Cohesin Loss Eliminates All Loop Domains
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Erez Lieberman Aiden | Sarah E. Johnstone | E. Lander | T. Schlick | B. Bernstein | A. Omer | James T. Robinson | S. Johnstone | E. Aiden | J. Engreitz | Xingfan Huang | M. Shamim | Su-Chen Huang | Suhas S. P. Rao | Ivan D. Bochkov | Adrian L. Sanborn | R. Casellas | Elizabeth M. Perez | B. G. S. Hilaire | Kyong-Rim Kieffer-Kwon | Gavin D. Bascom | Jaeweon Shin | Douglass Turner | Ziyi Ye | Arina D. Omer | A. Sanborn
[1] Mustafa Mir,et al. Phase separation drives heterochromatin domain formation , 2017, Nature.
[2] Alma L. Burlingame,et al. Liquid droplet formation by HP1α suggests a role for phase separation in heterochromatin , 2017, Nature.
[3] L. Mirny,et al. Targeted Degradation of CTCF Decouples Local Insulation of Chromosome Domains from Genomic Compartmentalization , 2017, Cell.
[4] Peter H. L. Krijger,et al. The Cohesin Release Factor WAPL Restricts Chromatin Loop Extension , 2017, Cell.
[5] T. Schlick,et al. Kilobase Pair Chromatin Fiber Contacts Promoted by Living-System-Like DNA Linker Length Distributions and Nucleosome Depletion. , 2017, The journal of physical chemistry. B.
[6] S. Q. Xie,et al. Complex multi-enhancer contacts captured by Genome Architecture Mapping (GAM) , 2017, Nature.
[7] R. Young,et al. A Phase Separation Model for Transcriptional Control , 2017, Cell.
[8] Tamar Schlick,et al. Linking Chromatin Fibers to Gene Folding by Hierarchical Looping. , 2017, Biophysical journal.
[9] M. Laub,et al. CHROMOSOMES: Bacillus subtilis SMC complexes juxtapose chromosome arms as they travel from origin to terminus , 2017 .
[10] Nuno A. Fonseca,et al. Two independent modes of chromosome organization are revealed by cohesin removal , 2016, bioRxiv.
[11] E. Lander,et al. Local regulation of gene expression by lncRNA promoters, transcription and splicing , 2016, Nature.
[12] Maxim I Molodtsov,et al. Rapid movement and transcriptional re‐localization of human cohesin on DNA , 2016, The EMBO journal.
[13] Peter G Wolynes,et al. Transferable model for chromosome architecture , 2016, Proceedings of the National Academy of Sciences.
[14] E. Nora,et al. CTCF and Cohesin in Genome Folding and Transcriptional Gene Regulation. , 2016, Annual review of genomics and human genetics.
[15] Neva C. Durand,et al. Deletion of DXZ4 on the human inactive X chromosome alters higher-order genome architecture , 2016, Proceedings of the National Academy of Sciences.
[16] James T. Robinson,et al. Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom. , 2016, Cell systems.
[17] Neva C. Durand,et al. Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments. , 2016, Cell systems.
[18] L. Mirny,et al. Formation of Chromosomal Domains in Interphase by Loop Extrusion , 2015, bioRxiv.
[19] D. Koshland,et al. Single-Molecule Imaging Reveals a Collapsed Conformational State for DNA-Bound Cohesin. , 2016, Cell reports.
[20] Y. Saga,et al. Rapid Protein Depletion in Human Cells by Auxin-Inducible Degron Tagging with Short Homology Donors. , 2016, Cell reports.
[21] Peter H. L. Krijger,et al. Cause and Consequence of Tethering a SubTAD to Different Nuclear Compartments , 2016, Molecular cell.
[22] Tamar Schlick,et al. Hierarchical looping of zigzag nucleosome chains in metaphase chromosomes , 2016, Proceedings of the National Academy of Sciences.
[23] Shawn M. Gillespie,et al. Insulator dysfunction and oncogene activation in IDH mutant gliomas , 2015, Nature.
[24] Peter H. L. Krijger,et al. CTCF Binding Polarity Determines Chromatin Looping. , 2015, Molecular cell.
[25] Neva C. Durand,et al. Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes , 2015, Proceedings of the National Academy of Sciences.
[26] Michael Q. Zhang,et al. CRISPR Inversion of CTCF Sites Alters Genome Topology and Enhancer/Promoter Function , 2015, Cell.
[27] V. Corces,et al. A CTCF Code for 3D Genome Architecture , 2015, Cell.
[28] Tamar Schlick,et al. Chromatin Unfolding by Epigenetic Modifications Explained by Dramatic Impairment of Internucleosome Interactions: A Multiscale Computational Study. , 2015, Journal of the American Chemical Society.
[29] A. Visel,et al. Disruptions of Topological Chromatin Domains Cause Pathogenic Rewiring of Gene-Enhancer Interactions , 2015, Cell.
[30] John T. Lis,et al. Getting up to speed with transcription elongation by RNA polymerase II , 2015, Nature Reviews Molecular Cell Biology.
[31] Pak Lui,et al. Strong scaling of general-purpose molecular dynamics simulations on GPUs , 2014, Comput. Phys. Commun..
[32] Neva C. Durand,et al. A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping , 2014, Cell.
[33] W. Huber,et al. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 , 2014, Genome Biology.
[34] Daniel Jost,et al. Modeling epigenome folding: formation and dynamics of topologically associated chromatin domains , 2014, Nucleic acids research.
[35] Tao Liu,et al. Use model-based Analysis of ChIP-Seq (MACS) to analyze short reads generated by sequencing protein-DNA interactions in embryonic stem cells. , 2014, Methods in molecular biology.
[36] Jesse R. Dixon,et al. Cohesin and CTCF differentially affect chromatin architecture and gene expression in human cells , 2013, Proceedings of the National Academy of Sciences.
[37] Boris Lenhard,et al. Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments , 2013, Genome research.
[38] G. Schroth,et al. Cohesin-mediated interactions organize chromosomal domain architecture , 2013, The EMBO journal.
[39] R. Young,et al. Super-Enhancers in the Control of Cell Identity and Disease , 2013, Cell.
[40] Stephen C. J. Parker,et al. Chromatin stretch enhancer states drive cell-specific gene regulation and harbor human disease risk variants , 2013, Proceedings of the National Academy of Sciences.
[41] John F. Marko,et al. Self-organization of domain structures by DNA-loop-extruding enzymes , 2012, Nucleic acids research.
[42] Data production leads,et al. An integrated encyclopedia of DNA elements in the human genome , 2012 .
[43] ENCODEConsortium,et al. An Integrated Encyclopedia of DNA Elements in the Human Genome , 2012, Nature.
[44] J. Sedat,et al. Spatial partitioning of the regulatory landscape of the X-inactivation centre , 2012, Nature.
[45] Jesse R. Dixon,et al. Topological Domains in Mammalian Genomes Identified by Analysis of Chromatin Interactions , 2012, Nature.
[46] Steven L Salzberg,et al. Fast gapped-read alignment with Bowtie 2 , 2012, Nature Methods.
[47] Andrew D. Smith,et al. Bioinformatics Applications Note Gene Expression Identifying Dispersed Epigenomic Domains from Chip-seq Data , 2022 .
[48] David A. Orlando,et al. Mediator and Cohesin Connect Gene Expression and Chromatin Architecture , 2010, Nature.
[49] Richard Durbin,et al. Fast and accurate long-read alignment with Burrows–Wheeler transform , 2010, Bioinform..
[50] I. Amit,et al. Comprehensive mapping of long range interactions reveals folding principles of the human genome , 2011 .
[51] Richard Durbin,et al. Sequence analysis Fast and accurate short read alignment with Burrows – Wheeler transform , 2009 .
[52] Joshua A. Anderson,et al. General purpose molecular dynamics simulations fully implemented on graphics processing units , 2008, J. Comput. Phys..
[53] H. Aburatani,et al. Cohesin mediates transcriptional insulation by CCCTC-binding factor , 2008, Nature.
[54] Wouter de Laat,et al. CTCF mediates long-range chromatin looping and local histone modification in the beta-globin locus. , 2006, Genes & development.
[55] K. Nasmyth. THE GENOME : Joining , Resolving , and Separating Sister Chromatids During Mitosis and Meiosis , 2006 .