The HIV-1 Integrase C-Terminal Domain Induces TAR RNA Structural Changes Promoting Tat Binding
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A. Miele | M. Negroni | M. Ruff | J. Batisse | Francesca Fiorini | P. Gouet | L. Ballut | C. Guillon | D. Lener | C. Rocchi | Camille Louvat
[1] V. Parissi,et al. The C-Terminal Domain of HIV-1 Integrase: A Swiss Army Knife for the Virus? , 2022, Viruses.
[2] Abhishek Kumar,et al. Emergence of Compensatory Mutations Reveals the Importance of Electrostatic Interactions between HIV-1 Integrase and Genomic RNA , 2021, bioRxiv.
[3] A. Engelman,et al. HIV-1 integrase binding to genomic RNA 5′-UTR induces local structural changes in vitro and in virio , 2021, Retrovirology.
[4] A. Engelman,et al. Structure and function of retroviral integrase , 2021, Nature Reviews Microbiology.
[5] S. Almo,et al. INI1/SMARCB1 Rpt1 domain mimics TAR RNA in binding to integrase to facilitate HIV-1 replication , 2021, Nature Communications.
[6] S. Goff,et al. Mutations altering acetylated residues in the CTD of HIV-1 integrase cause defects in proviral transcription at early times after integration of viral DNA , 2020, PLoS pathogens.
[7] Sebla B. Kutluay,et al. Going beyond Integration: The Emerging Role of HIV-1 Integrase in Virion Morphogenesis , 2020, Viruses.
[8] M. Negroni,et al. NKNK: a New Essential Motif in the C-Terminal Domain of HIV-1 Group M Integrases , 2020, Journal of Virology.
[9] N. Barkai,et al. Intrinsically Disordered Regions Direct Transcription Factor In Vivo Binding Specificity. , 2020, Molecular cell.
[10] L. Randau,et al. Bio-Layer Interferometry Analysis of the Target Binding Activity of CRISPR-Cas Effector Complexes , 2020, Frontiers in Molecular Biosciences.
[11] A. Engelman,et al. Integrase-RNA interactions underscore the critical role of integrase in HIV-1 virion morphogenesis , 2019, bioRxiv.
[12] B. Kieffer,et al. Human H4 tail stimulates HIV-1 integration through binding to the carboxy-terminal domain of integrase , 2019, Nucleic acids research.
[13] J. Hurley,et al. Structural mechanism for HIV-1 TAR loop recognition by Tat and the super elongation complex , 2018, Proceedings of the National Academy of Sciences.
[14] Janet L. Smith,et al. HIV-1 Tat interactions with cellular 7SK and viral TAR RNAs identifies dual structural mimicry , 2018, Nature Communications.
[15] Alfredo Castello,et al. Unconventional RNA‐binding proteins step into the virus–host battlefront , 2018, Wiley interdisciplinary reviews. RNA.
[16] W. McKinstry,et al. The C-terminal p6 domain of the HIV-1 Pr55Gag precursor is required for specific binding to the genomic RNA , 2018, RNA biology.
[17] Matthias W. Hentze,et al. A brave new world of RNA-binding proteins , 2018, Nature Reviews Molecular Cell Biology.
[18] S. Valente,et al. Role of Host Factors on the Regulation of Tat-Mediated HIV-1 Transcription. , 2017, Current pharmaceutical design.
[19] M. Kvaratskhelia,et al. Allosteric HIV-1 Integrase Inhibitors Lead to Premature Degradation of the Viral RNA Genome and Integrase in Target Cells , 2017, Journal of Virology.
[20] R. Ghirlando,et al. Cryo-EM structures and atomic model of the HIV-1 strand transfer complex intasome , 2017, Science.
[21] A. Rein,et al. On the Selective Packaging of Genomic RNA by HIV-1 , 2016, Viruses.
[22] P. Bieniasz,et al. HIV-1 Integrase Binds the Viral RNA Genome and Is Essential during Virion Morphogenesis , 2016, Cell.
[23] Ranjit Prasad Bahadur,et al. A structural perspective of RNA recognition by intrinsically disordered proteins , 2016, Cellular and Molecular Life Sciences.
[24] Alfredo Castello,et al. The expanding universe of ribonucleoproteins: of novel RNA-binding proteins and unconventional interactions , 2016, Pflügers Archiv - European Journal of Physiology.
[25] F. Stricher,et al. Production of unstable proteins through the formation of stable core complexes , 2016, Nature Communications.
[26] A. Engelman,et al. Distribution and Redistribution of HIV-1 Nucleocapsid Protein in Immature, Mature, and Integrase-Inhibited Virions: a Role for Integrase in Maturation , 2015, Journal of Virology.
[27] John T. Lis,et al. Getting up to speed with transcription elongation by RNA polymerase II , 2015, Nature Reviews Molecular Cell Biology.
[28] Xavier Robert,et al. Deciphering key features in protein structures with the new ENDscript server , 2014, Nucleic Acids Res..
[29] H. Le Hir,et al. Tight intramolecular regulation of the human Upf1 helicase by its N- and C-terminal domains , 2012, Nucleic acids research.
[30] Z. Debyser,et al. Identification of Residues in the C-terminal Domain of HIV-1 Integrase That Mediate Binding to the Transportin-SR2 Protein* , 2012, The Journal of Biological Chemistry.
[31] R. Craigie. The molecular biology of HIV integrase. , 2012, Future virology.
[32] Norman E. Davey,et al. Insights into RNA Biology from an Atlas of Mammalian mRNA-Binding Proteins , 2012, Cell.
[33] Peter F. Stadler,et al. ViennaRNA Package 2.0 , 2011, Algorithms for Molecular Biology.
[34] A. Engelman,et al. Impairment of Human Immunodeficiency Virus Type-1 Integrase SUMOylation Correlates with an Early Replication Defect* , 2011, The Journal of Biological Chemistry.
[35] M. Muesing,et al. Sequential Deletion of the Integrase (Gag-Pol) Carboxyl Terminus Reveals Distinct Phenotypic Classes of Defective HIV-1 , 2011, Journal of Virology.
[36] A. Burlingame,et al. HIV-1 Tat and host AFF4 recruit two transcription elongation factors into a bifunctional complex for coordinated activation of HIV-1 transcription. , 2010, Molecular cell.
[37] Yves Levy,et al. HIV-1 Tat assembles a multifunctional transcription elongation complex and stably associates with the 7SK snRNP. , 2010, Molecular cell.
[38] Patrice Gouet,et al. UV and X‐ray structural studies of a 101‐residue long Tat protein from a HIV‐1 primary isolate and of its mutated, detoxified, vaccine candidate , 2010, Proteins.
[39] M. Giacca,et al. Concerted action of cellular JNK and Pin1 restricts HIV-1 genome integration to activated CD4+ T lymphocytes , 2010, Nature Medicine.
[40] A. Engelman,et al. Biochemical and virological analysis of the 18-residue C-terminal tail of HIV-1 integrase , 2009, Retrovirology.
[41] Ronny Lorenz,et al. The Vienna RNA Websuite , 2008, Nucleic Acids Res..
[42] B. Verrier,et al. Design and characterization of an HIV-1 Tat mutant: inactivation of viral and cellular functions but not antigenicity. , 2007, Vaccine.
[43] B. Verrier,et al. Evidence for CTL-mediated selection of Tat and Rev mutants after the onset of the asymptomatic period during HIV type 1 infection. , 2006, AIDS research and human retroviruses.
[44] M. Giacca,et al. Acetylation of HIV‐1 integrase by p300 regulates viral integration , 2005, The EMBO journal.
[45] A. Engelman,et al. Genetic Analyses of Conserved Residues in the Carboxyl-Terminal Domain of Human Immunodeficiency Virus Type 1 Integrase , 2005, Journal of Virology.
[46] L. Cassiday,et al. Having it both ways: transcription factors that bind DNA and RNA. , 2002, Nucleic acids research.
[47] R. Plasterk,et al. Refined solution structure of the c‐terminal DNA‐binding domain of human immunovirus‐1 integrase , 1999, Proteins.
[48] Ping Wei,et al. A Novel CDK9-Associated C-Type Cyclin Interacts Directly with HIV-1 Tat and Mediates Its High-Affinity, Loop-Specific Binding to TAR RNA , 1998, Cell.
[49] A. Gronenborn,et al. Solution structure of the N-terminal zinc binding domain of HIV-1 integrase , 1997, Nature Structural Biology.
[50] M S Lewis,et al. Zn2+ promotes the self-association of human immunodeficiency virus type-1 integrase in vitro. , 1997, Biochemistry.
[51] R. Craigie,et al. Zinc folds the N-terminal domain of HIV-1 integrase, promotes multimerization, and enhances catalytic activity. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[52] A. Engelman,et al. A Soluble Active Mutant of HIV-1 Integrase , 1996, The Journal of Biological Chemistry.
[53] Rolf Boelens,et al. The DNA-binding domain of HIV-1 integrase has an SH3-like fold , 1995, Nature Structural Biology.
[54] A M Gronenborn,et al. Solution structure of the DNA binding domain of HIV-1 integrase. , 1995, Biochemistry.
[55] A. Engelman,et al. Crystal structure of the catalytic domain of HIV-1 integrase: similarity to other polynucleotidyl transferases. , 1994, Science.
[56] R. Plasterk,et al. Characterization of the minimal DNA-binding domain of the HIV integrase protein. , 1994, Nucleic acids research.
[57] A. Engelman,et al. The core and carboxyl-terminal domains of the integrase protein of human immunodeficiency virus type 1 each contribute to nonspecific DNA binding , 1994, Journal of virology.
[58] A. Woerner,et al. Characterization of a DNA binding domain in the C-terminus of HIV-1 integrase by deletion mutagenesis. , 1993, Nucleic acids research.
[59] R. Plasterk,et al. Identification of the catalytic and DNA-binding region of the human immunodeficiency virus type I integrase protein. , 1993, Nucleic acids research.
[60] J. Karn,et al. High affinity binding of TAR RNA by the human immunodeficiency virus type-1 tat protein requires base-pairs in the RNA stem and amino acid residues flanking the basic region. , 1993, Journal of molecular biology.
[61] S. Ueda,et al. Integration is essential for efficient gene expression of human immunodeficiency virus type 1 , 1993, Journal of virology.
[62] J. Puglisi,et al. Conformation of the TAR RNA-arginine complex by NMR spectroscopy. , 1992, Science.
[63] M Sumner-Smith,et al. Conserved nucleotides in the TAR RNA stem of human immunodeficiency virus type 1 are critical for Tat binding and trans activation: model for TAR RNA tertiary structure , 1992, Journal of virology.
[64] B. Berkhout,et al. Detailed mutational analysis of TAR RNA: critical spacing between the bulge and loop recognition domains. , 1991, Nucleic acids research.
[65] T. Nguyen,et al. Sequence-specific interaction of Tat protein and Tat peptides with the transactivation-responsive sequence element of human immunodeficiency virus type 1 in vitro. , 1990, Proceedings of the National Academy of Sciences of the United States of America.
[66] D M Crothers,et al. Fragments of the HIV-1 Tat protein specifically bind TAR RNA. , 1990, Science.
[67] N. Sonenberg,et al. A bulge structure in HIV-1 TAR RNA is required for Tat binding and Tat-mediated trans-activation. , 1990, Disease markers.
[68] J. Karn,et al. Human immunodeficiency virus 1 tat protein binds trans-activation-responsive region (TAR) RNA in vitro. , 1989, Proceedings of the National Academy of Sciences of the United States of America.
[69] T. Mahmoudi,et al. Transcription: Insights From the HIV-1 Promoter. , 2018, International review of cell and molecular biology.
[70] H. Le Hir,et al. Biochemical characterization of the RNA helicase UPF1 involved in nonsense-mediated mRNA decay. , 2012, Methods in enzymology.
[71] R. Craigie,et al. HIV integrase structure and function. , 1999, Advances in virus research.