Review of a current role of mass spectrometry for proteome research.
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[1] P. Derrick,et al. Energy transfer in the collision induced decomposition of peptide ions formed by field desorption , 1984 .
[2] Melanie E. Goward,et al. The DNA sequence of human chromosome 22 , 1999, Nature.
[3] R D Appel,et al. Inside SWISS‐2DPAGE database , 1995, Electrophoresis.
[4] A. Makarov,et al. The Orbitrap: a new mass spectrometer. , 2005, Journal of mass spectrometry : JMS.
[5] S. Martin,et al. Oligonucleotide Sequencing by Fragmentation in Matrix‐assisted Laser Desorption/Ionization Time‐of‐flight Mass Spectrometry , 1997 .
[6] E. P. Kennedy,et al. The enzymatic phosphorylation of proteins. , 1954, The Journal of biological chemistry.
[7] R. Cooks,et al. Internal energy distributions of isolated ions after activation by various methods , 1987 .
[8] F. Dubois,et al. The Matrix Suppression Effect and Ionization Mechanisms in Matrix‐assisted Laser Desorption/Ionization , 1996 .
[9] W. Haddon,et al. Metastable ion characteristics. VII. Collision-induced metastables , 1968 .
[10] P. O’Farrell. High resolution two-dimensional electrophoresis of proteins. , 1975, The Journal of biological chemistry.
[11] K. Biemann,et al. The effect of charge state and the localization of charge on the collision-induced dissociation of peptide ions , 1994, Journal of the American Society for Mass Spectrometry.
[12] R. Zenobi,et al. Ion formation in MALDI mass spectrometry , 1999 .
[13] P. Levene,et al. THE CLEAVAGE PRODUCTS OF VITELLIN , 1906 .
[14] W. R. Garrett,et al. Laser-induced acoustic desorption , 1997 .
[15] R. Cooks,et al. Preparative linear ion trap mass spectrometer for separation and collection of purified proteins and peptides in arrays using ion soft landing. , 2004, Analytical Chemistry.
[16] Alexander Makarov,et al. Dynamic range of mass accuracy in LTQ orbitrap hybrid mass spectrometer , 2006, Journal of the American Society for Mass Spectrometry.
[17] J. Yates,et al. A model for random sampling and estimation of relative protein abundance in shotgun proteomics. , 2004, Analytical chemistry.
[18] Xin Liu,et al. Mass spectrometry-based glycomics strategy for exploring N-linked glycosylation in eukaryotes and bacteria. , 2006, Analytical chemistry.
[19] F. Sanger,et al. DNA sequencing with chain-terminating inhibitors. , 1977, Proceedings of the National Academy of Sciences of the United States of America.
[20] T. W. Jordan,et al. A double‐label two‐dimensional procedure for the analysis of membrane proteins , 1988, Electrophoresis.
[21] G. Siuzdak,et al. Desorption–ionization mass spectrometry on porous silicon , 1999, Nature.
[22] Wei‐Chao Chang,et al. α1-Antitrypsin Precursor in Gastric Juice Is a Novel Biomarker for Gastric Cancer and Ulcer , 2007, Clinical Cancer Research.
[23] R. Levine,et al. Homogeneous bottleneck model of matrix‐assisted ultraviolet laser desorption of large molecules , 1990 .
[24] S. Gygi,et al. Quantitative analysis of complex protein mixtures using isotope-coded affinity tags , 1999, Nature Biotechnology.
[25] E. Petricoin,et al. Use of proteomic patterns in serum to identify ovarian cancer , 2002, The Lancet.
[26] M. Mann,et al. A practical recipe for stable isotope labeling by amino acids in cell culture (SILAC) , 2006, Nature Protocols.
[27] F W McLafferty,et al. Infrared multiphoton dissociation of large multiply charged ions for biomolecule sequencing. , 1994, Analytical chemistry.
[28] H. R. Bergen,et al. A Method for Automatically Interpreting Mass Spectra of 18O-Labeled Isotopic Clusters*S , 2007, Molecular & Cellular Proteomics.
[29] M. Mann,et al. Stable isotope labeling by amino acids in cell culture for quantitative proteomics. , 2007, Methods in molecular biology.
[30] M. Mann,et al. Stable Isotope Labeling by Amino Acids in Cell Culture, SILAC, as a Simple and Accurate Approach to Expression Proteomics* , 2002, Molecular & Cellular Proteomics.
[31] H. Yamagishi,et al. Titration of serum p53 antibodies in patients with gastric cancer: a single-institute study of 40 patients , 2005, Gastric Cancer.
[32] Timothy B. Stockwell,et al. The Sequence of the Human Genome , 2001, Science.
[33] Chun-Ta Liao,et al. Oral cancer plasma tumor marker identified with bead-based affinity-fractionated proteomic technology. , 2005, Clinical chemistry.
[34] Richard D. Smith,et al. Proteomics by FTICR mass spectrometry: top down and bottom up. , 2005, Mass spectrometry reviews.
[35] R. Cooks,et al. Ambient mass spectrometry using desorption electrospray ionization (DESI): instrumentation, mechanisms and applications in forensics, chemistry, and biology. , 2005, Journal of mass spectrometry : JMS.
[36] M. Cull,et al. Preparation of extracts from prokaryotes. , 1990, Methods in enzymology.
[37] M. Mann,et al. Properties of 13C-substituted arginine in stable isotope labeling by amino acids in cell culture (SILAC). , 2003, Journal of proteome research.
[38] S. Martin,et al. Laser desorption mass spectrometry for point mutation detection. , 1996, Genetic analysis : biomolecular engineering.
[39] K. Parker,et al. Multiplexed Protein Quantitation in Saccharomyces cerevisiae Using Amine-reactive Isobaric Tagging Reagents*S , 2004, Molecular & Cellular Proteomics.
[40] Gerard Cagney,et al. Computational methods for the comparative quantification of proteins in label-free LCn-MS experiments , 2007, Briefings Bioinform..
[41] Tsuyoshi Tabata,et al. Pseudo internal standard approach for label-free quantitative proteomics. , 2007, Analytical chemistry.
[42] F. McLafferty,et al. Electron Capture Dissociation of Multiply Charged Protein Cations. A Nonergodic Process , 1998 .
[43] G. McAlister,et al. Supplemental activation method for high-efficiency electron-transfer dissociation of doubly protonated peptide precursors. , 2007, Analytical chemistry.
[44] M. Karas,et al. Laser desorption ionization of proteins with molecular masses exceeding 10,000 daltons. , 1988, Analytical chemistry.
[45] M. Karas,et al. Role of photoionization and photochemistry in ionization processes of organic molecules and relevance for matrix-assisted laser desorption lonization mass spectrometry† , 1992 .
[46] P. Mecocci,et al. Arginine vasopressin in the cytoplasm and nuclear fraction of lymphocytes from healthy donors and patients with depression or schizophrenia , 2001, Peptides.
[47] N. Duraker,et al. The prognostic significance of gastric juice CA 19-9 and CEA levels in gastric carcinoma patients. , 2002, European journal of surgical oncology : the journal of the European Society of Surgical Oncology and the British Association of Surgical Oncology.
[48] C. G. Edmonds,et al. Effect of reducing disulfide-containing proteins on electrospray ionization mass spectra. , 1990, Analytical chemistry.
[49] Richard D. Smith,et al. Proteomic analyses using an accurate mass and time tag strategy. , 2004, BioTechniques.
[50] Michael Karas,et al. Analysis of neutral oligosaccharides by matrix-assisted laser desorption ionization mass spectrometry , 1991 .
[51] Emanuel Schwarz,et al. Label-free LC-MS/MS quantitative proteomics for large-scale biomarker discovery in complex samples. , 2007, Journal of separation science.
[52] G. Siuzdak,et al. Nanoelectrospray mass spectrometry and precursor ion monitoring for quantitative steroid analysis and attomole sensitivity. , 1999, Analytical chemistry.
[53] P. Roepstorff,et al. Proposal for a common nomenclature for sequence ions in mass spectra of peptides. , 1984, Biomedical mass spectrometry.
[54] B. Chait. Mass Spectrometry: Bottom-Up or Top-Down? , 2006, Science.
[55] Michelle L. Reyzer,et al. MALDI-MS-based imaging of small molecules and proteins in tissues. , 2007, Current Opinion in Chemical Biology.
[56] Kaj Blennow,et al. Proteome analysis of cerebrospinal fluid proteins in Alzheimer patients , 2002, Neuroreport.
[57] R. Gijbels,et al. Hydrodynamic Model of Matrix-Assisted Laser Desorption Mass Spectrometry , 1993 .
[58] P. Budde,et al. Peptidomics analysis of human blood specimens for biomarker discovery , 2007, Expert review of molecular diagnostics.
[59] R. Cooks,et al. Mass Spectrometry Sampling Under Ambient Conditions with Desorption Electrospray Ionization , 2004, Science.
[60] C. Watanabe,et al. Identifying proteins from two-dimensional gels by molecular mass searching of peptide fragments in protein sequence databases. , 1993, Proceedings of the National Academy of Sciences of the United States of America.
[61] Scott A McLuckey,et al. 'Top down' protein characterization via tandem mass spectrometry. , 2002, Journal of mass spectrometry : JMS.
[62] D. Schwartz,et al. Separation of yeast chromosome-sized DNAs by pulsed field gradient gel electrophoresis , 1984, Cell.
[63] R. Ekman,et al. Proteomics and peptidomics in neuroscience. Experience of capabilities and limitations in a neurochemical laboratory. , 2005, Journal of mass spectrometry : JMS.
[64] R. Beynon,et al. Multiplexed absolute quantification in proteomics using artificial QCAT proteins of concatenated signature peptides , 2005, Nature Methods.
[65] Ericka Stricklin-Parker,et al. Ann , 2005 .
[66] Huanwen Chen,et al. Desorption electrospray ionization of explosives on surfaces: sensitivity and selectivity enhancement by reactive desorption electrospray ionization. , 2005, Analytical chemistry.
[67] M. Schell,et al. Detection of ΔF508 mutation of the cystic fibrosis gene by matrix‐assisted laser desorption/ionization mass spectrometry , 1995 .
[68] K. Resing,et al. Comparison of Label-free Methods for Quantifying Human Proteins by Shotgun Proteomics*S , 2005, Molecular & Cellular Proteomics.
[69] Neil Swainston,et al. Capture and analysis of quantitative proteomic data , 2007, Proteomics.
[70] M. Karas,et al. Analyte incorporation and ionization in matrix-assisted laser desorption/ionization visualized by pH indicator molecular probes. , 2001, Analytical chemistry.
[71] F. McLafferty,et al. Extending Top-Down Mass Spectrometry to Proteins with Masses Greater Than 200 Kilodaltons , 2006, Science.
[72] Koichi Tanaka,et al. Protein and polymer analyses up to m/z 100 000 by laser ionization time-of-flight mass spectrometry , 1988 .
[73] M Karas,et al. Ionization in matrix-assisted laser desorption/ionization: singly charged molecular ions are the lucky survivors. , 2000, Journal of mass spectrometry : JMS.
[74] X. Yao,et al. Proteolytic 18O labeling for comparative proteomics: model studies with two serotypes of adenovirus. , 2001, Analytical chemistry.
[75] Huan-Cheng Chang,et al. Matrix-assisted laser desorption/ionization (MALDI) mechanism revisited. , 2007, Analytica chimica acta.
[76] N. Seidah,et al. The Subtilisin/Kexin Family of Precursor Convertases: Emphasis on PC1, PC2/7B2, POMC and the Novel Enzyme SKI‐1 , 1999, Annals of the New York Academy of Sciences.
[77] Huan-Cheng Chang,et al. Charge monitoring cell mass spectrometry. , 2008, Analytical chemistry.
[78] K. Blennow,et al. Characterization of proteins from human cerebrospinal fluid by a combination of preparative two-dimensional liquid-phase electrophoresis and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. , 1999, Analytical chemistry.
[79] Detection of trinucleotide expansion in neurodegenerative disease by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. , 1999, Genetic analysis : biomolecular engineering.
[80] B. Ueberheide,et al. The utility of ETD mass spectrometry in proteomic analysis. , 2006, Biochimica et biophysica acta.
[81] I. Papayannopoulos,et al. The interpretation of collision‐induced dissociation tandem mass spectra of peptides , 1996 .
[82] H. Cooper,et al. The role of electron capture dissociation in biomolecular analysis. , 2005, Mass spectrometry reviews.
[83] M. Ünlü,et al. Difference gel electrophoresis. A single gel method for detecting changes in protein extracts , 1997, Electrophoresis.
[84] Richard M Caprioli,et al. New developments in profiling and imaging of proteins from tissue sections by MALDI mass spectrometry. , 2006, Journal of proteome research.
[85] Sequencing DNA using mass spectrometry for ladder detection. , 1998, Nucleic acids research.
[86] K. Jennings. Collision-induced decompositions of aromatic molecular ions , 1968 .
[87] Brian T. Chait,et al. Probing conformational changes in proteins by mass spectrometry , 1990 .
[88] T. Veenstra,et al. Phosphoproteomics for the discovery of kinases as cancer biomarkers and drug targets , 2007, Proteomics. Clinical applications.
[89] Miss A.O. Penney. (b) , 1974, The New Yale Book of Quotations.
[90] Richard M Caprioli,et al. Tissue Profiling by Mass Spectrometry , 2005, Molecular & Cellular Proteomics.
[91] D. Harvey,et al. Matrix-assisted laser desorption/ionization mass spectrometry of carbohydrates. , 1999, Mass spectrometry reviews.
[92] D. N. Perkins,et al. Probability‐based protein identification by searching sequence databases using mass spectrometry data , 1999, Electrophoresis.
[93] G. McAlister,et al. Implementation of electron-transfer dissociation on a hybrid linear ion trap-orbitrap mass spectrometer. , 2007, Analytical chemistry.
[94] Yan-Kai Tzeng,et al. Laser-induced acoustic desorption mass spectrometry of single bioparticles. , 2006, Angewandte Chemie.
[95] Wei‐Chao Chang,et al. Observation of peptide differences between cancer and control in gastric juice , 2008, Proteomics. Clinical applications.
[96] F. McLafferty,et al. Top-down mass spectrometry of a 29-kDa protein for characterization of any posttranslational modification to within one residue , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[97] A. Makarov,et al. Performance evaluation of a hybrid linear ion trap/orbitrap mass spectrometer. , 2006, Analytical chemistry.
[98] Darryl B. Hardie,et al. Mass spectrometric quantitation of peptides and proteins using Stable Isotope Standards and Capture by Anti-Peptide Antibodies (SISCAPA). , 2004, Journal of proteome research.
[99] F. Lottspeich,et al. Identification of stress proteins in endothelial cells , 1996, Electrophoresis.
[100] R. Levine,et al. Sublimation versus fragmentation in matrix-assisted laser desorption , 1990 .
[101] Michael Karas,et al. Ion formation in MALDI: the cluster ionization mechanism. , 2003, Chemical reviews.
[102] K. Tsao,et al. Serum TIMP-1 in gastric cancer patients: a potential prognostic biomarker. , 2006, Annals of clinical and laboratory science.
[103] W. Ha,et al. The differential proteome profile of stomach cancer: identification of the biomarker candidates. , 2004, Oncology research.
[104] Neil L. Kelleher,et al. Peer Reviewed: Top-Down Proteomics , 2004 .
[105] T. Shaler,et al. Quantification of proteins and metabolites by mass spectrometry without isotopic labeling or spiked standards. , 2003, Analytical chemistry.
[106] J. Asenjo,et al. Enzymatic lysis of microbial cells , 2007, Biotechnology Letters.
[107] C. Bohring,et al. The characterization of human spermatozoa membrane proteins — surface antigens and immunological infertility , 1999, Electrophoresis.
[108] J. Shabanowitz,et al. Peptide and protein sequence analysis by electron transfer dissociation mass spectrometry. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[109] W. Gilbert,et al. A new method for sequencing DNA. , 1977, Proceedings of the National Academy of Sciences of the United States of America.
[110] C. Borchers,et al. Direct MALDI-MS/MS of phosphopeptides affinity-bound to immobilized metal ion affinity chromatography beads. , 2002, Analytical chemistry.
[111] K. Biemann. Contributions of mass spectrometry to peptide and protein structure. , 1988, Biomedical & environmental mass spectrometry.
[112] M. Chu,et al. Charge-monitoring laser-induced acoustic desorption mass spectrometry for cell and microparticle mass distribution measurement. , 2007, Angewandte Chemie.
[113] G. G. Stokes. "J." , 1890, The New Yale Book of Quotations.
[114] B. Chait,et al. Mapping protein-protein interactions by affinity-directed mass spectrometry. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[115] P. Proost,et al. Dipeptidyl peptidase IV substrates. An update on in vitro peptide hydrolysis by human DPPIV. , 2003, Advances in experimental medicine and biology.
[116] Mark R. Marten,et al. Comparison of lysis methods and preparation protocols for one‐ and two‐dimensional electrophoresis of Aspergillus oryzae intracellular proteins , 2002, Electrophoresis.
[117] A. Sudbø. MULTIPHOTON DISSOCIATION PRODUCTS FROM HALOGENATED HYDROCARBONS , 1977 .