Nutrient-responsive regulation determines biodiversity in a colicin-mediated bacterial community

[1]  Madeleine Opitz,et al.  Chemical warfare and survival strategies in bacterial range expansions , 2014, Journal of The Royal Society Interface.

[2]  Bärbel Stecher,et al.  Inflammation Fuels Colicin Ib-Dependent Competition of Salmonella Serovar Typhimurium and E. coli in Enterobacterial Blooms , 2014, PLoS pathogens.

[3]  Felix J. H. Hol,et al.  The effects of chemical interactions and culture history on the colonization of structured habitats by competing bacterial populations , 2014, BMC Microbiology.

[4]  G. Kowalchuk,et al.  Micro-scale determinants of bacterial diversity in soil. , 2013, FEMS microbiology reviews.

[5]  Felix J. H. Hol,et al.  Spatial Structure Facilitates Cooperation in a Social Dilemma: Empirical Evidence from a Bacterial Community , 2013, PloS one.

[6]  Julian Parkhill,et al.  Tracking the establishment of local endemic populations of an emergent enteric pathogen , 2013, Proceedings of the National Academy of Sciences.

[7]  David N. Adamson,et al.  Rapid and robust signaling in the CsrA cascade via RNA–protein interactions and feedback regulation , 2013, Proceedings of the National Academy of Sciences.

[8]  Daniel M. Cornforth,et al.  Competition sensing: the social side of bacterial stress responses , 2013, Nature Reviews Microbiology.

[9]  Mauro Mobilia,et al.  When does cyclic dominance lead to stable spiral waves? , 2012, 1210.8376.

[10]  K. Foster,et al.  Competition, Not Cooperation, Dominates Interactions among Culturable Microbial Species , 2012, Current Biology.

[11]  Milan Hodošček,et al.  Double locking of an Escherichia coli promoter by two repressors prevents premature colicin expression and cell lysis , 2012, Molecular microbiology.

[12]  Otto X. Cordero,et al.  Ecological Populations of Bacteria Act as Socially Cohesive Units of Antibiotic Production and Resistance , 2012, Science.

[13]  Roy Kishony,et al.  Structure and Evolution of Streptomyces Interaction Networks in Soil and In Silico , 2011, PLoS biology.

[14]  S. Hubbell.  The Unified Neutral Theory of Biodiversity and Biogeography (MPB-32) , 2011 .

[15]  D. Kalman,et al.  CsrA and TnaB Coregulate Tryptophanase Activity To Promote Exotoxin-Induced Killing of Caenorhabditis elegansby Enteropathogenic Escherichia coli , 2011, Journal of bacteriology.

[16]  Joshua R. Nahum,et al.  Evolution of restraint in a structured rock–paper–scissors community , 2011, Proceedings of the National Academy of Sciences.

[17]  D. Žgur-Bertok,et al.  Genes regulated by the Escherichia coli SOS repressor LexA exhibit heterogenous expression , 2010, BMC Microbiology.

[18]  J. Gallas,et al.  How community size affects survival chances in cyclic competition games that microorganisms play. , 2010, Physical review. E, Statistical, nonlinear, and soft matter physics.

[19]  Nico Stuurman,et al.  Computer Control of Microscopes Using µManager , 2010, Current protocols in molecular biology.

[20]  Mauro Mobilia,et al.  Spatial rock-paper-scissors models with inhomogeneous reaction rates. , 2010, Physical review. E, Statistical, nonlinear, and soft matter physics.

[21]  K. Chak,et al.  Posttranscriptional repression of the cel gene of the ColE7 operon by the RNA-binding protein CsrA of Escherichia coli , 2010, Nucleic acids research.

[22]  Michel Pleimling,et al.  Mobility and asymmetry effects in one-dimensional rock-paper-scissors games. , 2010, Physical review. E, Statistical, nonlinear, and soft matter physics.

[23]  C. Fuqua,et al.  Bacterial competition: surviving and thriving in the microbial jungle , 2010, Nature Reviews Microbiology.

[24]  Colin Kleanthous,et al.  Energy-dependent Immunity Protein Release during tol-dependent Nuclease Colicin Translocation* , 2009, The Journal of Biological Chemistry.

[25]  C. Alteri,et al.  Fitness of Escherichia coli during Urinary Tract Infection Requires Gluconeogenesis and the TCA Cycle , 2009, PLoS pathogens.

[26]  Andy Gardner,et al.  Spite and virulence in the bacterium Pseudomonas aeruginosa , 2009, Proceedings of the National Academy of Sciences.

[27]  Stefan Grosskinsky Warwick,et al.  Interacting Particle Systems , 2016 .

[28]  M. Riley,et al.  Persistence of colicinogenic Escherichia coli in the mouse gastrointestinal tract , 2009, BMC Microbiology.

[29]  Courtney J. Robinson,et al.  Rules of engagement: interspecies interactions that regulate microbial communities. , 2008, Annual review of microbiology.

[30]  Wolf-Dietrich Hardt,et al.  Self-destructive cooperation mediated by phenotypic noise , 2008, Nature.

[31]  Elizabeth Burrowes,et al.  The post-transcriptional regulator CsrA plays a central role in the adaptation of bacterial pathogens to different stages of infection in animal hosts. , 2008, Microbiology.

[32]  T. Reichenbach,et al.  Mobility promotes and jeopardizes biodiversity in rock–paper–scissors games , 2007, Nature.

[33]  Colin Kleanthous,et al.  Colicin Biology , 2007, Microbiology and Molecular Biology Reviews.

[34]  R. Austin,et al.  Bacterial metapopulations in nanofabricated landscapes , 2006, Proceedings of the National Academy of Sciences.

[35]  D. Relman,et al.  Assembly of the human intestinal microbiota. , 2006, Trends in ecology & evolution.

[36]  Joe E Grissom,et al.  Carbon nutrition of Escherichia coli in the mouse intestine. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[37]  Margaret A. Riley,et al.  Antibiotic-mediated antagonism leads to a bacterial game of rock–paper–scissors in vivo , 2004, Nature.

[38]  G. Moore,et al.  Transcriptional Profiling of Colicin-Induced Cell Death of Escherichia coli MG1655 Identifies Potential Mechanisms by Which Bacteriocins Promote Bacterial Diversity , 2004, Journal of bacteriology.

[39]  C. Harwood,et al.  Expression of colicin factor E2-P9 , 2004, Molecular and General Genetics MGG.

[40]  Michael Zuker,et al.  Mfold web server for nucleic acid folding and hybridization prediction , 2003, Nucleic Acids Res..

[41]  M. Feldman,et al.  Local dispersal promotes biodiversity in a real-life game of rock–paper–scissors , 2002, Nature.

[42]  T. Czárán,et al.  Chemical warfare between microbes promotes biodiversity , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[43]  T. Romeo,et al.  Biofilm Formation and Dispersal under the Influence of the Global Regulator CsrA of Escherichia coli , 2002, Journal of bacteriology.

[44]  M. Riley,et al.  Bacteriocins: evolution, ecology, and application. , 2002, Annual review of microbiology.

[45]  S. Hubbell,et al.  The unified neutral theory of biodiversity and biogeography at age ten. , 2011, Trends in ecology & evolution.

[46]  A. Brune,et al.  Microecology of the termite gut: structure and function on a microscale. , 2000, Current opinion in microbiology.

[47]  Y. Iwasa,et al.  Competition by allelopathy proceeds in traveling waves: colicin-immune strain aids colicin-sensitive strain. , 2000, Theoretical population biology.

[48]  M. Feldgarden,et al.  THE PHENOTYPIC AND FITNESS EFFECTS OF COLICIN RESISTANCE IN ESCHERICHIA COLI K‐12 , 1999, Evolution; international journal of organic evolution.

[49]  M. Riley,et al.  The ecological role of bacteriocins in bacterial competition. , 1999, Trends in microbiology.

[50]  M. Feldgarden,et al.  HIGH LEVELS OF COLICIN RESISTANCE IN ESCHERICHIA COLI , 1998, Evolution; international journal of organic evolution.

[51]  M. Riley,et al.  Temporal changes in the frequency of colicinogeny in Escherichia coli from house mice. , 1998, Microbiology.

[52]  M. Riley,et al.  Molecular mechanisms of bacteriocin evolution. , 1998, Annual review of genetics.

[53]  Levin,et al.  Allelopathy in Spatially Distributed Populations , 1997, Journal of theoretical biology.

[54]  G. Weinstock,et al.  Increased production of colicin E1 in stationary phase , 1996, Journal of bacteriology.

[55]  M. Gong,et al.  Identification and molecular characterization of csrA, a pleiotropic gene from Escherichia coli that affects glycogen biosynthesis, gluconeogenesis, cell size, and surface properties , 1993, Journal of bacteriology.

[56]  M. Riley,et al.  A survey of Col plasmids in natural isolates of Escherichia coli and an investigation into the stability of Col-plasmid lineages. , 1992, Journal of general microbiology.

[57]  T. Liggett.  Interacting Particle Systems , 1985 .

[58]  A. Pugsley,et al.  The BtuB Group Col Plasmids and Homology Between the Colicins They Encode , 1982, Journal of bacteriology.

[59]  L. Chao,et al.  Structured habitats and the evolution of anticompetitor toxins in bacteria. , 1981, Proceedings of the National Academy of Sciences of the United States of America.

[60]  K. G. Hardy.  Colicinogeny and related phenomena. , 1975, Bacteriological reviews.

[61]  M. Gilpin,et al.  Interference competition and niche theory. , 1974, Proceedings of the National Academy of Sciences of the United States of America.

[62]  R. Gibbons,et al.  Inactivation of Bacteriocins in the Intestinal Canal and Oral Cavity , 1969, Journal of bacteriology.

[63]  V. M. Young,et al.  Interaction in the Germfree Mouse Intestine of Colicinogenic and Colicin-Sensitive Microorganisms , 1969, Proceedings of the Society for Experimental Biology and Medicine. Society for Experimental Biology and Medicine.