Determination of the Structures of Symmetric Protein Oligomers from NMR Chemical Shifts and Residual Dipolar Couplings
暂无分享,去创建一个
Oliver F. Lange | David Baker | Frank DiMaio | Gaetano T. Montelione | Ad Bax | Ingemar André | Nikolaos G. Sgourakis | Paolo Rossi | D. Baker | F. Dimaio | G. Montelione | I. André | A. Bax | O. Lange | N. Sgourakis | Nicholas C. Fitzkee | P. Rossi | F. DiMaio | D. Baker
[1] David Baker,et al. Accurate Automated Protein NMR Structure Determination Using Unassigned NOESY Data , 2009, Journal of the American Chemical Society.
[2] A M Gronenborn,et al. Interhelical angles in the solution structure of the oligomerization domain of p53: correction , 1995, Science.
[3] J H Prestegard,et al. Order matrix analysis of residual dipolar couplings using singular value decomposition. , 1999, Journal of magnetic resonance.
[4] Charles D Schwieters,et al. Docking of protein-protein complexes on the basis of highly ambiguous intermolecular distance restraints derived from 1H/15N chemical shift mapping and backbone 15N-1H residual dipolar couplings using conjoined rigid body/torsion angle dynamics. , 2003, Journal of the American Chemical Society.
[5] Dmitri I Svergun,et al. Structural characterization of protein-protein complexes by integrating computational docking with small-angle scattering data. , 2010, Journal of molecular biology.
[6] P. Bradley,et al. Toward High-Resolution de Novo Structure Prediction for Small Proteins , 2005, Science.
[7] A J Olson,et al. Structural symmetry and protein function. , 2000, Annual review of biophysics and biomolecular structure.
[8] A. Bax,et al. A simple apparatus for generating stretched polyacrylamide gels, yielding uniform alignment of proteins and detergent micelles* , 2001, Journal of biomolecular NMR.
[9] J H Prestegard,et al. Nuclear magnetic dipole interactions in field-oriented proteins: information for structure determination in solution. , 1995, Proceedings of the National Academy of Sciences of the United States of America.
[10] C. Arrowsmith,et al. Solution structure of the tetrameric minimum transforming domain of p53 , 1995, Nature Structural Biology.
[11] Ad Bax,et al. Validation of Protein Structure from Anisotropic Carbonyl Chemical Shifts in a Dilute Liquid Crystalline Phase , 1998 .
[12] David Eisenberg,et al. 3D domain swapping: As domains continue to swap , 2002, Protein science : a publication of the Protein Society.
[13] D. Baker,et al. Alternate states of proteins revealed by detailed energy landscape mapping. , 2011, Journal of molecular biology.
[14] Ad Bax,et al. Isotope-filtered 2D NMR of a protein-peptide complex: study of a skeletal muscle myosin light chain kinase fragment bound to calmodulin , 1992 .
[15] David Baker,et al. Prediction of the structure of symmetrical protein assemblies , 2007, Proceedings of the National Academy of Sciences.
[16] W. Sundquist,et al. Structure of the carboxyl-terminal dimerization domain of the HIV-1 capsid protein. , 1997, Science.
[17] A. Bax,et al. Evaluation of uncertainty in alignment tensors obtained from dipolar couplings , 2002, Journal of biomolecular NMR.
[18] G M Clore,et al. Accurate and rapid docking of protein-protein complexes on the basis of intermolecular nuclear overhauser enhancement data and dipolar couplings by rigid body minimization. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[19] Gabriel Cornilescu,et al. Letter to the Editor: Solution Structure of a Homodimeric Hypothetical Protein, At5g22580, a Structural Genomics Target from Arabidopsis Thaliana , 2003, Journal of biomolecular NMR.
[20] A. Bax,et al. TALOS+: a hybrid method for predicting protein backbone torsion angles from NMR chemical shifts , 2009, Journal of biomolecular NMR.
[21] A M Gronenborn,et al. A robust method for determining the magnitude of the fully asymmetric alignment tensor of oriented macromolecules in the absence of structural information. , 1998, Journal of magnetic resonance.
[22] Mei Jiang,et al. RDC‐assisted modeling of symmetric protein homo‐oligomers , 2008, Protein science : a publication of the Protein Society.
[23] G. Marius Clore,et al. Refined solution structure of the oligomerization domain of the tumour suppressor p53 , 1995, Nature Structural Biology.
[24] A. Bax,et al. The periplasmic domain of TolR from Haemophilus influenzae forms a dimer with a large hydrophobic groove: NMR solution structure and comparison to SAXS data. , 2008, Biochemistry.
[25] A. Engelman,et al. Crystal structure of the catalytic domain of HIV-1 integrase: similarity to other polynucleotidyl transferases. , 1994, Science.
[26] Jack Greenblatt,et al. Methods for Measurement of Intermolecular NOEs by Multinuclear NMR Spectroscopy: Application to a Bacteriophage λ N-Peptide/boxB RNA Complex , 1997 .
[27] 宁北芳,et al. 疟原虫var基因转换速率变化导致抗原变异[英]/Paul H, Robert P, Christodoulou Z, et al//Proc Natl Acad Sci U S A , 2005 .
[28] Thomas L. Madden,et al. Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements. , 2001, Nucleic acids research.
[29] G. Otting,et al. NMR experiments for the sign determination of homonuclear scalar and residual dipolar couplings , 2000, Journal of biomolecular NMR.
[30] G. Montelione,et al. Three‐dimensional structure of the weakly associated protein homodimer SeR13 using RDCs and paramagnetic surface mapping , 2010, Protein science : a publication of the Protein Society.
[31] Andreas Lingel,et al. Structure of IL-33 and its interaction with the ST2 and IL-1RAcP receptors--insight into heterotrimeric IL-1 signaling complexes. , 2009, Structure.
[32] P. Wolynes,et al. Symmetry and the energy landscapes of biomolecules. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[33] Robert H. Halstead,et al. Matrix Computations , 2011, Encyclopedia of Parallel Computing.
[34] R J Read,et al. Crystallography & NMR system: A new software suite for macromolecular structure determination. , 1998, Acta crystallographica. Section D, Biological crystallography.
[35] A. Bax,et al. Solution Conformation and Dynamics of the HIV-1 Integrase Core Domain* , 2010, The Journal of Biological Chemistry.
[36] C. Dominguez,et al. HADDOCK: a protein-protein docking approach based on biochemical or biophysical information. , 2003, Journal of the American Chemical Society.
[37] David Baker,et al. Emergence of symmetry in homooligomeric biological assemblies , 2008, Proceedings of the National Academy of Sciences.
[38] A. Gronenborn,et al. High-resolution structure of the oligomerization domain of p53 by multidimensional NMR. , 1994, Science.
[39] A. Bax,et al. Variable dimerization of the Ly49A natural killer cell receptor results in differential engagement of its MHC class I ligand. , 2006, Journal of molecular biology.
[40] Tatyana Polenova,et al. Solid-state NMR studies of HIV-1 capsid protein assemblies. , 2010, Journal of the American Chemical Society.
[41] D. Baker,et al. Simultaneous prediction of protein folding and docking at high resolution , 2009, Proceedings of the National Academy of Sciences.
[42] N. Tjandra,et al. Solution NMR characterizations of oligomerization and dynamics of equine infectious anemia virus matrix protein and its interaction with PIP2. , 2008, Biochemistry.
[43] Peijun Zhang,et al. Structural Convergence between Cryo-EM and NMR Reveals Intersubunit Interactions Critical for HIV-1 Capsid Function , 2009, Cell.
[44] Oliver F. Lange,et al. Consistent blind protein structure generation from NMR chemical shift data , 2008, Proceedings of the National Academy of Sciences.
[45] Jeffrey J. Gray,et al. Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations. , 2003, Journal of molecular biology.
[46] Michael Nilges,et al. An efficient protocol for NMR-spectroscopy-based structure determination of protein complexes in solution. , 2010, Angewandte Chemie.
[47] Jens Meiler,et al. ROSETTA3: an object-oriented software suite for the simulation and design of macromolecules. , 2011, Methods in enzymology.
[48] B. Hess,et al. Orientation restraints in molecular dynamics simulations using time and ensemble averaging. , 2003, Journal of magnetic resonance.
[49] N. Pavletich,et al. Crystal structure of the tetramerization domain of the p53 tumor suppressor at 1.7 angstroms , 1995, Science.
[50] A. Gronenborn,et al. Measurement of Residual Dipolar Couplings of Macromolecules Aligned in the Nematic Phase of a Colloidal Suspension of Rod-Shaped Viruses , 1998 .
[51] L. Mueller,et al. Tunable alignment of macromolecules by filamentous phage yields dipolar coupling interactions , 1998, Nature Structural Biology.
[52] D. Davies,et al. Three new structures of the core domain of HIV-1 integrase: an active site that binds magnesium. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[53] G. Clore,et al. Solution structure of the 128 kDa enzyme I dimer from Escherichia coli and its 146 kDa complex with HPr using residual dipolar couplings and small- and wide-angle X-ray scattering. , 2010, Journal of the American Chemical Society.
[54] D. Baker,et al. De novo protein structure generation from incomplete chemical shift assignments , 2009, Journal of biomolecular NMR.
[55] Ad Bax,et al. Facile measurement of 1H–15N residual dipolar couplings in larger perdeuterated proteins , 2010, Journal of biomolecular NMR.
[56] C Kooperberg,et al. Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions. , 1997, Journal of molecular biology.
[57] Ad Bax,et al. Magnetic Field Dependence of Nitrogen−Proton J Splittings in 15N-Enriched Human Ubiquitin Resulting from Relaxation Interference and Residual Dipolar Coupling , 1996 .
[58] A. Bax,et al. Direct measurement of distances and angles in biomolecules by NMR in a dilute liquid crystalline medium. , 1997, Science.
[59] Jesper Ferkinghoff-Borg,et al. Calculation of accurate small angle X-ray scattering curves from coarse-grained protein models , 2010, BMC Bioinformatics.
[60] Oliver F. Lange,et al. NMR Structure Determination for Larger Proteins Using Backbone-Only Data , 2010, Science.