Genome-wide identification and characterization of SPL transcription factor family and their evolution and expression profiling analysis in cotton

[1]  Ying-Bo Mao,et al.  Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. , 2017, Molecular plant.

[2]  Z. Chen,et al.  Entire nucleotide sequences of Gossypium raimondii and G. arboreum mitochondrial genomes revealed A-genome species as cytoplasmic donor of the allotetraploid species. , 2017, Plant biology.

[3]  Xueyong Zhang,et al.  Functional Conservation and Divergence among Homoeologs of TaSPL20 and TaSPL21, Two SBP-Box Genes Governing Yield-Related Traits in Hexaploid Wheat1[OPEN] , 2017, Plant Physiology.

[4]  Musa Kavas,et al.  Comparative genome-wide phylogenetic and expression analysis of SBP genes from potato (Solanum tuberosum) , 2017, Comput. Biol. Chem..

[5]  S. Kumari,et al.  Genomic organization, phylogenetic comparison, and expression profiles of the SPL family genes and their regulation in soybean , 2017, Development Genes and Evolution.

[6]  Lili Tu,et al.  MicroRNA 157-targeted SPL genes regulate floral organ size and ovule production in cotton , 2017, BMC Plant Biology.

[7]  Jae-Hoon Jung,et al.  SPL3/4/5 Integrate Developmental Aging and Photoperiodic Signals into the FT-FD Module in Arabidopsis Flowering. , 2016, Molecular plant.

[8]  Ge Gao,et al.  PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants , 2016, Nucleic Acids Res..

[9]  Chaobo Tong,et al.  Genomic identification, characterization and differential expression analysis of SBP-box gene family in Brassica napus , 2016, BMC Plant Biology.

[10]  Gang Wu,et al.  Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana , 2016, PLoS genetics.

[11]  C. Fu,et al.  Switchgrass SBP-box transcription factors PvSPL1 and 2 function redundantly to initiate side tillers and affect biomass yield of energy crop , 2016, Biotechnology for Biofuels.

[12]  W. Chai,et al.  Genome-Wide Identification and Analysis of the SBP-Box Family Genes under Phytophthora capsici Stress in Pepper (Capsicum annuum L.) , 2016, Front. Plant Sci..

[13]  Sudhir Kumar,et al.  MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets. , 2016, Molecular biology and evolution.

[14]  Y. Zhang,et al.  Cloning and characterization of SPL-family genes in the peanut (Arachis hypogaea L.). , 2016, Genetics and molecular research : GMR.

[15]  Y. Ruan,et al.  The genome sequence of Sea-Island cotton (Gossypium barbadense) provides insights into the allopolyploidization and development of superior spinnable fibres , 2015, Scientific Reports.

[16]  Xiaoming Song,et al.  Genome-wide analysis of the SBP-box gene family in Chinese cabbage (Brassica rapa subsp. pekinensis). , 2015, Genome.

[17]  Caiping Cai,et al.  Gossypium barbadense genome sequence provides insight into the evolution of extra-long staple fiber and specialized metabolites , 2015, Scientific Reports.

[18]  N. Chua,et al.  The role of miR156/SPLs modules in Arabidopsis lateral root development. , 2015, The Plant journal : for cell and molecular biology.

[19]  A. Doron-Faigenboim,et al.  Molecular characterization of SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) gene family from Citrus and the effect of fruit load on their expression , 2015, Front. Plant Sci..

[20]  Hai Wang,et al.  The miR156/SPL Module, a Regulatory Hub and Versatile Toolbox, Gears up Crops for Enhanced Agronomic Traits. , 2015, Molecular plant.

[21]  Lei Fang,et al.  Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement , 2015, Nature Biotechnology.

[22]  Lidan Sun,et al.  Identification and expression analysis of the SQUAMOSA promoter-binding protein (SBP)-box gene family in Prunus mume , 2015, Molecular Genetics and Genomics.

[23]  Shuxun Yu,et al.  Genomic organization, differential expression, and functional analysis of the SPL gene family in Gossypium hirsutum , 2015, Molecular Genetics and Genomics.

[24]  Bo Hu,et al.  GSDS 2.0: an upgraded gene feature visualization server , 2014, Bioinform..

[25]  Min Shi,et al.  The miR156-SPL9-DFR pathway coordinates the relationship between development and abiotic stress tolerance in plants. , 2014, The Plant journal : for cell and molecular biology.

[26]  Narmada Thanki,et al.  CDD: NCBI's conserved domain database , 2014, Nucleic Acids Res..

[27]  Peer Bork,et al.  SMART: recent updates, new developments and status in 2015 , 2014, Nucleic Acids Res..

[28]  P. Huijser,et al.  Functional characterisation of Arabidopsis SPL7 conserved protein domains suggests novel regulatory mechanisms in the Cu deficiency response , 2014, BMC Plant Biology.

[29]  Xun Xu,et al.  Genome sequence of the cultivated cotton Gossypium arboreum , 2014, Nature Genetics.

[30]  Caili Li,et al.  Molecular characterization of the SPL gene family in Populus trichocarpa , 2014, BMC Plant Biology.

[31]  F. Nogueira,et al.  microRNA156-targeted SPL/SBP box transcription factors regulate tomato ovary and fruit development. , 2014, The Plant journal : for cell and molecular biology.

[32]  Shu-Dong Zhang,et al.  Genome-Wide Identification and Evolutionary Analysis of the SBP-Box Gene Family in Castor Bean , 2014, PloS one.

[33]  Shuping Xing,et al.  A Conserved KIN17 Curved DNA-Binding Domain Protein Assembles with SQUAMOSA PROMOTER-BINDING PROTEIN-LIKE7 to Adapt Arabidopsis Growth and Development to Limiting Copper Availability[W][OPEN] , 2013, Plant Physiology.

[34]  E. Birney,et al.  Pfam: the protein families database , 2013, Nucleic Acids Res..

[35]  Yi Zheng,et al.  Genome-wide identification and analysis of the SBP-box family genes in apple (Malus × domestica Borkh.). , 2013, Plant physiology and biochemistry : PPB.

[36]  P. Huijser,et al.  SPL8 and miR156-targeted SPL genes redundantly regulate Arabidopsis gynoecium differential patterning. , 2013, The Plant journal : for cell and molecular biology.

[37]  Z. Fei,et al.  Genomic Organization, Phylogenetic Comparison and Differential Expression of the SBP-Box Family Genes in Grape , 2013, PloS one.

[38]  Adi Doron-Faigenboim,et al.  Ecology, Evolution and Organismal Biology Publications Ecology, Evolution and Organismal Biology Repeated Polyploidization of Gossypium Genomes and the Evolution of Spinnable Cotton Fibres , 2022 .

[39]  Tae-Ho Lee,et al.  PGDD: a database of gene and genome duplication in plants , 2012, Nucleic Acids Res..

[40]  John Z. Yu,et al.  The draft genome of a diploid cotton Gossypium raimondii , 2012, Nature Genetics.

[41]  P. Huijser,et al.  Genomic organization, phylogenetic comparison and differential expression of the SBP-box family of transcription factors in tomato , 2012, Planta.

[42]  Jae-Hyung Lee,et al.  The SOC1-SPL module integrates photoperiod and gibberellic acid signals to control flowering time in Arabidopsis. , 2012, The Plant journal : for cell and molecular biology.

[43]  Robert D. Finn,et al.  HMMER web server: interactive sequence similarity searching , 2011, Nucleic Acids Res..

[44]  Kai Guo,et al.  RESEARCH ARTICLE Open Access Expression profiling and integrative analysis of the CESA/CSL superfamily in rice , 2022 .

[45]  P. Huijser,et al.  miR156-Targeted and Nontargeted SBP-Box Transcription Factors Act in Concert to Secure Male Fertility in Arabidopsis[W][OA] , 2010, Plant Cell.

[46]  Steven J. M. Jones,et al.  Circos: an information aesthetic for comparative genomics. , 2009, Genome research.

[47]  Qihui Zhu,et al.  Genome-wide identification and evolutionary analysis of the plant specific SBP-box transcription factor family. , 2008, Gene.

[48]  Chenwu Xu,et al.  Comparative study of SBP-box gene family in Arabidopsis and rice. , 2008, Gene.

[49]  Gang Wu,et al.  Temporal regulation of shoot development in Arabidopsis thaliana by miR156 and its target SPL3 , 2006, Development.

[50]  L. Xiong,et al.  Genomic Organization, Differential Expression, and Interaction of SQUAMOSA Promoter-Binding-Like Transcription Factors and microRNA156 in Rice1[W] , 2006, Plant Physiology.

[51]  Wilfred W. Li,et al.  MEME: discovering and analyzing DNA and protein sequence motifs , 2006, Nucleic Acids Res..

[52]  Kazuo Shinozaki,et al.  A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors. , 2004, Journal of molecular biology.

[53]  P. Huijser,et al.  SPL8, an SBP-Box Gene That Affects Pollen Sac Development in Arabidopsis Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.010678. , 2003, The Plant Cell Online.

[54]  P. Huijser,et al.  A new family of DNA binding proteins includes putative transcriptional regulators of theAntirrhinum majus floral meristem identity geneSQUAMOSA , 1996, Molecular and General Genetics MGG.

[55]  J. Wendel New World tetraploid cottons contain Old World cytoplasm. , 1989, Proceedings of the National Academy of Sciences of the United States of America.

[56]  Caili Li,et al.  Genome-wide analysis and molecular dissection of the SPL gene family in Salvia miltiorrhiza. , 2014, Journal of integrative plant biology.

[57]  Kathleen Marchal,et al.  PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences , 2002, Nucleic Acids Res..

[58]  R D Appel,et al.  Protein identification and analysis tools in the ExPASy server. , 1999, Methods in molecular biology.