Molecular mechanisms linking the evolutionary conserved TORC1-Sch9 nutrient signalling branch to lifespan regulation in Saccharomyces cerevisiae.

The knowledge on the molecular aspects regulating ageing in eukaryotic organisms has benefitted greatly from studies using the budding yeast Saccharomyces cerevisiae. Indeed, many aspects involved in the control of lifespan appear to be well conserved among species. Of these, the lifespan-extending effects of calorie restriction (CR) and downregulation of nutrient signalling through the target of rapamycin (TOR) pathway are prime examples. Here, we present an overview on the molecular mechanisms by which these interventions mediate lifespan extension in yeast. Several models have been proposed in the literature, which should be seen as complementary, instead of contradictory. Results indicate that CR mediates a large amount of its effect by downregulating signalling through the TORC1-Sch9 branch. In addition, we note that Sch9 is more than solely a downstream effector of TORC1, and documented connections with sphingolipid metabolism may be particularly interesting for future research on ageing mechanisms. As Sch9 comprises the yeast orthologue of the mammalian PKB/Akt and S6K1 kinases, future studies in yeast may continue to serve as an attractive model to elucidate conserved mechanisms involved in ageing and age-related diseases in humans.

[1]  W. Burhans,et al.  DNA replication stress-induced loss of reproductive capacity in S. cerevisiae and its inhibition by caloric restriction , 2013, Cell cycle.

[2]  J. Aris,et al.  Autophagy is required for extension of yeast chronological life span by rapamycin , 2009, Autophagy.

[3]  J S Valentine,et al.  Superoxide Dismutase Activity Is Essential for Stationary Phase Survival in Saccharomyces cerevisiae , 1996, The Journal of Biological Chemistry.

[4]  J. Thorner,et al.  Differential roles of PDK1- and PDK2-phosphorylation sites in the yeast AGC kinases Ypk1, Pkc1 and Sch9. , 2004, Microbiology.

[5]  Kathleen Marchal,et al.  PKA and Sch9 control a molecular switch important for the proper adaptation to nutrient availability , 2004, Molecular microbiology.

[6]  Ruedi Aebersold,et al.  Yeast endosulfines control entry into quiescence and chronological life span by inhibiting protein phosphatase 2A. , 2013, Cell reports.

[7]  Linda Partridge,et al.  Minireview Stress-response Hormesis and Aging: ''that Which Does Not Kill Us Makes Us Stronger'' Figure 1. Dose-response Curve of a Treatment with a Hormetic Effect Minireview Cell Metabolism , 2022 .

[8]  C. Leeuwenburgh,et al.  Autophagy and leucine promote chronological longevity and respiration proficiency during calorie restriction in yeast , 2013, Experimental Gerontology.

[9]  J. Broach,et al.  Initiation of the TORC1-regulated G0 program requires Igo1/2, which license specific mRNAs to evade degradation via the 5'-3' mRNA decay pathway. , 2010, Molecular cell.

[10]  T. Powers TOR signaling and S6 kinase 1: Yeast catches up. , 2007, Cell metabolism.

[11]  Margaret Werner-Washburne,et al.  The genomics of yeast responses to environmental stress and starvation , 2002, Functional & Integrative Genomics.

[12]  W. Burhans,et al.  Acetic acid effects on aging in budding yeast: Are they relevant to aging in higher eukaryotes? , 2009, Cell Cycle.

[13]  Serguei Sokol,et al.  Investigating the caffeine effects in the yeast Saccharomyces cerevisiae brings new insights into the connection between TOR, PKC and Ras/cAMP signalling pathways , 2006, Molecular microbiology.

[14]  Mark Skehel,et al.  Greatwall Phosphorylates an Inhibitor of Protein Phosphatase 2Α That Is Essential for Mitosis , 2010, Science.

[15]  C. D. Virgilio,et al.  The essence of yeast quiescence , 2012 .

[16]  Nicolas Panchaud,et al.  The Vam6 GEF controls TORC1 by activating the EGO complex. , 2009, Molecular cell.

[17]  W. Oppliger,et al.  TORC1-regulated protein kinase Npr1 phosphorylates Orm to stimulate complex sphingolipid synthesis , 2013, Molecular biology of the cell.

[18]  S. Oliver,et al.  The Transcription Activity of Gis1 Is Negatively Modulated by Proteasome-mediated Limited Proteolysis* , 2009, The Journal of Biological Chemistry.

[19]  M. Goebl,et al.  Nutrient Sensing Kinases PKA and Sch9 Phosphorylate the Catalytic Domain of the Ubiquitin-Conjugating Enzyme Cdc34 , 2011, PloS one.

[20]  E. Cabiscol,et al.  The FOX transcription factor Hcm1 regulates oxidative metabolism in response to early nutrient limitation in yeast. Role of Snf1 and Tor1/Sch9 kinases. , 2013, Biochimica et biophysica acta.

[21]  Jan Komorowski,et al.  Gis1 and Rph1 Regulate Glycerol and Acetate Metabolism in Glucose Depleted Yeast Cells , 2012, PloS one.

[22]  D. Sabatini,et al.  Ragulator-Rag Complex Targets mTORC1 to the Lysosomal Surface and Is Necessary for Its Activation by Amino Acids , 2010, Cell.

[23]  G. Shadel,et al.  Extension of chronological life span by reduced TOR signaling requires down-regulation of Sch9p and involves increased mitochondrial OXPHOS complex density , 2009, Aging.

[24]  C. Gregg,et al.  Effect of calorie restriction on the metabolic history of chronologically aging yeast , 2009, Experimental Gerontology.

[25]  Linda Partridge,et al.  Extending Healthy Life Span—From Yeast to Humans , 2010, Science.

[26]  T. Tai,et al.  Acetylation of Yeast AMPK Controls Intrinsic Aging Independently of Caloric Restriction , 2011, Cell.

[27]  W. Burhans,et al.  Longevity mutation in SCH9 prevents recombination errors and premature genomic instability in a Werner/Bloom model system , 2008, The Journal of cell biology.

[28]  T. Boller,et al.  Saccharomyces cerevisiae cAMP-dependent protein kinase controls entry into stationary phase through the Rim15p protein kinase. , 1998, Genes & development.

[29]  W. Burhans,et al.  Caloric restriction or catalase inactivation extends yeast chronological lifespan by inducing H2O2 and superoxide dismutase activity , 2010, Proceedings of the National Academy of Sciences.

[30]  Frank Sinner,et al.  Induction of autophagy by spermidine promotes longevity , 2009, Nature Cell Biology.

[31]  M. Emond,et al.  Correction: Disruption of Protein Kinase A in Mice Enhances Healthy Aging , 2010, PLoS ONE.

[32]  Janet M. Thornton,et al.  Ribosomal Protein S6 Kinase 1 Signaling Regulates Mammalian Life Span , 2009, Science.

[33]  A. Panek,et al.  Cytotoxicity Mechanism of Two Naphthoquinones (Menadione and Plumbagin) in Saccharomyces cerevisiae , 2008, PloS one.

[34]  Yong Pan,et al.  Mitochondria, reactive oxygen species, and chronological aging: A message from yeast , 2011, Experimental Gerontology.

[35]  Yu Jiang,et al.  The yeast phosphotyrosyl phosphatase activator is part of the Tap42-phosphatase complexes. , 2005, Molecular biology of the cell.

[36]  Ivo Pedruzzi,et al.  Rim15 and the crossroads of nutrient signalling pathways in Saccharomyces cerevisiae , 2006, Cell Division.

[37]  Lin Yan,et al.  Type 5 Adenylyl Cyclase Disruption Increases Longevity and Protects Against Stress , 2007, Cell.

[38]  J. Broach,et al.  Tor proteins and protein phosphatase 2A reciprocally regulate Tap42 in controlling cell growth in yeast , 1999, The EMBO journal.

[39]  P. Piper Maximising the yeast chronological lifespan. , 2012, Sub-cellular biochemistry.

[40]  M. Whiteway,et al.  Increased Respiration in the sch9Δ Mutant Is Required for Increasing Chronological Life Span but Not Replicative Life Span , 2008, Eukaryotic Cell.

[41]  M. Hall,et al.  Target of Rapamycin (TOR) in Nutrient Signaling and Growth Control , 2011, Genetics.

[42]  W. Burhans,et al.  Growth signaling promotes chronological aging in budding yeast by inducing superoxide anions that inhibit quiescence , 2010, Aging.

[43]  Robbie Loewith,et al.  Sch9 is a major target of TORC1 in Saccharomyces cerevisiae. , 2007, Molecular cell.

[44]  Kuninori Suzuki Selective autophagy in budding yeast , 2012, Cell Death and Differentiation.

[45]  M. Ristow,et al.  How increased oxidative stress promotes longevity and metabolic health: The concept of mitochondrial hormesis (mitohormesis) , 2010, Experimental Gerontology.

[46]  I. Pedruzzi,et al.  Regulation of G0 entry by the Pho80–Pho85 cyclin–CDK complex , 2005, The EMBO journal.

[47]  Chao Cheng,et al.  Sir2 Blocks Extreme Life-Span Extension , 2005, Cell.

[48]  Susan M. Young,et al.  The proteomics of quiescent and nonquiescent cell differentiation in yeast stationary-phase cultures , 2011, Molecular biology of the cell.

[49]  Chao Cheng,et al.  Life Span Extension by Calorie Restriction Depends on Rim15 and Transcription Factors Downstream of Ras/PKA, Tor, and Sch9 , 2007, PLoS genetics.

[50]  Claudio De Virgilio,et al.  Life in the midst of scarcity: adaptations to nutrient availability in Saccharomyces cerevisiae , 2010, Current Genetics.

[51]  Ruedi Aebersold,et al.  Characterization of the rapamycin-sensitive phosphoproteome reveals that Sch9 is a central coordinator of protein synthesis. , 2009, Genes & development.

[52]  Jeffrey S. Smith,et al.  Calorie restriction extends the chronological lifespan of Saccharomyces cerevisiae independently of the Sirtuins , 2007, Aging cell.

[53]  Matt Kaeberlein,et al.  Extension of chronological life span in yeast by decreased TOR pathway signaling. , 2006, Genes & development.

[54]  M. Zimmermann,et al.  Calendar life span versus budding lifespan of Saccharomyces cerevisiae , 1980, Mechanisms of Ageing and Development.

[55]  F. Madia,et al.  A simple model system for age-dependent DNA damage and cancer , 2007, Mechanisms of Ageing and Development.

[56]  Keshav K. Singh,et al.  DNA Replication Stress Is a Determinant of Chronological Lifespan in Budding Yeast , 2007, PloS one.

[57]  David M. Sabatini,et al.  The Rag GTPases Bind Raptor and Mediate Amino Acid Signaling to mTORC1 , 2008, Science.

[58]  Stephen Garrett,et al.  Multiple roles of Tap42 in mediating rapamycin-induced transcriptional changes in yeast. , 2003, Molecular cell.

[59]  Kathleen Marchal,et al.  Genome-wide expression analysis reveals TORC1-dependent and -independent functions of Sch9. , 2008, FEMS yeast research.

[60]  J. Crespo,et al.  Two TOR complexes, only one of which is rapamycin sensitive, have distinct roles in cell growth control. , 2002, Molecular cell.

[61]  J. Broach,et al.  Protein kinase A and Sch9 cooperatively regulate induction of autophagy in Saccharomyces cerevisiae. , 2007, Molecular biology of the cell.

[62]  Eric D. Spear,et al.  Structural conservation of components in the amino acid sensing branch of the TOR pathway in yeast and mammals. , 2010, Journal of molecular biology.

[63]  D. Botstein,et al.  Genomic expression programs in the response of yeast cells to environmental changes. , 2000, Molecular biology of the cell.

[64]  M. Werner-Washburne,et al.  Characterization of differentiated quiescent and nonquiescent cells in yeast stationary-phase cultures. , 2007, Molecular biology of the cell.

[65]  M. Jacquet,et al.  Msn2p and Msn4p Control a Large Number of Genes Induced at the Diauxic Transition Which Are Repressed by Cyclic AMP inSaccharomyces cerevisiae , 1998, Journal of bacteriology.

[66]  M. Jacquet,et al.  Hyperphosphorylation of Msn2p and Msn4p in response to heat shock and the diauxic shift is inhibited by cAMP in Saccharomyces cerevisiae. , 2000, Microbiology.

[67]  Jia Hu,et al.  Oncogene homologue Sch9 promotes age-dependent mutations by a superoxide and Rev1/Polζ-dependent mechanism , 2009, The Journal of cell biology.

[68]  Y. Kamada Prime-numbered Atg proteins act at the primary step in autophagy, Unphosphorylatable Atg13 can induce autophagy without TOR inactivation , 2010, Autophagy.

[69]  Gonghong Yan,et al.  Rapamycin activates Tap42‐associated phosphatases by abrogating their association with Tor complex 1 , 2006, The EMBO journal.

[70]  V. Longo Mutations in signal transduction proteins increase stress resistance and longevity in yeast, nematodes, fruit flies, and mammalian neuronal cells , 1999, Neurobiology of Aging.

[71]  W. Burhans,et al.  DNA damage and DNA replication stress in yeast models of aging. , 2012, Sub-cellular biochemistry.

[72]  W. H. Mager,et al.  A search in the genome of Saccharomyces cerevisiae for genes regulated via stress response elements , 1998, Yeast.

[73]  Michael N. Hall,et al.  The TOR signalling pathway controls nuclear localization of nutrient-regulated transcription factors , 1999, Nature.

[74]  Gonghong Yan,et al.  The TOR complex 1 is a direct target of Rho1 GTPase. , 2012, Molecular cell.

[75]  B Hamilton,et al.  Nuclear localization of the C2H2 zinc finger protein Msn2p is regulated by stress and protein kinase A activity. , 1998, Genes & development.

[76]  Kazuya Nagano,et al.  Tor-Mediated Induction of Autophagy via an Apg1 Protein Kinase Complex , 2000, The Journal of cell biology.

[77]  Andrew Burgess,et al.  The Substrate of Greatwall Kinase, Arpp19, Controls Mitosis by Inhibiting Protein Phosphatase 2A , 2010, Science.

[78]  Marco Pahor,et al.  Rapamycin fed late in life extends lifespan in genetically heterogeneous mice , 2009, Nature.

[79]  F. Reggiori,et al.  Regulation of autophagy in yeast Saccharomyces cerevisiae. , 2009, Biochimica et biophysica acta.

[80]  Lei M. Li,et al.  Tor1/Sch9-Regulated Carbon Source Substitution Is as Effective as Calorie Restriction in Life Span Extension , 2009, PLoS genetics.

[81]  J. Thevelein,et al.  Yeast 3-Phosphoinositide-dependent Protein Kinase-1 (PDK1) Orthologs Pkh1–3 Differentially Regulate Phosphorylation of Protein Kinase A (PKA) and the Protein Kinase B (PKB)/S6K Ortholog Sch9* , 2011, The Journal of Biological Chemistry.

[82]  J. Backer,et al.  mTORC1 signals from late endosomes: Taking a TOR of the endocytic system , 2010, Cell cycle.

[83]  Mike Tyers,et al.  Sch9 regulates ribosome biogenesis via Stb3, Dot6 and Tod6 and the histone deacetylase complex RPD3L , 2011, The EMBO journal.

[84]  M. A. Surma,et al.  Flexibility of a Eukaryotic Lipidome – Insights from Yeast Lipidomics , 2012, PloS one.

[85]  K. Arndt,et al.  Nutrients, via the Tor proteins, stimulate the association of Tap42 with type 2A phosphatases. , 1996, Genes & development.

[86]  S. Ohlmeier,et al.  Yeast protein expression profile during acetic acid‐induced apoptosis indicates causal involvement of the TOR pathway , 2009, Proteomics.

[87]  Robbie Loewith,et al.  Caffeine extends yeast lifespan by targeting TORC1 , 2008, Molecular microbiology.

[88]  L. Breeden,et al.  Xbp1, a stress-induced transcriptional repressor of the Saccharomyces cerevisiae Swi4/Mbp1 family , 1997, Molecular and cellular biology.

[89]  T. Nyström,et al.  The role of mitochondria in the aging processes of yeast. , 2012, Sub-cellular biochemistry.

[90]  B. Kennedy,et al.  Replicative aging in yeast: the means to the end. , 2008, Annual review of cell and developmental biology.

[91]  Nicholas D Bonawitz,et al.  Reduced TOR signaling extends chronological life span via increased respiration and upregulation of mitochondrial gene expression. , 2007, Cell metabolism.

[92]  R. C. Dickson,et al.  Down-Regulating Sphingolipid Synthesis Increases Yeast Lifespan , 2012, PLoS genetics.

[93]  Anthony D. Aragon,et al.  Isolation of quiescent and nonquiescent cells from yeast stationary-phase cultures , 2006, The Journal of cell biology.

[94]  A. Diaspro,et al.  SOD2 functions downstream of Sch9 to extend longevity in yeast. , 2003, Genetics.

[95]  D. Harman Free radical theory of aging: dietary implications , 1972 .

[96]  C. Meisinger,et al.  Apoptosis in yeast: triggers, pathways, subroutines , 2010, Cell Death and Differentiation.

[97]  H. Jungwirth,et al.  Chronological aging leads to apoptosis in yeast , 2004, The Journal of cell biology.

[98]  D. Harman Aging: a theory based on free radical and radiation chemistry. , 1956, Journal of gerontology.

[99]  R. Lester,et al.  Iron, glucose and intrinsic factors alter sphingolipid composition as yeast cells enter stationary phase. , 2013, Biochimica et biophysica acta.

[100]  Joseph B. Williams,et al.  The control of the balance between ceramide and sphingosine-1-phosphate by sphingosine kinase: oxidative stress and the seesaw of cell survival and death. , 2012, Comparative biochemistry and physiology. Part B, Biochemistry & molecular biology.

[101]  R. Mortimer,et al.  Life Span of Individual Yeast Cells , 1959, Nature.

[102]  A. Hinnebusch Translational regulation of GCN4 and the general amino acid control of yeast. , 2005, Annual review of microbiology.

[103]  R. C. Dickson Roles for sphingolipids in Saccharomyces cerevisiae. , 2010, Advances in experimental medicine and biology.

[104]  Ke Liu,et al.  The Sphingoid Long Chain Base Phytosphingosine Activates AGC-type Protein Kinases in Saccharomyces cerevisiae Including Ypk1, Ypk2, and Sch9* , 2005, Journal of Biological Chemistry.

[105]  Nicolas Hulo,et al.  The Novel Yeast PAS Kinase Rim15 Orchestrates G0-Associated Antioxidant Defense Mechanisms , 2004, Cell cycle.

[106]  J. Aris,et al.  Autophagy and amino acid homeostasis are required for chronological longevity in Saccharomyces cerevisiae , 2009, Aging cell.

[107]  G. Shadel,et al.  Regulation of yeast chronological life span by TORC1 via adaptive mitochondrial ROS signaling. , 2011, Cell metabolism.

[108]  V. Longo,et al.  Regulation of Longevity and Stress Resistance by Sch9 in Yeast , 2001, Science.

[109]  Gemma Reverter-Branchat,et al.  The Forkhead Transcription Factor Hcm1 Promotes Mitochondrial Biogenesis and Stress Resistance in Yeast* , 2010, The Journal of Biological Chemistry.

[110]  J. Valentine,et al.  Mitochondrial superoxide decreases yeast survival in stationary phase. , 1999, Archives of biochemistry and biophysics.

[111]  I. Willis,et al.  Regulation of RNA Polymerase III Transcription Involves SCH9-dependent and SCH9-independent Branches of the Target of Rapamycin (TOR) Pathway* , 2009, Journal of Biological Chemistry.

[112]  Y. Ohsumi,et al.  Starvation Induced Cell Death in Autophagy-Defective Yeast Mutants Is Caused by Mitochondria Dysfunction , 2011, PloS one.

[113]  G. Kroemer,et al.  Spermidine: A novel autophagy inducer and longevity elixir , 2010, Autophagy.

[114]  Ivo Pedruzzi,et al.  TOR and PKA signaling pathways converge on the protein kinase Rim15 to control entry into G0. , 2003, Molecular cell.

[115]  I. Pedruzzi,et al.  Saccharomyces cerevisiae Ras/cAMP pathway controls post‐diauxic shift element‐dependent transcription through the zinc finger protein Gis1 , 2000, The EMBO journal.

[116]  M. Mendenhall,et al.  Regulation of Cdc28 Cyclin-Dependent Protein Kinase Activity during the Cell Cycle of the Yeast Saccharomyces cerevisiae , 1998, Microbiology and Molecular Biology Reviews.

[117]  V. Longo,et al.  The chronological life span of Saccharomyces cerevisiae , 2003, Methods in molecular biology.

[118]  V. Longo,et al.  Visions & Reflections¶Regulation of longevity and stress resistance: a molecular strategy conserved from yeast to humans? , 2002, Cellular and Molecular Life Sciences CMLS.

[119]  T. P. Neufeld,et al.  Regulation of TORC1 by Rag GTPases in nutrient response , 2008, Nature Cell Biology.

[120]  Christopher J. Murakami,et al.  A molecular mechanism of chronological aging in yeast , 2009, Cell cycle.

[121]  A. Diaspro,et al.  Superoxide is a mediator of an altruistic aging program in Saccharomyces cerevisiae , 2004, The Journal of cell biology.