Superior thermotolerance of Saccharomyces cerevisiae for efficient bioethanol fermentation can be achieved by overexpression of RSP5 ubiquitin ligase.

The simultaneous saccharification and fermentation process requires thermo-tolerant yeast to facilitate the enzymatic hydrolysis of cellulose. In this paper, we describe a Htg+ strain that exhibits confluent growth at high temperature (41 °C) and resistance to heat shock, ethanol, osmotic, oxidative and DNA damage stresses. HTG6, one of the six genes responsible for the thermotolerant phenotype was identified to be the gene RSP5 encoding a ubiquitin ligase. The RSP5 allele of the Htg+ strain, designated RSP5-C, possessed five, one and two base changes in the promoter, open reading frame and terminator region, respectively. The base changes in the promoter region of the RSP5-C allele were found to be responsible for the thermotolerant phenotype by strongly increasing transcription of the RSP5 gene and consequently causing a rise in the ubiquitination of cell proteins. Overexpression of the RSP5-BY allele present in the htg6 host strain (Htg-) conferred thermotolerance at 41°C, to this strain as in the case of RSP5-C allele. We also discovered that an Htg+ strain overexpressing the RSP5-C allele exhibits a more robust Htg+ phenotype against higher temperature (43 °C). The data presented here also suggest that overexpression of RSP5 could be applied to raise the upper limit of thermotolerance in S. cerevisiae strain used for industrial bioethanol production.

[1]  H. Hoshida,et al.  High-temperature fermentation: how can processes for ethanol production at high temperatures become superior to the traditional process using mesophilic yeast? , 2009, Applied Microbiology and Biotechnology.

[2]  B. Kuhlman,et al.  G Protein Mono-ubiquitination by the Rsp 5 Ubiquitin Ligase * , 2009 .

[3]  H. Takagi,et al.  Rsp5 regulates expression of stress proteins via post‐translational modification of Hsf1 and Msn4 in Saccharomyces cerevisiae , 2006, FEBS letters.

[4]  Daniel R. Richards,et al.  Dissecting the architecture of a quantitative trait locus in yeast , 2002, Nature.

[5]  Betina Jørgensen,et al.  Bioethanol: fuel or feedstock? , 2007 .

[6]  K. O'hare,et al.  Role of RNA polymerase II carboxy-terminal domain in coordinating transcription with RNA processing. , 1998, Cold Spring Harbor symposia on quantitative biology.

[7]  K. Liukkonen,et al.  Temperature adaptation in yeasts: the role of fatty acids. , 1990, Journal of general microbiology.

[8]  V. Paschoalin,et al.  Expression of the yeast calcineurin subunits CNA1 and CNA2 during growth and hyper-osmotic stress. , 2003, FEMS microbiology letters.

[9]  A. Adams,et al.  Methods in yeast genetics : a Cold Spring Harbor Laboratory course manual , 1998 .

[10]  H. Hiraishi,et al.  Enhancement of Stress Tolerance in Saccharomyces cerevisiae by Overexpression of Ubiquitin Ligase Rsp5 and Ubiquitin-Conjugating Enzymes , 2006, Bioscience, biotechnology, and biochemistry.

[11]  W. H. Mager,et al.  Novel insights into the osmotic stress response of yeast. , 2002, FEMS yeast research.

[12]  Rob Phillips,et al.  Effect of Promoter Architecture on the Cell-to-Cell Variability in Gene Expression , 2010, PLoS Comput. Biol..

[13]  A. Goldberg,et al.  Heat shock and oxygen radicals stimulate ubiquitin-dependent degradation mainly of newly synthesized proteins , 2008, The Journal of cell biology.

[14]  F. Bai,et al.  Mechanisms of yeast stress tolerance and its manipulation for efficient fuel ethanol production. , 2009, Journal of biotechnology.

[15]  Himanshu Sinha,et al.  Complex Genetic Interactions in a Quantitative Trait Locus , 2006, PLoS genetics.

[16]  A. Aranda,et al.  Ubiquitin ligase Rsp5p is involved in the gene expression changes during nutrient limitation in Saccharomyces cerevisiae , 2009, Yeast.

[17]  K. Verstrepen,et al.  Promoter architecture and the evolvability of gene expression , 2009, Journal of biology.

[18]  A. Hopper,et al.  Rsp5p, a New Link between the Actin Cytoskeleton and Endocytosis in the Yeast Saccharomyces cerevisiae , 2002, Molecular and Cellular Biology.

[19]  J. Huibregtse,et al.  The large subunit of RNA polymerase II is a substrate of the Rsp5 ubiquitin-protein ligase. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[20]  J. Baeza,et al.  Selection of thermotolerant yeast strains Saccharomyces cerevisiae for bioethanol production , 2008 .

[21]  Kui Yang,et al.  Cotransport of the Heterodimeric Small Subunit of the Saccharomyces cerevisiae Ribonucleotide Reductase Between the Nucleus and the Cytoplasm , 2006, Genetics.

[22]  S. Rosenberg,et al.  Mutation as a Stress Response and the Regulation of Evolvability , 2007, Critical reviews in biochemistry and molecular biology.

[23]  F. Sherman Getting started with yeast. , 1991, Methods in enzymology.

[24]  H. Takagi,et al.  Rsp5 is required for the nuclear export of mRNA of HSF1 and MSN2/4 under stress conditions in Saccharomyces cerevisiae , 2008, Genes to cells : devoted to molecular & cellular mechanisms.

[25]  H. Takagi,et al.  A nonconserved Ala401 in the yeast Rsp5 ubiquitin ligase is involved in degradation of Gap1 permease and stress-induced abnormal proteins , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[26]  J. Svejstrup,et al.  Hyperphosphorylation of the C-terminal Repeat Domain of RNA Polymerase II Facilitates Dissociation of Its Complex with Mediator* , 2007, Journal of Biological Chemistry.

[27]  J. Huibregtse,et al.  Rsp5 Ubiquitin-Protein Ligase Mediates DNA Damage-Induced Degradation of the Large Subunit of RNA Polymerase II in Saccharomyces cerevisiae , 1999, Molecular and Cellular Biology.

[28]  Nicola J. Rinaldi,et al.  Transcriptional regulatory code of a eukaryotic genome , 2004, Nature.

[29]  G. Lidén,et al.  Prefermentation improves xylose utilization in simultaneous saccharification and co-fermentation of pretreated spruce , 2009, Biotechnology for biofuels.

[30]  R. Hartmann-Petersen,et al.  Ubiquitin-binding proteins: similar, but different. , 2005, Essays in biochemistry.

[31]  H. Bussey,et al.  Cell Wall Assembly in Saccharomyces cerevisiae , 2006, Microbiology and Molecular Biology Reviews.

[32]  J. Boeke,et al.  Designer deletion strains derived from Saccharomyces cerevisiae S288C: A useful set of strains and plasmids for PCR‐mediated gene disruption and other applications , 1998, Yeast.

[33]  W. H. Mager,et al.  Response to high osmotic conditions and elevated temperature in Saccharomyces cerevisiae is controlled by intracellular glycerol and involves coordinate activity of MAP kinase pathways. , 2003, Microbiology.

[34]  J. Duval,et al.  The role of the heat shock protein Hsp12p in the dynamic response of Saccharomyces cerevisiae to the addition of Congo red. , 2009, FEMS yeast research.

[35]  L. Hicke,et al.  Regulation of the RSP5 Ubiquitin Ligase by an Intrinsic Ubiquitin-binding Site* , 2009, Journal of Biological Chemistry.

[36]  Linda Hicke,et al.  Regulation of membrane protein transport by ubiquitin and ubiquitin-binding proteins. , 2003, Annual review of cell and developmental biology.

[37]  T. Zoladek,et al.  The Role of Rsp5 Ubiquitin Ligase in Regulation of Diverse Processes in Yeast Cells , 2008 .

[38]  Y. Noda,et al.  Peculiar Protein–Protein Interactions of the Novel Endoplasmic Reticulum Membrane Protein Rcr1 and Ubiquitin Ligase Rsp5 , 2007, Bioscience, biotechnology, and biochemistry.

[39]  S. Lindquist Heat-shock proteins and stress tolerance in microorganisms , 1992, Current Biology.

[40]  G. Dianov,et al.  Regulation of DNA repair by ubiquitylation , 2011, Biochemistry (Moscow).

[41]  B. Hahn-Hägerdal,et al.  Arabinose and xylose fermentation by recombinant Saccharomyces cerevisiae expressing a fungal pentose utilization pathway , 2009, Microbial cell factories.

[42]  Michael Ruogu Zhang,et al.  Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. , 1998, Molecular biology of the cell.

[43]  L. Lynd,et al.  A Kinetic Model for Simultaneous Saccharification and Fermentation of Avicel With Saccharomyces cerevisiae , 2011, Biotechnology and bioengineering.

[44]  T. Maeda,et al.  Phosphorelay-Regulated Degradation of the Yeast Ssk1p Response Regulator by the Ubiquitin-Proteasome System , 2003, Molecular and Cellular Biology.

[45]  D. Dubourdieu,et al.  Genetic improvement of thermo-tolerance in wine Saccharomyces cerevisiae strains by a backcross approach. , 2009, FEMS yeast research.

[46]  S. Elledge,et al.  Control of ribonucleotide reductase localization through an anchoring mechanism involving Wtm1. , 2006, Genes & development.

[47]  R. Kölling,et al.  The HECT E3 ubiquitin ligase Rsp5 is important for ubiquitin homeostasis in yeast , 2004, FEBS letters.

[48]  C. Boonchird,et al.  CDC19 encoding pyruvate kinase is important for high-temperature tolerance in Saccharomyces cerevisiae. , 2012, New biotechnology.

[49]  I. Ota,et al.  Heat Stress Activates the Yeast High-Osmolarity Glycerol Mitogen-Activated Protein Kinase Pathway, and Protein Tyrosine Phosphatases Are Essential under Heat Stress , 2002, Eukaryotic Cell.

[50]  A. Goldberg,et al.  Protein degradation and protection against misfolded or damaged proteins , 2003, Nature.

[51]  A. Haas Regulating the regulator: Rsp5 ubiquitinates the proteasome. , 2010, Molecular cell.

[52]  Yu-Yi Lin,et al.  Functional Dissection of a HECT Ubiquitin E3 Ligase*S , 2008, Molecular & Cellular Proteomics.

[53]  E. Cho,et al.  Role of RNA polymerase II carboxy terminal domain phosphorylation in DNA damage response. , 2005, Journal of Microbiology.

[54]  A. Hopper,et al.  Rsp5 ubiquitin ligase modulates translation accuracy in yeast Saccharomyces cerevisiae. , 2005, RNA.