The structure and function of the eukaryotic ribosome.
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[1] Jianli Lu,et al. Mapping the electrostatic potential within the ribosomal exit tunnel. , 2007, Journal of molecular biology.
[2] Marco Gartmann,et al. Signal Recognition Particle Receptor Exposes the Ribosomal Translocon Binding Site , 2006, Science.
[3] S. Marzi,et al. A structural view of translation initiation in bacteria , 2009, Cellular and Molecular Life Sciences.
[4] A. Hinnebusch,et al. eIF3a cooperates with sequences 5' of uORF1 to promote resumption of scanning by post-termination ribosomes for reinitiation on GCN4 mRNA. , 2008, Genes & development.
[5] G. Wagner,et al. Position of eukaryotic initiation factor eIF1 on the 40S ribosomal subunit determined by directed hydroxyl radical probing. , 2003, Genes & development.
[6] C. Deutsch. The Birth of a Channel , 2003, Neuron.
[7] The structure of the 80S ribosome from Trypanosoma cruzi reveals unique rRNA components. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[8] Joachim Frank,et al. The Cryo-EM Structure of a Translation Initiation Complex from Escherichia coli , 2005, Cell.
[9] J. Frank,et al. A model of protein synthesis based on cryo-electron microscopy of the E. coli ribosome , 1995, Nature.
[10] J. Lorsch,et al. rRNA Suppressor of a Eukaryotic Translation Initiation Factor 5B/Initiation Factor 2 Mutant Reveals a Binding Site for Translational GTPases on the Small Ribosomal Subunit , 2008, Molecular and Cellular Biology.
[11] Mikkel A. Algire,et al. Dissociation of eIF1 from the 40S ribosomal subunit is a key step in start codon selection in vivo. , 2007, Genes & development.
[12] Joachim Frank,et al. Localization and dynamic behavior of ribosomal protein L30e , 2005, Nature Structural &Molecular Biology.
[13] J. Nyborg,et al. Structural Basis for Nucleotide Exchange and Competition with tRNA in the Yeast Elongation Factor Complex eEF1A:eEF1Bα , 2000 .
[14] R. Jackson,et al. The mechanism of eukaryotic translation initiation and principles of its regulation , 2010, Nature Reviews Molecular Cell Biology.
[15] T. Mielke,et al. Structural basis for the binding of IRES RNAs to the head of the ribosomal 40S subunit , 2011, Nucleic acids research.
[16] N. Ban,et al. Crystal Structure of the Eukaryotic 40S Ribosomal Subunit in Complex with Initiation Factor 1 , 2011, Science.
[17] B. Vestergaard,et al. Bacterial polypeptide release factor RF2 is structurally distinct from eukaryotic eRF1. , 2001, Molecular cell.
[18] L. Valášek,et al. The eIF3c/NIP1 PCI domain interacts with RNA and RACK1/ASC1 and promotes assembly of translation preinitiation complexes , 2011, Nucleic acids research.
[19] J. Frank,et al. Identification of the versatile scaffold protein RACK1 on the eukaryotic ribosome by cryo-EM , 2004, Nature Structural &Molecular Biology.
[20] A. Hinnebusch,et al. Molecular Mechanism of Scanning and Start Codon Selection in Eukaryotes , 2011, Microbiology and Molecular Reviews.
[21] T. Earnest,et al. Crystal Structure of the Ribosome at 5.5 Å Resolution , 2001, Science.
[22] Sergey V. Melnikov,et al. The structure of the eukaryotic ribosome at 3.0 angstrom resolution. , 2011 .
[23] H. Kiyokawa,et al. Eukaryotic initiation factor 6 is rate-limiting in translation, growth and transformation , 2008, Nature.
[24] J. Frank,et al. Eukaryotic initiation factor 3 does not prevent association through physical blockage of the ribosomal subunit-subunit interface. , 1992, Journal of molecular biology.
[25] James B. Munro,et al. Structure and dynamics of the mammalian ribosomal pretranslocation complex. , 2011, Molecular cell.
[26] Johannes Söding,et al. Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-Å resolution , 2010, Proceedings of the National Academy of Sciences.
[27] Andrej Sali,et al. Comprehensive molecular structure of the eukaryotic ribosome. , 2009, Structure.
[28] Michael Costanzo,et al. The Shwachman-Bodian-Diamond syndrome protein mediates translational activation of ribosomes in yeast , 2007, Nature Genetics.
[29] A. Hachimori,et al. Replacement of L7/L12.L10 Protein Complex in Escherichia coli Ribosomes with the Eukaryotic Counterpart Changes the Specificity of Elongation Factor Binding* , 1999, The Journal of Biological Chemistry.
[30] M. Topf,et al. Mechanism of eIF6-mediated Inhibition of Ribosomal Subunit Joining* , 2010, The Journal of Biological Chemistry.
[31] A. Hinnebusch,et al. Domains of eIF1A that mediate binding to eIF2, eIF3 and eIF5B and promote ternary complex recruitment in vivo , 2003, The EMBO journal.
[32] Roland Beckmann,et al. The DARC site: a database of aligned ribosomal complexes , 2011, Nucleic Acids Res..
[33] C. Vonrhein,et al. Structure of the 30S ribosomal subunit , 2000, Nature.
[34] Joachim Frank,et al. Locking and Unlocking of Ribosomal Motions , 2003, Cell.
[35] G. Wagner,et al. Position of eukaryotic translation initiation factor eIF1A on the 40S ribosomal subunit mapped by directed hydroxyl radical probing , 2009, Nucleic acids research.
[36] V. Ramakrishnan,et al. First published online as a Review in Advance on February 25, 2005 STRUCTURAL INSIGHTS INTO TRANSLATIONAL , 2022 .
[37] R. Gutell,et al. Supplemental Data Structure of the Mammalian 80 S Ribosome at 8 . 7 Å Resolution , 2008 .
[38] R. Parker,et al. Structure of the Dom34–Hbs1 complex and implications for no-go decay , 2010, Nature Structural &Molecular Biology.
[39] S. Marzi,et al. The role of mRNA structure in translational control in bacteria , 2009, RNA biology.
[40] F. Schluenzen,et al. Structure of Functionally Activated Small Ribosomal Subunit , 2000 .
[41] T. Steitz,et al. A structural view on the mechanism of the ribosome-catalyzed peptide bond formation. , 2009, Biochimica et biophysica acta.
[42] E. Hurt,et al. The nucle(ol)ar Tif6p and Efl1p are required for a late cytoplasmic step of ribosome synthesis. , 2001, Molecular cell.
[43] J. Holton,et al. Structures of the Bacterial Ribosome at 3.5 Å Resolution , 2005, Science.
[44] M van Heel,et al. The 80S rat liver ribosome at 25 A resolution by electron cryomicroscopy and angular reconstitution. , 1998, Structure.
[45] A. Hinnebusch,et al. The yeast eIF3 subunits TIF32/a, NIP1/c, and eIF5 make critical connections with the 40S ribosome in vivo. , 2003, Genes & development.
[46] V. Ramakrishnan,et al. Crystal structure of the 30 S ribosomal subunit from Thermus thermophilus: structure of the proteins and their interactions with 16 S RNA. , 2002, Journal of molecular biology.
[47] Tsutomu Suzuki,et al. Ribosomal RNAs are tolerant toward genetic insertions: evolutionary origin of the expansion segments , 2008, Nucleic acids research.
[48] Shashi Bhushan,et al. SecM-Stalled Ribosomes Adopt an Altered Geometry at the Peptidyl Transferase Center , 2011, PLoS biology.
[49] Klaus Schulten,et al. Structure of Monomeric Yeast and Mammalian Sec61 Complexes Interacting with the Translating Ribosome , 2009, Science.
[50] M. Miyamoto,et al. The crystal structure of eEF1A refines the functional predictions of an evolutionary analysis of rate changes among elongation factors. , 2002, Molecular biology and evolution.
[51] J. Doudna,et al. The j-Subunit of Human Translation Initiation Factor eIF3 Is Required for the Stable Binding of eIF3 and Its Subcomplexes to 40 S Ribosomal Subunits in Vitro* , 2004, Journal of Biological Chemistry.
[52] M. Yao,et al. An rRNA variable region has an evolutionarily conserved essential role despite sequence divergence , 1994, Molecular and cellular biology.
[53] M. Selmer,et al. Structure of the 70S Ribosome Complexed with mRNA and tRNA , 2006, Science.
[54] E. Villa,et al. Structure of the no-go mRNA decay complex Dom34–Hbs1 bound to a stalled 80S ribosome , 2011, Nature Structural &Molecular Biology.
[55] Anke Mulder,et al. Cryo-EM Visualization of a Viral Internal Ribosome Entry Site Bound to Human Ribosomes The IRES Functions as an RNA-Based Translation Factor , 2004, Cell.
[56] M. Yusupov,et al. The fidelity of translation initiation: reciprocal activities of eIF1, IF3 and YciH , 2006, The EMBO journal.
[57] D. Barford,et al. The Crystal Structure of Human Eukaryotic Release Factor eRF1—Mechanism of Stop Codon Recognition and Peptidyl-tRNA Hydrolysis , 2000, Cell.
[58] T. Steitz,et al. The complete atomic structure of the large ribosomal subunit at 2.4 A resolution. , 2000, Science.
[59] Marco Gartmann,et al. α-Helical nascent polypeptide chains visualized within distinct regions of the ribosomal exit tunnel , 2010, Nature Structural &Molecular Biology.
[60] Nan Yu,et al. The Comparative RNA Web (CRW) Site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs , 2002, BMC Bioinformatics.
[61] Frank Schluenzen,et al. High Resolution Structure of the Large Ribosomal Subunit from a Mesophilic Eubacterium , 2001, Cell.
[62] Lev L. Kisselev,et al. In Vitro Reconstitution of Eukaryotic Translation Reveals Cooperativity between Release Factors eRF1 and eRF3 , 2006, Cell.
[63] T. Rapoport,et al. A comparison of the yeast and rabbit 80 S ribosome reveals the topology of the nascent chain exit tunnel, inter-subunit bridges and mammalian rRNA expansion segments. , 2000, Journal of molecular biology.
[64] A. Hinnebusch,et al. The eIF1A C‐terminal domain promotes initiation complex assembly, scanning and AUG selection in vivo , 2005, The EMBO journal.
[65] E. Hurt,et al. Linear ubiquitin fusion to Rps31 and its subsequent cleavage are required for the efficient production and functional integrity of 40S ribosomal subunits , 2009, Molecular microbiology.
[66] Daniel N. Wilson,et al. Localization of eukaryote-specific ribosomal proteins in a 5.5-Å cryo-EM map of the 80S eukaryotic ribosome , 2010, Proceedings of the National Academy of Sciences.
[67] T. Steitz,et al. The roles of ribosomal proteins in the structure assembly, and evolution of the large ribosomal subunit. , 2004, Journal of molecular biology.
[68] Sung-Hou Kim,et al. Structural analyses of peptide release factor 1 from Thermotoga maritima reveal domain flexibility required for its interaction with the ribosome. , 2004, Journal of molecular biology.
[69] A. Hinnebusch,et al. Regulatory elements in eIF1A control the fidelity of start codon selection by modulating tRNA(i)(Met) binding to the ribosome. , 2010, Genes & development.
[70] Jianli Lu,et al. Electrostatics in the ribosomal tunnel modulate chain elongation rates. , 2008, Journal of molecular biology.
[71] H. Bielka,et al. Eukaryotic initiation factors eIF-2 and eIF-3: interactions, structure and localization in ribosomal initiation complexes. , 1991, Biochimie.
[72] T. Steitz,et al. Structures of deacylated tRNA mimics bound to the E site of the large ribosomal subunit. , 2003, RNA.
[73] M. Pool. A trans-membrane segment inside the ribosome exit tunnel triggers RAMP4 recruitment to the Sec61p translocase , 2009, The Journal of cell biology.
[74] A. Hinnebusch,et al. eIF1 controls multiple steps in start codon recognition during eukaryotic translation initiation. , 2009, Journal of molecular biology.
[75] Narayanan Eswar,et al. Structure of the 80S Ribosome from Saccharomyces cerevisiae—tRNA-Ribosome and Subunit-Subunit Interactions , 2001, Cell.
[76] J. Frank,et al. Solution Structure of the E. coli 70S Ribosome at 11.5 Å Resolution , 2000, Cell.
[77] E. Nogales,et al. Structural Roles for Human Translation Factor eIF3 in Initiation of Protein Synthesis , 2005, Science.
[78] Eric Westhof,et al. Structure of the ribosome-bound cricket paralysis virus IRES RNA , 2006, Nature Structural &Molecular Biology.
[79] M. Valle,et al. The Cryo-EM Structure of a Complete 30S Translation Initiation Complex from Escherichia coli , 2011, PLoS biology.
[80] Peter J McCormick,et al. Nascent Membrane and Secretory Proteins Differ in FRET-Detected Folding Far inside the Ribosome and in Their Exposure to Ribosomal Proteins , 2004, Cell.
[81] Klaus Schulten,et al. Structural Insight into Nascent Polypeptide Chain–Mediated Translational Stalling , 2009, Science.
[82] T. Steitz,et al. The structural basis of ribosome activity in peptide bond synthesis. , 2000, Science.
[83] Daniel N. Wilson,et al. On the specificity of antibiotics targeting the large ribosomal subunit , 2011, Annals of the New York Academy of Sciences.
[84] Olivier Poch,et al. Comparative analysis of ribosomal proteins in complete genomes: an example of reductive evolution at the domain scale. , 2002, Nucleic acids research.
[85] K. Martin,et al. Spatially restricting gene expression by local translation at synapses , 2010, Trends in Neurosciences.
[86] M. Rodnina,et al. Distinct functions of elongation factor G in ribosome recycling and translocation. , 2009, RNA.
[87] K. Nierhaus,et al. The Elongation Factor 3 Unique in Higher Fungi and Essential for Protein Biosynthesis Is an E Site Factor (*) , 1995, The Journal of Biological Chemistry.
[88] Joachim Frank,et al. Structure of the signal recognition particle interacting with the elongation-arrested ribosome , 2004, Nature.
[89] J. Doudna,et al. eIF3j is located in the decoding center of the human 40S ribosomal subunit. , 2007, Molecular cell.
[90] Joachim Frank,et al. Visualization of the eEF2-80S ribosome transition-state complex by cryo-electron microscopy. , 2008, Journal of molecular biology.
[91] M. Yusupov,et al. Crystal Structure of the Eukaryotic Ribosome , 2010, Science.
[92] S. Rospert,et al. A signal-anchor sequence stimulates signal recognition particle binding to ribosomes from inside the exit tunnel , 2009, Proceedings of the National Academy of Sciences.
[93] R. E. Luna,et al. Eukaryotic Initiation Factor (eIF) 1 Carries Two Distinct eIF5-binding Faces Important for Multifactor Assembly and AUG Selection* , 2008, Journal of Biological Chemistry.
[94] Daniel N. Wilson,et al. Structural basis for translational stalling by human cytomegalovirus and fungal arginine attenuator peptide. , 2010, Molecular cell.
[95] O. Meyuhas. Physiological roles of ribosomal protein S6: one of its kind. , 2008, International review of cell and molecular biology.
[96] P. Londei,et al. Begin at the beginning: evolution of translational initiation. , 2009, Research in microbiology.
[97] H. Song,et al. Structural studies of elongation and release factors , 2008, Cellular and Molecular Life Sciences.
[98] S. Grosso,et al. Translational control by 80S formation and 60S availability: The central role of eIF6, a rate limiting factor in cell cycle progression and tumorigenesis , 2011, Cell cycle.
[99] N. Ban,et al. Crystal Structure of the Eukaryotic 60S Ribosomal Subunit in Complex with Initiation Factor 6 , 2011, Science.
[100] Thomas Becker,et al. Following the signal sequence from ribosomal tunnel exit to signal recognition particle , 2006, Nature.
[101] E. Dabbs,et al. Translation Elongation by a Hybrid Ribosome in Which Proteins at the GTPase Center of the Escherichia coli Ribosome Are Replaced with Rat Counterparts* , 2002, The Journal of Biological Chemistry.
[102] Joachim Frank,et al. Structures of modified eEF2·80S ribosome complexes reveal the role of GTP hydrolysis in translocation , 2007, The EMBO journal.
[103] M. Yusupov,et al. Structural rearrangements of the ribosome at the tRNA proofreading step , 2010, Nature Structural &Molecular Biology.
[104] M. Ehrenberg,et al. Regulatory Nascent Peptides in the Ribosomal Tunnel , 2002, Cell.
[105] F. Schluenzen,et al. Structure of Functionally Activated Small Ribosomal Subunit at 3.3 Å Resolution , 2000, Cell.
[106] V. Ramakrishnan,et al. Insights into substrate stabilization from snapshots of the peptidyl transferase center of the intact 70S ribosome , 2009, Nature Structural &Molecular Biology.
[107] S. Baserga,et al. When ribosomes go bad: diseases of ribosome biogenesis. , 2010, Molecular bioSystems.
[108] A. Hinnebusch,et al. The C-Terminal Region of Eukaryotic Translation Initiation Factor 3a (eIF3a) Promotes mRNA Recruitment, Scanning, and, Together with eIF3j and the eIF3b RNA Recognition Motif, Selection of AUG Start Codons , 2010, Molecular and Cellular Biology.
[109] M Gerstein,et al. The geometry of the ribosomal polypeptide exit tunnel. , 2006, Journal of molecular biology.
[110] A. Kelley,et al. The Mechanism for Activation of GTP Hydrolysis on the Ribosome , 2010, Science.
[111] Vincent B. Chen,et al. Structures of the Bacterial Ribosome in Classical and Hybrid States of tRNA Binding , 2011, Science.
[112] Charles Boone,et al. Uncoupling of GTP hydrolysis from eIF6 release on the ribosome causes Shwachman-Diamond syndrome. , 2011, Genes & development.
[113] Raghuvir N. Sengupta,et al. The mechanism of peptidyl transfer catalysis by the ribosome. , 2011, Annual review of biochemistry.
[114] Narayanan Eswar,et al. Structure of the mammalian 80S ribosome at 8.7 A resolution. , 2008, Structure.
[115] M. Hentze,et al. The role of ABCE1 in eukaryotic posttermination ribosomal recycling. , 2010, Molecular cell.
[116] Terri Goss Kinzy,et al. Two crystal structures demonstrate large conformational changes in the eukaryotic ribosomal translocase , 2003, Nature Structural Biology.
[117] J Frank,et al. Alignment of conduits for the nascent polypeptide chain in the ribosome-Sec61 complex. , 1997, Science.
[118] Thomas Becker,et al. Structure of eEF3 and the mechanism of transfer RNA release from the E-site , 2006, Nature.
[119] Jon R Lorsch,et al. N‐ and C‐terminal residues of eIF1A have opposing effects on the fidelity of start codon selection , 2007, The EMBO journal.
[120] J. Frank,et al. Regulation of eukaryotic translation by the RACK1 protein: a platform for signalling molecules on the ribosome , 2004, EMBO reports.
[121] M. Yusupov,et al. Structural aspects of messenger RNA reading frame maintenance by the ribosome , 2010, Nature Structural &Molecular Biology.
[122] Daniel N. Wilson,et al. The ribosomal tunnel as a functional environment for nascent polypeptide folding and translational stalling. , 2011, Current opinion in structural biology.
[123] A. Hinnebusch,et al. Regulation of Translation Initiation in Eukaryotes: Mechanisms and Biological Targets , 2009, Cell.
[124] M. Yusupov,et al. The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains proteins of the 40S subunit, ribosome A , 2011 .
[125] R. Ficner,et al. The iron–sulphur protein RNase L inhibitor functions in translation termination , 2010, EMBO reports.
[126] V. Ramakrishnan,et al. How mutations in tRNA distant from the anticodon affect the fidelity of decoding , 2010, Nature Structural &Molecular Biology.
[127] Stephan Wickles,et al. Structural basis of highly conserved ribosome recycling in eukaryotes and archaea , 2012, Nature.
[128] Wolfgang Wintermeyer,et al. Signal sequence–independent membrane targeting of ribosomes containing short nascent peptides within the exit tunnel , 2008, Nature Structural &Molecular Biology.
[129] M. Ehrenberg,et al. A Posttermination Ribosomal Complex Is the Guanine Nucleotide Exchange Factor for Peptide Release Factor RF3 , 2001, Cell.
[130] A. Sali,et al. Architecture of the Protein-Conducting Channel Associated with the Translating 80S Ribosome , 2001, Cell.
[131] C. Hellen,et al. Release of initiation factors from 48S complexes during ribosomal subunit joining and the link between establishment of codon-anticodon base-pairing and hydrolysis of eIF2-bound GTP. , 2004, Genes & development.
[132] J. Ballesta,et al. Domain movements of elongation factor eEF2 and the eukaryotic 80S ribosome facilitate tRNA translocation , 2004, The EMBO journal.
[133] J Frank,et al. Hepatitis C Virus IRES RNA-Induced Changes in the Conformation of the 40S Ribosomal Subunit , 2001, Science.
[134] Mikkel A. Algire,et al. The eukaryotic translation initiation factors eIF1 and eIF1A induce an open conformation of the 40S ribosome. , 2007, Molecular cell.