Hypoxia enhances lignification and affects the anatomical structure in hydroponic cultivation of carrot taproot

[1]  A. Xiong,et al.  The genome sequence of ‘Kurodagosun’, a major carrot variety in Japan and China, reveals insights into biological research and carrot breeding , 2018, Molecular Genetics and Genomics.

[2]  A. Xiong,et al.  Transcriptome-based identification of genes revealed differential expression profiles and lignin accumulation during root development in cultivated and wild carrots , 2016, Plant Cell Reports.

[3]  Walter Sanseverino,et al.  A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution , 2016, Nature Genetics.

[4]  Stephen Depuydt,et al.  The sensitivity of an hydroponic lettuce root elongation bioassay to metals, phenol and wastewaters. , 2016, Ecotoxicology and environmental safety.

[5]  A. Xiong,et al.  Morphological characteristics, anatomical structure, and gene expression: novel insights into gibberellin biosynthesis and perception during carrot growth and development , 2015, Horticulture Research.

[6]  Robert D. Finn,et al.  HMMER web server: 2015 update , 2015, Nucleic Acids Res..

[7]  A. Xiong,et al.  Selection of Suitable Reference Genes for qPCR Normalization under Abiotic Stresses and Hormone Stimuli in Carrot Leaves , 2015, PloS one.

[8]  Fei Xiong,et al.  De novo assembly, transcriptome characterization, lignin accumulation, and anatomic characteristics: novel insights into lignin biosynthesis during celery leaf development , 2015, Scientific Reports.

[9]  Bo Hu,et al.  GSDS 2.0: an upgraded gene feature visualization server , 2014, Bioinform..

[10]  A. Xiong,et al.  Transcript profiling of structural genes involved in cyanidin-based anthocyanin biosynthesis between purple and non-purple carrot (Daucus carota L.) cultivars reveals distinct patterns , 2014, BMC Plant Biology.

[11]  Feng Wang,et al.  CarrotDB: a genomic and transcriptomic database for carrot , 2014, Database J. Biol. Databases Curation.

[12]  S. Roy,et al.  Evaluating contribution of ionic, osmotic and oxidative stress components towards salinity tolerance in barley , 2014, BMC Plant Biology.

[13]  M. Herrero,et al.  Glycoprotein composition along the pistil of Malus x domestica and the modulation of pollen tube growth , 2014, BMC Plant Biology.

[14]  Koichiro Tamura,et al.  MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. , 2013, Molecular biology and evolution.

[15]  E. Birney,et al.  Pfam: the protein families database , 2013, Nucleic Acids Res..

[16]  E. Koonin,et al.  Functional and evolutionary implications of gene orthology , 2013, Nature Reviews Genetics.

[17]  L. Donaldson,et al.  Localization of Cell Wall Polysaccharides in Normal and Compression Wood of Radiata Pine: Relationships with Lignification and Microfibril Orientation1 , 2011, Plant Physiology.

[18]  Sean R. Eddy,et al.  Accelerated Profile HMM Searches , 2011, PLoS Comput. Biol..

[19]  Massimo Iorizzo,et al.  Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae , 2011, BMC Genomics.

[20]  F. Ma,et al.  Comparative Analysis of Endogenous Hormones in Leaves and Roots of Two Contrasting Malus Species in Response to Hypoxia Stress , 2011, Journal of Plant Growth Regulation.

[21]  Joost T. van Dongen,et al.  Comparative analysis between plant species of transcriptional and metabolic responses to hypoxia. , 2011, The New phytologist.

[22]  R. Dixon,et al.  Transcriptional networks for lignin biosynthesis: more complex than we thought? , 2011, Trends in plant science.

[23]  C. Chapple,et al.  The genetics of lignin biosynthesis: connecting genotype to phenotype. , 2010, Annual review of genetics.

[24]  D. Llewellyn,et al.  Comparisons of early transcriptome responses to low-oxygen environments in three dicotyledonous plant species , 2010 .

[25]  Jing-Ke Weng,et al.  The origin and evolution of lignin biosynthesis. , 2010, The New phytologist.

[26]  John Ralph,et al.  Lignin Biosynthesis and Structure1 , 2010, Plant Physiology.

[27]  P. Mazzafera,et al.  Abiotic and biotic stresses and changes in the lignin content and composition in plants. , 2010, Journal of integrative plant biology.

[28]  Xirong Xiao,et al.  Developmental Control of Lignification in Stems of Lowland Switchgrass Variety Alamo and the Effects on Saccharification Efficiency , 2009, BioEnergy Research.

[29]  L. Romero,et al.  Involvement of lignification and membrane permeability in the tomato root response to boron toxicity. , 2009, Plant science : an international journal of experimental plant biology.

[30]  A. Yamauchi,et al.  Root growth, aerenchyma development, and oxygen transport in rice genotypes subjected to drought and waterlogging , 2008 .

[31]  Thomas D. Schmittgen,et al.  Analyzing real-time PCR data by the comparative CT method , 2008, Nature Protocols.

[32]  Sophie Alvarez,et al.  Metabolomic and proteomic changes in the xylem sap of maize under drought. , 2008, Plant, cell & environment.

[33]  Michael D. Casler,et al.  Maize Stem Tissues: Impact of Development on Cell Wall Degradability , 2006 .

[34]  Kun-song Chen,et al.  Accumulation of lignin in relation to change in activities of lignification enzymes in loquat fruit flesh after harvest , 2006 .

[35]  Michael A. Costa,et al.  Characterization in vitro and in vivo of the putative multigene 4-coumarate:CoA ligase network in Arabidopsis: syringyl lignin and sinapate/sinapyl alcohol derivative formation. , 2005, Phytochemistry.

[36]  J. Bailey-Serres,et al.  Plant responses to hypoxia--is survival a balancing act? , 2004, Trends in plant science.

[37]  E. Dennis,et al.  Enhanced Low Oxygen Survival in Arabidopsis through Increased Metabolic Flux in the Fermentative Pathway1 , 2003, Plant Physiology.

[38]  Cris Kuhlemeier,et al.  The Pyruvate decarboxylase1 Gene of Arabidopsis Is Required during Anoxia But Not Other Environmental Stresses[w] , 2003, Plant Physiology.

[39]  P. Geigenberger,et al.  Response of plant metabolism to too little oxygen. , 2003, Current opinion in plant biology.

[40]  D. Rodriguez-Amaya,et al.  Carotenoid composition of hydroponic leafy vegetables. , 2003, Journal of agricultural and food chemistry.

[41]  A. Mustroph,et al.  Localization of sucrose synthase in wheat roots: increased in situ activity of sucrose synthase correlates with cell wall thickening by cellulose deposition under hypoxia , 2003, Planta.

[42]  P. Springer,et al.  Gene and enhancer trap transposable elements reveal oxygen deprivation-regulated genes and their complex patterns of expression in Arabidopsis. , 2003, Annals of botany.

[43]  Chung-Jui Tsai,et al.  Differential Expression of Two Distinct Phenylalanine Ammonia-Lyase Genes in Condensed Tannin-Accumulating and Lignifying Cells of Quaking Aspen , 2002, Plant Physiology.

[44]  Liangjiang Wang,et al.  The phenylpropanoid pathway and plant defence-a genomics perspective. , 2002, Molecular plant pathology.

[45]  S. Salvi,et al.  Identification of QTLs for root characteristics in maize grown in hydroponics and analysis of their overlap with QTLs for grain yield in the field at two water regimes , 2002, Plant Molecular Biology.

[46]  H. Peng,et al.  Signaling events in the hypoxic induction of alcohol dehydrogenase gene in Arabidopsis. , 2001, Plant physiology.

[47]  S. Lalitha.  Primer Premier 5 , 2000 .

[48]  M. Drew,et al.  Programmed cell death and aerenchyma formation in roots. , 2000, Trends in plant science.

[49]  Chung-Jui Tsai,et al.  Repression of lignin biosynthesis promotes cellulose accumulation and growth in transgenic trees , 1999, Nature Biotechnology.

[50]  Michael F. Thomashow,et al.  PLANT COLD ACCLIMATION: Freezing Tolerance Genes and Regulatory Mechanisms. , 1999, Annual review of plant physiology and plant molecular biology.

[51]  R. Barrero,et al.  Cellular dissection of the degradation pattern of cortical cell death during aerenchyma formation of rice roots , 1998, Planta.

[52]  P. Schopfer,et al.  Structure and distribution of lignin in primary and secondary cell walls of maize coleoptiles analyzed by chemical and immunological probes , 1997, Planta.

[53]  D. Longstreth,et al.  Aerenchyma develops by cell lysis in roots and cell separation in leaf petioles in Sagittaria lancifolia (Alismataceae) , 1996 .

[54]  R. E. Sharp,et al.  A microsensor for direct measurement of O2 partial pressure within plant tissues3 , 1996 .

[55]  K. Davis,et al.  The Arabidopsis thaliana 4-coumarate:CoA ligase (4CL) gene: stress and developmentally regulated expression and nucleotide sequence of its cDNA , 1995, Plant Molecular Biology.

[56]  M. Drew,et al.  Induction of Enzymes Associated with Lysigenous Aerenchyma Formation in Roots of Zea mays during Hypoxia or Nitrogen Starvation , 1994, Plant physiology.

[57]  Y. Matsui,et al.  Extraction and identification of phytotoxic substances accumulated in nutrient solution for the hydroponic culture of tomato , 1993 .

[58]  Park S. Nobel,et al.  Physicochemical and Environmental Plant Physiology , 1991 .

[59]  M. Drew,et al.  Decreased Ethylene Biosynthesis, and Induction of Aerenchyma, by Nitrogen- or Phosphate-Starvation in Adventitious Roots of Zea mays L. , 1989, Plant physiology.

[60]  E. Meyerowitz,et al.  Molecular cloning and DNA sequence of the Arabidopsis thaliana alcohol dehydrogenase gene. , 1986, Proceedings of the National Academy of Sciences of the United States of America.

[61]  D. Llewellyn,et al.  Global gene expression responses to waterlogging in roots and leaves of cotton (Gossypium hirsutum L.). , 2010, Plant & cell physiology.

[62]  W. Boerjan,et al.  Lignin biosynthesis. , 2003, Annual review of plant biology.

[63]  A. Boudet.  Lignins and lignification: Selected issues , 2000 .

[64]  L. C. Purcell,et al.  Soybean Root Morphological and Anatomical Traits Associated with Acclimation to Flooding , 1999 .

[65]  L. Björn,et al.  UV-B as an environmental factor in plant life: stress and regulation. , 1997, Trends in ecology & evolution.