Gene Regulatory Networks

[1]  T. Gregory Dewey,et al.  Cluster Analysis of Dynamic Parameters of Gene Expression , 2003, J. Bioinform. Comput. Biol..

[2]  Satoru Miyano,et al.  Dynamic Bayesian Network and Nonparametric Regression for Nonlinear Modeling of Gene Networks from Time Series Gene Expression Data , 2003, CMSB.

[3]  S. Teichmann,et al.  Evolution of transcription factors and the gene regulatory network in Escherichia coli. , 2003, Nucleic acids research.

[4]  Satoru Miyano,et al.  Inferring Gene Regulatory Networks from Time-Ordered Gene Expression Data of Bacillus Subtilis Using Differential Equations , 2002, Pacific Symposium on Biocomputing.

[5]  Satoru Miyano,et al.  Inferring Gene Regulatory Networks from Time-Ordered Gene Expression Data Using Differential Equations , 2002, Discovery Science.

[6]  David J. Galas,et al.  A duplication growth model of gene expression networks , 2002, Bioinform..

[7]  Nicola J. Rinaldi,et al.  Transcriptional Regulatory Networks in Saccharomyces cerevisiae , 2002, Science.

[8]  Jesper Tegnér,et al.  Reverse engineering gene networks using singular value decomposition and robust regression , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[9]  S. Shen-Orr,et al.  Network motifs in the transcriptional regulation network of Escherichia coli , 2002, Nature Genetics.

[10]  Ash A. Alizadeh,et al.  Stereotyped and specific gene expression programs in human innate immune responses to bacteria , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[11]  Andrey Rzhetsky,et al.  Birth of scale-free molecular networks and the number of distinct DNA and protein domains per genome , 2001, Bioinform..

[12]  Nicola J. Rinaldi,et al.  Serial Regulation of Transcriptional Regulators in the Yeast Cell Cycle , 2001, Cell.

[13]  A. Wagner.  The yeast protein interaction network evolves rapidly and contains few redundant duplicate genes. , 2001, Molecular biology and evolution.

[14]  Albert-László Barabási,et al.  Statistical mechanics of complex networks , 2001, ArXiv.

[15]  R. Ozawa,et al.  A comprehensive two-hybrid analysis to explore the yeast protein interactome , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[16]  S. Strogatz.  Exploring complex networks , 2001, Nature.

[17]  David J. Galas,et al.  Dynamic models of gene expression and classification , 2001, Functional & Integrative Genomics.

[18]  J. V. Moran,et al.  Initial sequencing and analysis of the human genome. , 2001, Nature.

[19]  Neal S. Holter,et al.  Dynamic modeling of gene expression data. , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[20]  S. N. Dorogovtsev,et al.  Scaling properties of scale-free evolving networks: continuous approach. , 2000, Physical review. E, Statistical, nonlinear, and soft matter physics.

[21]  Per Bak,et al.  Small Worlds: The Dynamics of Networks between Order and Randomness, by Duncan J. Watts , 2000 .

[22]  R. Albert,et al.  The large-scale organization of metabolic networks , 2000, Nature.

[23]  Patrik D'haeseleer,et al.  Genetic network inference: from co-expression clustering to reverse engineering , 2000, Bioinform..

[24]  D. Fell,et al.  The small world inside large metabolic networks , 2000, Proceedings of the Royal Society of London. Series B: Biological Sciences.

[25]  S. Redner,et al.  Connectivity of growing random networks. , 2000, Physical review letters.

[26]  P. Reymond,et al.  Differential Gene Expression in Response to Mechanical Wounding and Insect Feeding in Arabidopsis , 2000, Plant Cell.

[27]  James R. Knight,et al.  A comprehensive analysis of protein–protein interactions in Saccharomyces cerevisiae , 2000, Nature.

[28]  L. Amaral,et al.  Classes of small-world networks. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[29]  Laurie J. Heyer,et al.  Exploring expression data: identification and analysis of coexpressed genes. , 1999, Genome research.

[30]  Albert,et al.  Emergence of scaling in random networks , 1999, Science.

[31]  K. H. Wolfe,et al.  Updated map of duplicated regions in the yeast genome. , 1999, Gene.

[32]  Jie Wu,et al.  Small Worlds: The Dynamics of Networks between Order and Randomness , 2003 .

[33]  Patrik D'haeseleer,et al.  Linear Modeling of mRNA Expression Levels During CNS Development and Injury , 1998, Pacific Symposium on Biocomputing.

[34]  Ting Chen,et al.  Modeling Gene Expression with Differential Equations , 1998, Pacific Symposium on Biocomputing.

[35]  Michael Ruogu Zhang,et al.  Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. , 1998, Molecular biology of the cell.

[36]  P. Brown,et al.  Exploring the metabolic and genetic control of gene expression on a genomic scale. , 1997, Science.

[37]  Joel E. Cohen,et al.  Threshold phenomena in random structures , 1988, Discret. Appl. Math..

[38]  Dr. Susumu Ohno.  Evolution by Gene Duplication , 1970, Springer Berlin Heidelberg.

[39]  S. Kauffman.  Metabolic stability and epigenesis in randomly constructed genetic nets. , 1969, Journal of theoretical biology.