Identification of Shiga toxin-producing (STEC) and enteropathogenic (EPEC) Escherichia coli in diarrhoeic calves and comparative genomics of O5 bovine and human STEC.

[1]  A. Mellmann,et al.  Is Shiga Toxin-Negative Escherichia coli O157:H7 Enteropathogenic or Enterohemorrhagic Escherichia coli? Comprehensive Molecular Analysis Using Whole-Genome Sequencing , 2015, Journal of Clinical Microbiology.

[2]  S. Iyoda,et al.  Escherichia coli O-Genotyping PCR: a Comprehensive and Practical Platform for Molecular O Serogrouping , 2015, Journal of Clinical Microbiology.

[3]  N. Tumer,et al.  Do the A Subunits Contribute to the Differences in the Toxicity of Shiga Toxin 1 and Shiga Toxin 2? , 2015, Toxins.

[4]  V. Sperandio,et al.  Enterohemorrhagic Escherichia coli and Other Shiga Toxin-Producing E. coli , 2015 .

[5]  J. Kaper,et al.  Overview and Historical Perspectives. , 2014, Microbiology spectrum.

[6]  A. Caprioli,et al.  Public Health Microbiology of Shiga Toxin-Producing Escherichia coli. , 2014, Microbiology spectrum.

[7]  Anil K. Persad,et al.  Animal Reservoirs of Shiga Toxin-Producing Escherichia coli. , 2014, Microbiology spectrum.

[8]  M. Stevens,et al.  The Locus of Enterocyte Effacement and Associated Virulence Factors of Enterohemorrhagic Escherichia coli , 2014, Microbiology spectrum.

[9]  P. Tarr,et al.  Shiga Toxin/Verocytotoxin-Producing Escherichia coli Infections: Practical Clinical Perspectives , 2014, Microbiology spectrum.

[10]  Y. Kirino,et al.  Identification of O serotypes, genotypes, and virulotypes of Shiga toxin-producing Escherichia coli isolates, including non-O157 from beef cattle in Japan. , 2014, Journal of food protection.

[11]  D. Rasko,et al.  EHEC Genomics: Past, Present, and Future. , 2014, Microbiology spectrum.

[12]  P. Gerner-Smidt,et al.  Draft Whole-Genome Sequences of Nine Non-O157 Shiga Toxin-Producing Escherichia coli Strains , 2014, Genome Announcements.

[13]  A. Torres,et al.  Enterohemorrhagic Escherichia coli Adhesins. , 2014, Microbiology spectrum.

[14]  L. Beutin,et al.  Detection of Shiga Toxin-Producing Escherichia coli from Nonhuman Sources and Strain Typing. , 2014, Microbiology spectrum.

[15]  Tetsuya Hayashi,et al.  Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads , 2014, Genome research.

[16]  Ole Lund,et al.  Real-Time Whole-Genome Sequencing for Routine Typing, Surveillance, and Outbreak Detection of Verotoxigenic Escherichia coli , 2014, Journal of Clinical Microbiology.

[17]  N. French,et al.  Distribution of Escherichia coli strains harbouring Shiga toxin-producing E. coli (STEC)-associated virulence factors (stx1, stx2, eae, ehxA) from very young calves in the North Island of New Zealand , 2014, Epidemiology and Infection.

[18]  A. Siitonen,et al.  Applicability of DiversiLab repetitive sequence-based PCR method in epidemiological typing of enterohemorrhagic Escherichia coli (EHEC). , 2013, Foodborne pathogens and disease.

[19]  Koichiro Tamura,et al.  Evolutionary Genetics Analysis Version 6 . 0 , 2013 .

[20]  D. Bolton,et al.  Serotypes and virulotypes of non-O157 shiga-toxin producing Escherichia coli (STEC) on bovine hides and carcasses. , 2012, Food microbiology.

[21]  H. De Greve,et al.  O157:H7 and O104:H4 Vero/Shiga toxin-producing Escherichia coli outbreaks: respective role of cattle and humans , 2012, Veterinary Research.

[22]  F. Scheutz,et al.  Incidence and Virulence Determinants of Verocytotoxin-Producing Escherichia coli Infections in the Brussels-Capital Region, Belgium, in 2008–2010 , 2012, Journal of Clinical Microbiology.

[23]  Ole Lund,et al.  Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria , 2012, Journal of Clinical Microbiology.

[24]  U. Dobrindt,et al.  What defines extraintestinal pathogenic Escherichia coli? , 2011, International journal of medical microbiology : IJMM.

[25]  T. Itoh,et al.  Typing of O26 enterohaemorrhagic and enteropathogenic Escherichia coli isolated from humans and cattle with IS621 multiplex PCR‐based fingerprinting , 2011, Journal of applied microbiology.

[26]  L. Beutin,et al.  Identification of Genetic Markers for Differentiation of Shiga Toxin-Producing, Enteropathogenic, and Avirulent Strains of Escherichia coli O26 , 2011, Applied and Environmental Microbiology.

[27]  Tetsuya Hayashi,et al.  IS621-based multiplex PCR printing method of O26 enterohaemorrhagic and enteropathogenic Escherichia coli isolated from humans and cattle , 2011 .

[28]  L. Beutin,et al.  Micro-array for the identification of Shiga toxin-producing Escherichia coli (STEC) seropathotypes associated with Hemorrhagic Colitis and Hemolytic Uremic Syndrome in humans. , 2010, International journal of food microbiology.

[29]  D. Ussery,et al.  Comparison of 61 Sequenced Escherichia coli Genomes , 2010, Microbial Ecology.

[30]  David R Smith,et al.  Attaching-effacing Escherichia coli Infections in Cattle , 2010, Veterinary Clinics of North America: Food Animal Practice.

[31]  Masahira Hattori,et al.  Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli , 2009, Proceedings of the National Academy of Sciences.

[32]  Tetsuya Hayashi,et al.  Development of a Multiplex PCR-Based Rapid Typing Method for Enterohemorrhagic Escherichia coli O157 Strains , 2009, Journal of Clinical Microbiology.

[33]  Rick L. Stevens,et al.  The RAST Server: Rapid Annotations using Subsystems Technology , 2008, BMC Genomics.

[34]  Tetsuya Hayashi,et al.  Complexity of the genomic diversity in enterohemorrhagic Escherichia coli O157 revealed by the combinational use of the O157 Sakai OligoDNA microarray and the Whole Genome PCR scanning. , 2006, DNA research : an international journal for rapid publication of reports on genes and genomes.

[35]  G. Daube,et al.  Verotoxigenic Escherichia coli from animals, humans and foods: who's who? , 2005, Journal of applied microbiology.

[36]  T. A. Hall,et al.  BIOEDIT: A USER-FRIENDLY BIOLOGICAL SEQUENCE ALIGNMENT EDITOR AND ANALYSIS PROGRAM FOR WINDOWS 95/98/ NT , 1999 .

[37]  J. Mainil,et al.  Association between the effacing (eae) gene and the Shiga-like toxin-encoding genes in Escherichia coli isolates from cattle. , 1993, American journal of veterinary research.

[38]  A. Pugsley.  Shiga toxin. , 1986, Microbiological sciences.