenges and perspectives , 2010, Biotechnology journal.

[48]  Swapnil Chhabra,et al.  Biofuel alternatives to ethanol: pumping the microbial well. , 2008, Trends in biotechnology.

[49]  艾利·S·格罗班,et al.  Production of fatty acids and derivatives thereof having improved aliphatic chain length and saturation characteristics , 2012 .

[50]  A. Demirbas,et al.  Diesel Fuel from Vegetable Oil via Transesterification and Soap Pyrolysis , 2002 .

[51]  Alexander Steinbüchel,et al.  Fatty acid alkyl esters: perspectives for production of alternative biofuels , 2010, Applied Microbiology and Biotechnology.

[52]  M. Rodríguez-Moyá,et al.  Systems biology approaches for the microbial production of biofuels , 2010 .

[53]  M. Penttilä,et al.  Production of ethanol from L-arabinose by Saccharomyces cerevisiae containing a fungal L-arabinose pathway. , 2003, FEMS yeast research.

[54]  Adam M. Feist,et al.  A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information , 2007, Molecular systems biology.

[55]  B. Hahn-Hägerdal,et al.  Endogenous NADPH‐dependent aldose reductase activity influences product formation during xylose consumption in recombinant Saccharomyces cerevisiae , 2004, Yeast.

[56]  Y. Chisti Biodiesel from microalgae. , 2007, Biotechnology advances.

[57]  Marco W Fraaije,et al.  Occurrence and biocatalytic potential of carbohydrate oxidases. , 2006, Advances in applied microbiology.

[58]  B. Hahn-Hägerdal,et al.  Expression of different levels of enzymes from the Pichia stipitis XYL1 and XYL2 genes in Saccharomyces cerevisiae and its effects on product formation during xylose utilisation , 1997, Applied Microbiology and Biotechnology.

[59]  Hung-Chang Chen,et al.  Production of γ‐Linolenic Acid by the Fungus Cunninghamella echinulata CCRC 31840 , 1996 .

[60]  M. Zhang,et al.  Development of an arabinose-fermenting Zymomonas mobilis strain by metabolic pathway engineering , 1996, Applied and environmental microbiology.

[61]  Brennerei Oberhefe,et al.  Fermentation , 1920, Botanical Gazette.

[62]  Rainer Kalscheuer,et al.  Microdiesel: Escherichia coli engineered for fuel production. , 2006, Microbiology.

[63]  L. Ingram,et al.  Genetic engineering of ethanol production in Escherichia coli , 1987, Applied and environmental microbiology.

[64]  K. Shanmugam,et al.  Construction of an Escherichia coli K-12 Mutant for Homoethanologenic Fermentation of Glucose or Xylose without Foreign Genes , 2007, Applied and Environmental Microbiology.

[65]  David Hyman Gordon,et al.  Renewable Energy Resources , 1986 .

[66]  H. Raheman,et al.  Biodiesel production from mahua (Madhuca indica) oil having high free fatty acids , 2005 .

[67]  Christopher M Gowen,et al.  Exploring Biodiversity for Cellulosic Biofuel Production , 2010, Chemistry & biodiversity.

[68]  M. Baigorí,et al.  Mycelium‐bound lipase production from Aspergillus niger MYA 135, and its potential applications for the transesterification of ethanol , 2011, Journal of basic microbiology.

[69]  Rainer Kalscheuer,et al.  Synthesis of Novel Lipids in Saccharomyces cerevisiae by Heterologous Expression of an Unspecific Bacterial Acyltransferase , 2004, Applied and Environmental Microbiology.

[70]  Z. Zhao,et al.  Biodiesel production by direct methanolysis of oleaginous microbial biomass , 2007 .

[71]  Arief Budiman,et al.  Second Generation of Biodiesel Production from Indonesian Jatropha Oil by Continuous Reactive Distillation Process , 2010 .

[72]  A. Steinbüchel,et al.  Triacylglycerols in prokaryotic microorganisms , 2002, Applied Microbiology and Biotechnology.

[73]  U. Rashid,et al.  Jatropha curcas seed oil as a viable source for biodiesel. , 2010 .

[74]  Babu Raman,et al.  Engineered microbial systems for enhanced conversion of lignocellulosic biomass. , 2010, Current opinion in biotechnology.

[75]  J. Liao,et al.  Non-fermentative pathways for synthesis of branched-chain higher alcohols as biofuels , 2008, Nature.

[76]  Yunjun Yan,et al.  Optimization of Lipase-Catalyzed Transesterification of Lard for Biodiesel Production Using Response Surface Methodology , 2010, Applied biochemistry and biotechnology.

[77]  J. V. Gerpen,et al.  Process Optimization of Biodiesel Production Using Alkaline Catalysts , 2006 .

[78]  M Mittelbach,et al.  Conversion of sewage sludge into lipids by Lipomyces starkeyi for biodiesel production. , 2008, Bioresource technology.

[79]  J. Nielsen,et al.  Fuel ethanol production from lignocellulose: a challenge for metabolic engineering and process integration , 2001, Applied Microbiology and Biotechnology.

[80]  S. O. Jekayinfa,et al.  Optimal transesterification duration for biodiesel production from Nigerian palm kernel oil. , 2007 .

[81]  Luis Serrano,et al.  Synthetic biology: promises and challenges , 2007, Molecular systems biology.