QuaSI: Quantile Sparse Image Prior for Spatio-Temporal Denoising of Retinal OCT Data

Optical coherence tomography (OCT) enables high-resolution and non-invasive 3D imaging of the human retina but is inherently impaired by speckle noise. This paper introduces a spatio-temporal denoising algorithm for OCT data on a B-scan level using a novel quantile sparse image (QuaSI) prior. To remove speckle noise while preserving image structures of diagnostic relevance, we implement our QuaSI prior via median filter regularization coupled with a Huber data fidelity model in a variational approach. For efficient energy minimization, we develop an alternating direction method of multipliers (ADMM) scheme using a linearization of median filtering. Our spatio-temporal method can handle both, denoising of single B-scans and temporally consecutive B-scans, to gain volumetric OCT data with enhanced signal-to-noise ratio. Our algorithm based on 4 B-scans only achieved comparable performance to averaging 13 B-scans and outperformed other current denoising methods.

[1]  Alessandro Foi,et al.  Image Denoising by Sparse 3-D Transform-Domain Collaborative Filtering , 2007, IEEE Transactions on Image Processing.

[2]  Alexander Wong,et al.  General Bayesian estimation for speckle noise reduction in optical coherence tomography retinal imagery. , 2010, Optics express.

[3]  Li Bai,et al.  Denoising optical coherence tomography using second order total generalized variation decomposition , 2016, Biomed. Signal Process. Control..

[4]  Thomas Brox,et al.  On Iteratively Reweighted Algorithms for Nonsmooth Nonconvex Optimization in Computer Vision , 2015, SIAM J. Imaging Sci..

[5]  Aydogan Ozcan,et al.  Speckle reduction in optical coherence tomography images using digital filtering. , 2007, Journal of the Optical Society of America. A, Optics, image science, and vision.

[6]  Tom Goldstein,et al.  The Split Bregman Method for L1-Regularized Problems , 2009, SIAM J. Imaging Sci..

[7]  Dacheng Tao,et al.  Speckle Reduction in Optical Coherence Tomography by Image Registration and Matrix Completion , 2014, MICCAI.

[8]  Joachim Hornegger,et al.  Computer-Aided Diagnostics and Pattern Recognition: Automated Glaucoma Detection , 2015 .

[9]  Deqing Sun,et al.  Blind Image Deblurring Using Dark Channel Prior , 2016, 2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[10]  Shutao Li,et al.  Sparsity based denoising of spectral domain optical coherence tomography images , 2012, Biomedical optics express.

[11]  H. M. Salinas,et al.  Comparison of PDE-Based Nonlinear Diffusion Approaches for Image Enhancement and Denoising in Optical Coherence Tomography , 2007, IEEE Transactions on Medical Imaging.

[12]  A. Fercher,et al.  Speckle reduction in optical coherence tomography by frequency compounding. , 2003, Journal of biomedical optics.

[13]  Joachim Hornegger,et al.  Wavelet denoising of multiframe optical coherence tomography data , 2012, Biomedical optics express.

[14]  Chen D. Lu,et al.  Phase-sensitive swept-source optical coherence tomography imaging of the human retina with a vertical cavity surface-emitting laser light source. , 2013, Optics letters.

[15]  Michael Elad,et al.  The Little Engine That Could: Regularization by Denoising (RED) , 2016, SIAM J. Imaging Sci..