Comparison of partial least squares and support vector regressions for predicting leaf area index on a tropical grassland using hyperspectral data

Abstract. Leaf area index (LAI) is a key biophysical parameter commonly used to determine vegetation status, productivity, and health in tropical grasslands. Accurate LAI estimates are useful in supporting sustainable rangeland management by providing information related to grassland condition and associated goods and services. The performance of support vector regression (SVR) was compared to partial least square regression (PLSR) on selected optimal hyperspectral bands to detect LAI in heterogeneous grassland. Results show that PLSR performed better than SVR at the beginning and end of summer. At the peak of the growing season (mid-summer), during reflectance saturation, SVR models yielded higher accuracies (R2=0.902 and RMSE=0.371  m2 m−2) than PLSR models (R2=0.886 and RMSE=0.379  m2 m−2). For the combined dataset (all of summer), SVR models were slightly more accurate (R2=0.74 and RMSE=0.578  m2 m−2) than PLSR models (R2=0.732 and RMSE=0.58  m2 m−2). Variable importance on the projection scores show that most of the bands were located in the near-infrared and shortwave regions of the electromagnetic spectrum, thus providing a basis to investigate the potential of sensors on aerial and satellite platforms for large-scale grassland LAI prediction.

[1]  Onisimo Mutanga,et al.  Spectral resampling based on user-defined inter-band correlation filter: C3 and C4 grass species classification , 2013, Int. J. Appl. Earth Obs. Geoinformation.

[2]  Ron Kohavi,et al.  A Study of Cross-Validation and Bootstrap for Accuracy Estimation and Model Selection , 1995, IJCAI.

[3]  Onisimo Mutanga,et al.  Commercial tree species discrimination using airborne AISA Eagle hyperspectral imagery and partial least squares discriminant analysis (PLS-DA) in KwaZulu-Natal, South Africa , 2013 .

[4]  Xulin Guo,et al.  Remote Sensing of Leaf Area Index (LAI) and a Spatiotemporally Parameterized Model for Mixed Grasslands , 2014 .

[5]  Arko Lucieer,et al.  Antarctic moss stress assessment based on chlorophyll content and leaf density retrieved from imaging spectroscopy data. , 2015, The New phytologist.

[6]  Jin Chen,et al.  Estimating aboveground biomass of grassland having a high canopy cover: an exploratory analysis of in situ hyperspectral data , 2009 .

[7]  David J. Sheskin,et al.  Handbook of Parametric and Nonparametric Statistical Procedures , 1997 .

[8]  N. Breda Ground-based measurements of leaf area index: a review of methods, instruments and current controversies. , 2003, Journal of experimental botany.

[9]  Michele Meroni,et al.  Identification of hyperspectral vegetation indices for Mediterranean pasture characterization , 2009, Int. J. Appl. Earth Obs. Geoinformation.

[10]  Clement Atzberger,et al.  Comparative analysis of three chemometric techniques for the spectroradiometric assessment of canopy chlorophyll content in winter wheat , 2010 .

[11]  P. Thenkabail,et al.  Hyperspectral Vegetation Indices and Their Relationships with Agricultural Crop Characteristics , 2000 .

[12]  Ervin Balázs,et al.  Karrikinolide residues in grassland soils following fire: Implications on germination activity , 2013 .

[13]  H. Snyman,et al.  Short-term effects of soil water, defoliation and rangeland condition on productivity of a semi-arid rangeland in South Africa , 1999 .

[14]  Ellsworth F. LeDrew,et al.  Spectral Discrimination of Healthy and Non-Healthy Corals Based on Cluster Analysis, Principal Components Analysis, and Derivative Spectroscopy , 1998 .

[15]  Andrea Foetzki,et al.  Variation in leaf area index and stand leaf mass of European beech across gradients of soil acidity and precipitation , 2006, Plant Ecology.

[16]  W. Verhoef,et al.  Hyperspectral analysis of mangrove foliar chemistry using PLSR and support vector regression , 2013 .

[17]  L. Buydens,et al.  Determination of optimal support vector regression parameters by genetic algorithms and simplex optimization , 2005 .

[18]  S. Wold,et al.  PLS-regression: a basic tool of chemometrics , 2001 .

[19]  Holger R. Maier,et al.  Data splitting for artificial neural networks using SOM-based stratified sampling , 2010, Neural Networks.

[20]  Flor Álvarez-Taboada,et al.  Spectroscopic Determination of Aboveground Biomass in Grasslands Using Spectral Transformations, Support Vector Machine and Partial Least Squares Regression , 2013, Sensors.

[21]  J. Chen,et al.  Retrieving Leaf Area Index of Boreal Conifer Forests Using Landsat TM Images , 1996 .

[22]  O. Mutanga,et al.  A comparison of partial least squares (PLS) and sparse PLS regressions for predicting yield of Swiss chard grown under different irrigation water sources using hyperspectral data , 2014 .

[23]  A. Skidmore,et al.  Mapping spatio-temporal variation of grassland quantity and quality using MERIS data and the PROSAIL model , 2012 .

[24]  N. Broge,et al.  Deriving green crop area index and canopy chlorophyll density of winter wheat from spectral reflectance data , 2002 .

[25]  R. Tobias An Introduction to Partial Least Squares Regression , 1996 .

[26]  C. S. Everson,et al.  A field assessment of the agronomic performance and water use of Jatropha curcas in South Africa , 2013 .

[27]  Xiaoyu Song,et al.  Exploring the Best Hyperspectral Features for LAI Estimation Using Partial Least Squares Regression , 2014, Remote. Sens..

[28]  Alexander J. Smola,et al.  Support Vector Regression Machines , 1996, NIPS.

[29]  Yuhong He,et al.  Studying mixed grassland ecosystems I: suitable hyperspectral vegetation indices , 2006 .

[30]  Scott E. Maxwell,et al.  Designing Experiments and Analyzing Data: A Model Comparison Perspective , 1990 .

[31]  W. Cohen,et al.  Hyperspectral versus multispectral data for estimating leaf area index in four different biomes , 2004 .

[32]  Sylvain Arlot,et al.  A survey of cross-validation procedures for model selection , 2009, 0907.4728.

[33]  Anthony Mills,et al.  Frequent fires intensify soil crusting: physicochemical feedback in the pedoderm of long-term burn experiments in South Africa. , 2004 .

[34]  Clement Atzberger,et al.  Estimation of vegetation LAI from hyperspectral reflectance data: Effects of soil type and plant architecture , 2008, Int. J. Appl. Earth Obs. Geoinformation.

[35]  Jan G. P. W. Clevers,et al.  Using Hyperspectral Remote Sensing Data for Retrieving Canopy Chlorophyll and Nitrogen Content , 2012, IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing.

[36]  A. Huete,et al.  The use of vegetation indices in forested regions: issues of linearity and saturation , 1997, IGARSS'97. 1997 IEEE International Geoscience and Remote Sensing Symposium Proceedings. Remote Sensing - A Scientific Vision for Sustainable Development.

[37]  Rob Marchant,et al.  Leaf area index for biomes of the Eastern Arc Mountains: Landsat and SPOT observations along precipitation and altitude gradients , 2012 .

[38]  J. Schjoerring,et al.  Reflectance measurement of canopy biomass and nitrogen status in wheat crops using normalized difference vegetation indices and partial least squares regression , 2003 .

[39]  Bernhard Schölkopf,et al.  A tutorial on support vector regression , 2004, Stat. Comput..

[40]  M. Cho,et al.  Non-linear partial least square regression increases the estimation accuracy of grass nitrogen and phosphorus using in situ hyperspectral and environmental data , 2013 .

[41]  A. Skidmore,et al.  Mapping grassland leaf area index with airborne hyperspectral imagery : a comparison study of statistical approaches and inversion of radiative transfer models , 2011 .

[42]  Chaoyang Wu,et al.  Estimating chlorophyll content from hyperspectral vegetation indices : Modeling and validation , 2008 .

[43]  I. Panderi,et al.  Kinetic study on the acidic hydrolysis of lorazepam by a zero-crossing first-order derivative UV-spectrophotometric technique. , 1999, Talanta.

[44]  L. Buydens,et al.  Comparing support vector machines to PLS for spectral regression applications , 2004 .

[45]  P. C. Doraiswamya,et al.  Crop condition and yield simulations using Landsat and MODIS , 2004 .

[46]  Andrew K. Skidmore,et al.  Estimation of green grass/herb biomass from airborne hyperspectral imagery using spectral indices and partial least squares regression , 2007, Int. J. Appl. Earth Obs. Geoinformation.

[47]  Ozgur Yeniay,et al.  A comparison of partial least squares regression with other prediction methods , 2001 .

[48]  J. Qi,et al.  A comparative analysis of broadband and narrowband derived vegetation indices in predicting LAI and CCD of a cotton canopy , 2007 .

[49]  A. Huete,et al.  Estimating biophysical parameters of rice with remote sensing data using support vector machines , 2011, Science China Life Sciences.

[50]  Yuhong He,et al.  Comparison of different methods for measuring leaf area index in a mixed grassland , 2007 .

[51]  Clement Atzberger,et al.  LAI and chlorophyll estimation for a heterogeneous grassland using hyperspectral measurements , 2008 .

[52]  Elfatih M. Abdel-Rahman,et al.  Varietal discrimination of common dry bean (Phaseolus vulgaris L.) grown under different watering regimes using multitemporal hyperspectral data , 2015 .

[53]  Achim Röder,et al.  Adaptation of a grazing gradient concept to heterogeneous Mediterranean rangelands using cost surface modelling , 2007 .

[54]  D. H. K. Fairbanks,et al.  Use patterns and value of Savanna resources in three Rural villages in South Africa , 2002, Economic Botany.

[55]  R. Jensen,et al.  Modeling urban leaf area index with AISA+ hyperspectral data , 2009 .

[56]  Fumin Wang,et al.  Optimal waveband identification for estimation of leaf area index of paddy rice , 2008, Journal of Zhejiang University SCIENCE B.

[57]  Jian Zhang,et al.  A comparative study on wheat leaf area index by different measurement methods , 2012, 2012 First International Conference on Agro- Geoinformatics (Agro-Geoinformatics).

[58]  Zhang-hua Lou,et al.  A comparison of three methods for estimating leaf area index of paddy rice from optimal hyperspectral bands , 2011, Precision Agriculture.

[59]  L. A. Stone,et al.  Computer Aided Design of Experiments , 1969 .

[60]  Weixing Cao,et al.  [Quantitative relationships between leaf area index and canopy reflectance spectra of wheat]. , 2006, Ying yong sheng tai xue bao = The journal of applied ecology.

[61]  Menglong Li,et al.  Mutual information-induced interval selection combined with kernel partial least squares for near-infrared spectral calibration. , 2008, Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy.

[62]  Ruiliang Pu,et al.  Estimation of forest leaf area index using vegetation indices derived from Hyperion hyperspectral data , 2003, IEEE Trans. Geosci. Remote. Sens..

[63]  Jungho Im,et al.  ISPRS Journal of Photogrammetry and Remote Sensing , 2022 .