Detailed droplet routing and complexity characterization on a digital microfluidic biochip

Digital microfluidic systems (DMFS) are poised to provide fully automated, high-throughput, dynamically reconfigurable sensing devices superior to those available today. Efficient droplet routing algorithms for these systems have not yet been established, though several solutions have been proposed. Such algorithms are ultimately required to generate droplet movement schedules and must be robust enough to handle the inevitable increases in problem complexity that will come as this technology matures. We have proposed a new solution based on a classic VLSI lineprobe algorithm to meet these demands for the detailed routing of droplets within a multi-stage algorithm. The most significant addition includes a sub-algorithm that calculates the routing complexity for any DMFS configuration based on the size, shape, number, type, and distribution of rectilinear obstacles throughout a DMFS biochip surface. By determining the complexity of the routing of each droplet, routing schedules may be prioritized, minimizing the number of fluidic and time constraint violations that affect high priority droplet routes. The complexity characterizations generated by our algorithm may also be used to create consistent, standardized benchmarks for the evaluation of existing droplet routing solutions. The efficiency of the proposed algorithm has been verified using the simulation presented in this paper.

[1]  Tao Xu,et al.  Digital microfluidic biochip design for protein crystallization , 2007, 2007 IEEE/NIH Life Science Systems and Applications Workshop.

[2]  Yao-Wen Chang,et al.  A progressive-ILP based routing algorithm for cross-referencing biochips , 2008, 2008 45th ACM/IEEE Design Automation Conference.

[3]  Krishnendu Chakrabarty,et al.  Integrated Droplet Routing in the Synthesis of Microfluidic Biochips , 2007, 2007 44th ACM/IEEE Design Automation Conference.

[4]  Karl-Friedrich Böhringer,et al.  Modeling and Controlling Parallel Tasks in Droplet-Based Microfluidic Systems , 2006, IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems.

[5]  S. Cho,et al.  Creating, transporting, cutting, and merging liquid droplets by electrowetting-based actuation for digital microfluidic circuits , 2003 .

[6]  R. Fair,et al.  An integrated digital microfluidic lab-on-a-chip for clinical diagnostics on human physiological fluids. , 2004, Lab on a chip.

[7]  R. Fair,et al.  CLINICAL DIAGNOSTICS ON HUMAN WHOLE BLOOD, PLASMA, SERUM, URINE, SALIVA, SWEAT, AND TEARS ON A DIGITAL MICROFLUIDIC PLATFORM , 2003 .

[8]  Krishnendu Chakrabarty,et al.  Automated design of digital microfluidic lab-on-chip under pin-count constraints , 2008, ISPD '08.

[9]  Stanley L. Hurst,et al.  VLSI Custom Microelectronics: Digital: Analog, and Mixed-Signal , 1998 .

[10]  Yao-Wen Chang,et al.  BioRoute: a network-flow based routing algorithm for digital microfluidic biochips , 2007, 2007 IEEE/ACM International Conference on Computer-Aided Design.

[11]  Dave Hightower A solution to line-routing problems on the continuous plane , 1969, DAC '69.

[12]  R. Fair,et al.  Electrowetting-based actuation of liquid droplets for microfluidic applications , 2000 .

[13]  Roberto Guerrieri,et al.  Lab on a Chip for Live-Cell Manipulation , 2007, IEEE Design & Test of Computers.

[14]  N. F. de Rooij,et al.  Microfluidics meets MEMS , 2003, Proc. IEEE.

[15]  Da-Jeng Yao,et al.  DNA ligation of ultramicro volume using an EWOD microfluidic system with coplanar electrodes , 2008 .

[16]  Jack Zhou,et al.  Chemical and Biological Applications of Digital-Microfluidic Devices , 2007, IEEE Design & Test of Computers.

[17]  Fei Su,et al.  Design of fault-tolerant and dynamically-reconfigurable microfluidic biochips , 2005, Design, Automation and Test in Europe.

[18]  F. Dietrich,et al.  INVESTIGATION OF ELECTROWETTING-BASED MICROFLUIDICS FOR REAL-TIME PCR API’LICATIONS , 2003 .

[19]  David Z. Pan,et al.  A high-performance droplet router for digital microfluidic biochips , 2008, ISPD '08.

[20]  Y. Fouillet,et al.  Digital microfluidic design and optimization of classic and new fluidic functions for lab on a chip systems , 2008 .

[21]  R. Fair,et al.  A digital microfluidic biosensor for multianalyte detection , 2003, The Sixteenth Annual International Conference on Micro Electro Mechanical Systems, 2003. MEMS-03 Kyoto. IEEE.

[22]  Fei Su,et al.  Architectural-level synthesis of digital microfluidics-based biochips , 2004, ICCAD 2004.

[23]  R. Fair,et al.  Electrowetting-based on-chip sample processing for integrated microfluidics , 2003, IEEE International Electron Devices Meeting 2003.

[24]  Mark K. Goldberg,et al.  Performance Characterization of a Reconfigurable Planar-Array Digital Microfluidic System , 2006, IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems.

[25]  Jin-Woo Choi,et al.  Disposable smart lab on a chip for point-of-care clinical diagnostics , 2004, Proceedings of the IEEE.

[26]  Fei Su,et al.  Digital Microfluidic Biochips - Synthesis, Testing, and Reconfiguration Techniques , 2006 .

[27]  Bernhard H Weigl,et al.  Microfluidic technologies in clinical diagnostics. , 2002, Clinica chimica acta; international journal of clinical chemistry.