RNApredator: fast accessibility-based prediction of sRNA targets
暂无分享,去创建一个
Peter F. Stadler | Hakim Tafer | Ivo L. Hofacker | Florian Eggenhofer | P. Stadler | I. Hofacker | Hakim Tafer | Florian Eggenhofer
[1] Pascale Cossart,et al. Identification of new noncoding RNAs in Listeria monocytogenes and prediction of mRNA targets , 2007, Nucleic acids research.
[2] Marshall W. Bern,et al. Glycan family analysis for deducing N-glycan topology from single MS , 2009, Bioinform..
[3] J. Lieberman,et al. Desperately seeking microRNA targets , 2010, Nature Structural &Molecular Biology.
[4] Rolf Backofen,et al. Freiburg RNA Tools: a web server integrating IntaRNA, ExpaRNA and LocARNA , 2010, Nucleic Acids Res..
[5] N. Majdalani,et al. Regulation of RpoS by a novel small RNA: the characterization of RprA. , 2001, Molecular microbiology.
[6] J. Vogel,et al. The Small RNA IstR Inhibits Synthesis of an SOS-Induced Toxic Peptide , 2004, Current Biology.
[7] J. Vogel,et al. Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation , 2009, Nature Structural &Molecular Biology.
[8] M S Waterman,et al. Identification of common molecular subsequences. , 1981, Journal of molecular biology.
[9] R. Lease,et al. A trans-acting RNA as a control switch in Escherichia coli: DsrA modulates function by forming alternative structures. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[10] Jörg Vogel,et al. How to find small non-coding RNAs in bacteria , 2005, Biological chemistry.
[11] Brian Tjaden,et al. TargetRNA: a tool for predicting targets of small RNA action in bacteria , 2008, Nucleic Acids Res..
[12] M. Cusick,et al. Riboregulation in Escherichia coli: DsrA RNA acts by RNA:RNA interactions at multiple loci. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[13] G. Storz,et al. Target prediction for small, noncoding RNAs in bacteria , 2006, Nucleic acids research.
[14] Michael Zuker,et al. Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information , 1981, Nucleic Acids Res..
[15] S. Gottesman,et al. Osmotic shock induction of capsule synthesis in Escherichia coli K-12 , 1996, Journal of bacteriology.
[16] Thomas Lengauer,et al. Improved scoring of functional groups from gene expression data by decorrelating GO graph structure , 2006, Bioinform..
[17] Rolf Backofen,et al. IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions , 2008, Bioinform..
[18] Hakim Tafer,et al. RNAplex: a fast tool for RNA-RNA interaction search , 2008, Bioinform..
[19] Peter F. Stadler,et al. Fast accessibility-based prediction of RNA-RNA interactions , 2011, Bioinform..
[20] Peter F. Stadler,et al. Translational Control by RNA-RNA Interaction: Improved Computation of RNA-RNA Binding Thermodynamics , 2008, BIRD.
[21] N. Majdalani,et al. Regulation of RpoS by a novel small RNA: the characterization of RprA , 2001 .
[22] D. Turner,et al. Predicting oligonucleotide affinity to nucleic acid targets. , 1999, RNA.
[23] G. Storz,et al. MicC, a Second Small-RNA Regulator of Omp Protein Expression in Escherichia coli , 2004, Journal of bacteriology.
[24] S. Lory,et al. Identification of 17 Pseudomonas aeruginosa sRNAs and prediction of sRNA-encoding genes in 10 diverse pathogens using the bioinformatic tool sRNAPredict2 , 2006, Nucleic acids research.
[25] Peter F. Stadler,et al. Thermodynamics of RNA-RNA Binding , 2006, German Conference on Bioinformatics.
[26] Rolf Backofen,et al. Variations on RNA folding and alignment: lessons from Benasque , 2007, Journal of mathematical biology.
[27] Stephan H. Bernhart,et al. RNA Accessibility in cubic time , 2011, Algorithms for Molecular Biology.
[28] Ronny Lorenz,et al. The Vienna RNA Websuite , 2008, Nucleic Acids Res..
[29] Hamidreza Chitsaz,et al. A partition function algorithm for interacting nucleic acid strands , 2009, Bioinform..
[30] J. Vogel,et al. Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq‐dependent small RNA , 2009, Molecular microbiology.