Enhancement of Survival and Electricity Production in an Engineered Bacterium by Light-Driven Proton Pumping

ABSTRACT Microorganisms can use complex photosystems or light-dependent proton pumps to generate membrane potential and/or reduce electron carriers to support growth. The discovery that proteorhodopsin is a light-dependent proton pump that can be expressed readily in recombinant bacteria enables development of new strategies to probe microbial physiology and to engineer microbes with new light-driven properties. Here, we describe functional expression of proteorhodopsin and light-induced changes in membrane potential in the bacterium Shewanella oneidensis strain MR-1. We report that there were significant increases in electrical current generation during illumination of electrochemical chambers containing S. oneidensis expressing proteorhodopsin. We present evidence that an engineered strain is able to consume lactate at an increased rate when it is illuminated, which is consistent with the hypothesis that proteorhodopsin activity enhances lactate uptake by increasing the proton motive force. Our results demonstrate that there is coupling of a light-driven process to electricity generation in a nonphotosynthetic engineered bacterium. Expression of proteorhodopsin also preserved the viability of the bacterium under nutrient-limited conditions, providing evidence that fulfillment of basic energy needs of organisms may explain the widespread distribution of proteorhodopsin in marine environments.

[1]  H. Shapiro,et al.  Accurate flow cytometric membrane potential measurement in bacteria using diethyloxacarbocyanine and a ratiometric technique. , 1999, Cytometry.

[2]  J. Lloyd,et al.  Secretion of Flavins by Shewanella Species and Their Role in Extracellular Electron Transfer , 2007, Applied and Environmental Microbiology.

[3]  D. R. Bond,et al.  Electricity Production by Geobacter sulfurreducens Attached to Electrodes , 2003, Applied and Environmental Microbiology.

[4]  D. Oesterhelt,et al.  Light‐induced changes of the pH gradient and the membrane potential in H. halobium , 1976, FEBS letters.

[5]  Dan Coursolle,et al.  Mechanism and Consequences of Anaerobic Respiration of Cobalt by Shewanella oneidensis Strain MR-1 , 2008, Applied and Environmental Microbiology.

[6]  S. Giovannoni,et al.  Proteorhodopsin in the ubiquitous marine bacterium SAR11 , 2005, Nature.

[7]  R. Neutze,et al.  Light stimulates growth of proteorhodopsin-containing marine Flavobacteria , 2007, Nature.

[8]  Jed A. Fuhrman,et al.  Proteorhodopsins: an array of physiological roles? , 2008, Nature Reviews Microbiology.

[9]  Y. Zuo,et al.  Electricity generation by Rhodopseudomonas palustris DX-1. , 2008, Environmental science & technology.

[10]  D. R. Bond,et al.  Shewanella secretes flavins that mediate extracellular electron transfer , 2008, Proceedings of the National Academy of Sciences.

[11]  A. Kepes,et al.  Respiratory control in Escherichia coli K 12. , 1979, European journal of biochemistry.

[12]  R. E. MacDonald,et al.  Light-induced glutamate transport in Halobacterium halobium envelope vesicles. II. Evidence that the driving force is a light-dependent sodium gradient. , 1976, Biochemistry.

[13]  P. Mitchell,et al.  Estimation of membrane potential and pH difference across the cristae membrane of rat liver mitochondria. , 2005, European journal of biochemistry.

[14]  A. Spormann,et al.  Hydrogen Metabolism in Shewanella oneidensis MR-1 , 2006, Applied and Environmental Microbiology.

[15]  Kenneth H. Nealson,et al.  Ecophysiology of the Genus Shewanella , 2006 .

[16]  E. Delong,et al.  Proteorhodopsin photosystem gene expression enables photophosphorylation in a heterologous host , 2007, Proceedings of the National Academy of Sciences.

[17]  E. Bamberg,et al.  Functional expression of bacteriorhodopsin in oocytes allows direct measurement of voltage dependence of light induced H+ pumping , 1995, FEBS letters.

[18]  J. Aguilar,et al.  Transport of L-Lactate, D-Lactate, and glycolate by the LldP and GlcA membrane carriers of Escherichia coli. , 2002, Biochemical and biophysical research communications.

[19]  Claudia Schmidt-Dannert,et al.  Light-energy conversion in engineered microorganisms. , 2008, Trends in biotechnology.

[20]  J. Lanyi,et al.  Light-induced glutamate transport in Halobacterium halobium envelope vesicles. I. Kinetics of the light-dependent and the sodium-gradient-dependent uptake. , 1976, Biochemistry.

[21]  G. Unden,et al.  Changes in the proton potential and the cellular energetics of Escherichia coli during growth by aerobic and anaerobic respiration or by fermentation. , 1998, European journal of biochemistry.

[22]  W. Stoeckenius,et al.  Reconstitution of purple membrane vesicles catalyzing light-driven proton uptake and adenosine triphosphate formation. , 1974, The Journal of biological chemistry.

[23]  A. Halpern,et al.  The Sorcerer II Global Ocean Sampling Expedition: Metagenomic Characterization of Viruses within Aquatic Microbial Samples , 2008, PloS one.

[24]  R. E. MacDonald,et al.  Light-induced leucine transport in Halobacterium halobium envelope vesicles: a chemiosmotic system. , 1975, Biochemistry.

[25]  Julian N. Rosenberg,et al.  A green light for engineered algae: redirecting metabolism to fuel a biotechnology revolution. , 2008, Current opinion in biotechnology.

[26]  A. Halpern,et al.  The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific , 2007, PLoS biology.

[27]  M. Tien,et al.  Characterization of Protein-Protein Interactions Involved in Iron Reduction by Shewanella oneidensis MR-1 , 2007, Applied and Environmental Microbiology.

[28]  T. Kikukawa,et al.  A light-driven proton pump from Haloterrigena turkmenica: functional expression in Escherichia coli membrane and coupling with a H+ co-transporter. , 2006, Biochemical and biophysical research communications.

[29]  F. Harold The Vital Force: A Study of Bioenergetics , 1986 .

[30]  R. V. van Spanning,et al.  The organisation of proton motive and non-proton motive redox loops in prokaryotic respiratory systems. , 2008, Biochimica et biophysica acta.

[31]  D. Roop,et al.  Four new derivatives of the broad-host-range cloning vector pBBR1MCS, carrying different antibiotic-resistance cassettes. , 1995, Gene.

[32]  D. Oesterhelt,et al.  Rhodopsin-like protein from the purple membrane of Halobacterium halobium. , 1971, Nature: New biology.

[33]  Frances H. Arnold,et al.  Molecular breeding of carotenoid biosynthetic pathways , 2000, Nature Biotechnology.

[34]  J. Fredrickson,et al.  Respiration of metal (hydr)oxides by Shewanella and Geobacter: a key role for multihaem c-type cytochromes , 2007, Molecular microbiology.

[35]  Carlos Bustamante,et al.  Light-powering Escherichia coli with proteorhodopsin , 2007, Proceedings of the National Academy of Sciences.

[36]  Marion Leclerc,et al.  Proteorhodopsin phototrophy in the ocean , 2001, Nature.

[37]  D. Newman,et al.  Extracellular respiration , 2007, Molecular microbiology.

[38]  D. Oesterhelt,et al.  Bacteriorhodopsin-mediated photophosphorylation in Halobacterium halobium. , 1977, European journal of biochemistry.

[39]  D. Lovley The microbe electric: conversion of organic matter to electricity. , 2008, Current opinion in biotechnology.

[40]  R. Hozalski,et al.  Microbial Biofilm Voltammetry: Direct Electrochemical Characterization of Catalytic Electrode-Attached Biofilms , 2008, Applied and Environmental Microbiology.

[41]  A. Beliaev,et al.  MtrC, an outer membrane decahaem c cytochrome required for metal reduction in Shewanella putrefaciens MR‐1 , 2001, Molecular microbiology.

[42]  K. Palczewski,et al.  Crystal Structure of Rhodopsin: A G‐Protein‐Coupled Receptor , 2002, Chembiochem : a European journal of chemical biology.

[43]  T. Tsuchiya,et al.  Respiratory control in Escherichia coli , 1980, FEBS letters.

[44]  Paul C Mills,et al.  Characterization of an electron conduit between bacteria and the extracellular environment , 2009, Proceedings of the National Academy of Sciences.

[45]  E. Koonin,et al.  Bacterial rhodopsin: evidence for a new type of phototrophy in the sea. , 2000, Science.