Can a Single Brain Region Predict a Disorder?

We perform prediction of diverse disorders (cocaine use, schizophrenia and Alzheimer's disease) in unseen subjects from brain functional magnetic resonance imaging. First, we show that for multisubject prediction of simple cognitive states (e.g., motor versus calculation and reading), voxels-as-features methods produce clusters that are similar for different leave-one-subject-out folds; while for group classification (e.g., cocaine addicted versus control subjects), voxels are scattered and less stable. Therefore, we chose to use a single region per experimental condition and a majority vote classifier. Interestingly, our method outperforms state-of-the-art techniques. Our method can integrate multiple experimental conditions and successfully predict disorders in unseen subjects (leave-one-subject-out generalization accuracy: 89.3% and 90.9% for cocaine use, 96.4% for schizophrenia and 81.5% for Alzheimer's disease). Our experimental results not only span diverse disorders, but also different experimental designs (block design and event related tasks), facilities, magnetic fields (1.5T, 3T, 4T) and speed of acquisition (interscan interval from 1600 to 3500 ms). We further argue that our method produces a meaningful low-dimensional representation that retains discriminability.

[1]  B. Thirion,et al.  Discriminating Between Populations of Subjects Based on FMRI Data Using Sparse Features Selection and SRDA Classifier , 2009, NeuroImage.

[2]  Tom M. Mitchell,et al.  Learning to Decode Cognitive States from Brain Images , 2004, Machine Learning.

[3]  Fillia Makedon,et al.  Patient Classification of fMRI Activation Maps , 2003, MICCAI.

[4]  R. Frances Is Decreased Prefrontal Cortical Sensitivity to Monetary Reward Associated With Impaired Motivation and Self-Control in Cocaine Addiction? , 2008 .

[5]  B. Thirion,et al.  Fast reproducible identification and large-scale databasing of individual functional cognitive networks , 2007, BMC Neuroscience.

[6]  G. Leuba,et al.  Visual cortex in Alzheimer's disease: Occurencee of neuronal death and glial proliferation, and correlation with pathological hallmarks , 1994, Neurobiology of Aging.

[7]  Rainer Goebel,et al.  Combining multivariate voxel selection and support vector machines for mapping and classification of fMRI spatial patterns , 2008, NeuroImage.

[8]  Karl J. Friston,et al.  Statistical parametric maps in functional imaging: A general linear approach , 1994 .

[9]  Tom M. Mitchell,et al.  Machine learning classifiers and fMRI: A tutorial overview , 2009, NeuroImage.

[10]  Janaina Mourão Miranda,et al.  Classifying brain states and determining the discriminating activation patterns: Support Vector Machine on functional MRI data , 2005, NeuroImage.

[11]  Stephen C. Strother,et al.  Support vector machines for temporal classification of block design fMRI data , 2005, NeuroImage.

[12]  R. Savoy Functional Magnetic Resonance Imaging (fMRI) , 2002 .

[13]  P. Goldman-Rakic,et al.  Abnormally high neuronal density in the schizophrenic cortex. A morphometric analysis of prefrontal area 9 and occipital area 17. , 1995, Archives of general psychiatry.

[14]  Dinggang Shen,et al.  Detecting Cognitive States from fMRI Images by Machine Learning and Multivariate Classification , 2006, 2006 Conference on Computer Vision and Pattern Recognition Workshop (CVPRW'06).

[15]  Colleen A. Hanlon,et al.  Loss of laterality in chronic cocaine users: An fMRI investigation of sensorimotor control , 2010, Psychiatry Research: Neuroimaging.

[16]  M. Brammer,et al.  Pattern Classification of Sad Facial Processing: Toward the Development of Neurobiological Markers in Depression , 2008, Biological Psychiatry.

[17]  Yaroslav O. Halchenko,et al.  Brain Reading Using Full Brain Support Vector Machines for Object Recognition: There Is No Face Identification Area , 2008, Neural Computation.

[18]  Yasuhito Sawahata,et al.  Spatial smoothing hurts localization but not information: Pitfalls for brain mappers , 2010, NeuroImage.

[19]  Jason Weston,et al.  Gene Selection for Cancer Classification using Support Vector Machines , 2002, Machine Learning.

[20]  T. Poggio,et al.  STABILITY RESULTS IN LEARNING THEORY , 2005 .

[21]  Sayan Mukherjee,et al.  Learning theory: stability is sufficient for generalization and necessary and sufficient for consistency of empirical risk minimization , 2006, Adv. Comput. Math..

[22]  André Elisseeff,et al.  Stability and Generalization , 2002, J. Mach. Learn. Res..

[23]  Dimitris Samaras,et al.  Simple fully automated group classification on brain fMRI , 2010, 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

[24]  J. Morris,et al.  Functional Brain Imaging of Young, Nondemented, and Demented Older Adults , 2000, Journal of Cognitive Neuroscience.

[25]  Manel Martínez-Ramón,et al.  fMRI pattern classification using neuroanatomically constrained boosting , 2006, NeuroImage.

[26]  Rita Z. Goldstein,et al.  Anterior cingulate cortex hypoactivations to an emotionally salient task in cocaine addiction , 2009, Proceedings of the National Academy of Sciences.

[27]  Kaustubh Supekar,et al.  Sparse logistic regression for whole-brain classification of fMRI data , 2010, NeuroImage.

[28]  P Golland,et al.  Prediction of Successful Memory Encoding from fMRI Data. , 2008, Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention.

[29]  Vince D. Calhoun,et al.  Automatic Bayesian Classification of Healthy Controls, Bipolar Disorder, and Schizophrenia Using Intrinsic Connectivity Maps From fMRI Data , 2010, IEEE Transactions on Biomedical Engineering.

[30]  Bertrand Thirion,et al.  Mutual information-based feature selection enhances fMRI brain activity classification , 2008, 2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

[31]  Rainer Goebel,et al.  Information-based functional brain mapping. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[32]  Piotr Bogorodzki,et al.  Structural group classification technique based on regional fMRI BOLD responses , 2005, IEEE Transactions on Medical Imaging.

[33]  Jong-Hwan Lee,et al.  Automated classification of fMRI data employing trial-based imagery tasks , 2009, Medical Image Anal..

[34]  David D. Cox,et al.  Functional magnetic resonance imaging (fMRI) “brain reading”: detecting and classifying distributed patterns of fMRI activity in human visual cortex , 2003, NeuroImage.

[35]  Dinggang Shen,et al.  Classifying spatial patterns of brain activity with machine learning methods: Application to lie detection , 2005, NeuroImage.

[36]  Jing-Huei Lee,et al.  Abnormal brain activation to visual stimulation in cocaine abusers. , 2003, Life sciences.

[37]  Ohad Shamir,et al.  Learnability, Stability and Uniform Convergence , 2010, J. Mach. Learn. Res..

[38]  Alan L. Yuille,et al.  Classification of spatially unaligned fMRI scans , 2010, NeuroImage.

[39]  Tom M. Mitchell,et al.  Training fMRI Classifiers to Discriminate Cognitive States across Multiple Subjects , 2003, NIPS.

[40]  Gregory A. Miller,et al.  Classification of functional brain images with a spatio-temporal dissimilarity map , 2006, NeuroImage.

[41]  Vince D. Calhoun,et al.  A projection pursuit algorithm to classify individuals using fMRI data: Application to schizophrenia , 2008, NeuroImage.

[42]  Dimitrios I. Fotiadis,et al.  A six stage approach for the diagnosis of the Alzheimer's disease based on fMRI data , 2010, J. Biomed. Informatics.

[43]  W. K. Simmons,et al.  Circular analysis in systems neuroscience: the dangers of double dipping , 2009, Nature Neuroscience.

[44]  Murat Yücel,et al.  Task-induced deactivation of midline cortical regions in schizophrenia assessed with fMRI , 2007, Schizophrenia Research.

[45]  Partha Niyogi,et al.  Almost-everywhere Algorithmic Stability and Generalization Error , 2002, UAI.

[46]  C. Keysers,et al.  An introduction to anatomical ROI-based fMRI classification analysis , 2009, Brain Research.