Protein Flexibility Facilitates Quaternary Structure Assembly and Evolution
暂无分享,去创建一个
[1] S. Teichmann,et al. Probing the diverse landscape of protein flexibility and binding. , 2012, Current opinion in structural biology.
[2] R. Nussinov,et al. Extended disordered proteins: targeting function with less scaffold. , 2003, Trends in biochemical sciences.
[3] C. Chothia,et al. The atomic structure of protein-protein recognition sites. , 1999, Journal of molecular biology.
[4] M. Lynch. Evolutionary diversification of the multimeric states of proteins , 2013, Proceedings of the National Academy of Sciences.
[5] Yongqi Huang,et al. Three‐dimensional domain swapping in the protein structure space , 2012, Proteins.
[6] David Baker,et al. Emergence of symmetry in homooligomeric biological assemblies , 2008, Proceedings of the National Academy of Sciences.
[7] Charlotte M. Deane,et al. What Evidence Is There for the Homology of Protein-Protein Interactions? , 2012, PLoS Comput. Biol..
[8] R. Russell,et al. The relationship between sequence and interaction divergence in proteins. , 2003, Journal of molecular biology.
[9] J. Changeux,et al. ON THE NATURE OF ALLOSTERIC TRANSITIONS: A PLAUSIBLE MODEL. , 1965, Journal of molecular biology.
[10] T L Blundell,et al. Symmetry, stability, and dynamics of multidomain and multicomponent protein systems. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[11] Sarah A. Teichmann,et al. Relative Solvent Accessible Surface Area Predicts Protein Conformational Changes upon Binding , 2011, Structure.
[12] C. Chothia,et al. Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure. , 2001, Journal of molecular biology.
[13] Sarah A Teichmann,et al. Evolution of protein complexes by duplication of homomeric interactions , 2007, Genome Biology.
[14] A. Elofsson,et al. What properties characterize the hub proteins of the protein-protein interaction network of Saccharomyces cerevisiae? , 2006, Genome Biology.
[15] S. Teichmann,et al. Protein Complexes Are under Evolutionary Selection to Assemble via Ordered Pathways , 2013, Cell.
[16] P. Tompa,et al. The pairwise energy content estimated from amino acid composition discriminates between folded and intrinsically unstructured proteins. , 2005, Journal of molecular biology.
[17] Damian Szklarczyk,et al. The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored , 2010, Nucleic Acids Res..
[18] Christopher J. Oldfield,et al. Exploring the binding diversity of intrinsically disordered proteins involved in one‐to‐many binding , 2013, Protein science : a publication of the Protein Society.
[19] Gaston H. Gonnet,et al. OMA 2011: orthology inference among 1000 complete genomes , 2010, Nucleic Acids Res..
[20] P. Argos,et al. Knowledge‐based protein secondary structure assignment , 1995, Proteins.
[21] M. Gerstein,et al. Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs. , 2004, Genome research.
[22] Ruth Nussinov,et al. Analysis of ordered and disordered protein complexes reveals structural features discriminating between stable and unstable monomers. , 2004, Journal of molecular biology.
[23] Albert J. Vilella,et al. EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates. , 2009, Genome research.
[24] E I Shakhnovich,et al. Structural similarity enhances interaction propensity of proteins. , 2006, Journal of molecular biology.
[25] A. Sali,et al. The molecular sociology of the cell , 2007, Nature.
[26] Michael Lynch,et al. The evolution of multimeric protein assemblages. , 2012, Molecular biology and evolution.
[27] Marc S. Cortese,et al. Flexible nets , 2005, The FEBS journal.
[28] C. Chothia. Structural invariants in protein folding , 1975, Nature.
[29] M. Vidal,et al. Identification of potential interaction networks using sequence-based searches for conserved protein-protein interactions or "interologs". , 2001, Genome research.
[30] Philip M. Kim,et al. The role of disorder in interaction networks: a structural analysis , 2008, Molecular systems biology.
[31] M. Albà,et al. Inverse relationship between evolutionary rate and age of mammalian genes. , 2005, Molecular biology and evolution.
[32] S. Stickel,et al. Monophyletic origins of the metazoa: an evolutionary link with fungi , 1993, Science.
[33] Pedro Beltrão,et al. Specificity and Evolvability in Eukaryotic Protein Interaction Networks , 2007, PLoS Comput. Biol..
[34] Joël Janin,et al. Protein flexibility, not disorder, is intrinsic to molecular recognition , 2013, F1000 biology reports.
[35] Lucy J. Colwell,et al. The emergence of protein complexes: quaternary structure, dynamics and allostery. Colworth Medal Lecture. , 2012, Biochemical Society transactions.
[36] Guilhem Faure,et al. Versatility and Invariance in the Evolution of Homologous Heteromeric Interfaces , 2012, PLoS Comput. Biol..
[37] Benjamin A. Shoemaker,et al. Evolution of protein binding modes in homooligomers. , 2010, Journal of molecular biology.
[38] Cyrus Chothia,et al. SUPERFAMILY—sophisticated comparative genomics, data mining, visualization and phylogeny , 2008, Nucleic Acids Res..
[39] S. Teichmann,et al. Parallel dynamics and evolution: Protein conformational fluctuations and assembly reflect evolutionary changes in sequence and structure , 2014, BioEssays : news and reviews in molecular, cellular and developmental biology.
[40] M. Sternberg,et al. Insights into protein flexibility: The relationship between normal modes and conformational change upon protein–protein docking , 2008, Proceedings of the National Academy of Sciences.
[41] J. Janin,et al. Protein–protein interaction and quaternary structure , 2008, Quarterly Reviews of Biophysics.
[42] J. Janin,et al. Reassessing buried surface areas in protein–protein complexes , 2013, Protein science : a publication of the Protein Society.
[43] R. Nussinov,et al. The role of dynamic conformational ensembles in biomolecular recognition. , 2009, Nature chemical biology.
[44] Haruki Nakamura,et al. Disordered domains and high surface charge confer hubs with the ability to interact with multiple proteins in interaction networks , 2006, FEBS letters.
[45] A J Olson,et al. Structural symmetry and protein function. , 2000, Annual review of biophysics and biomolecular structure.
[46] S. Teichmann,et al. Assembly reflects evolution of protein complexes , 2008, Nature.
[47] Peter Tompa,et al. Structural disorder promotes assembly of protein complexes , 2007, BMC Structural Biology.
[48] Emmanuel D Levy,et al. PiQSi: protein quaternary structure investigation. , 2007, Structure.
[49] István Simon,et al. Malleable Machines in Transcription Regulation: The Mediator Complex , 2008, PLoS Comput. Biol..
[50] C. Chothia,et al. Evolution of oligomeric state through geometric coupling of protein interfaces , 2012, Proceedings of the National Academy of Sciences.
[51] K. Namba. Roles of partly unfolded conformations in macromolecular self‐assembly , 2001, Genes to cells : devoted to molecular & cellular mechanisms.
[52] S. Teichmann,et al. The Role of Salt Bridges, Charge Density, and Subunit Flexibility in Determining Disassembly Routes of Protein Complexes , 2013, Structure.
[53] Sarah A. Teichmann,et al. 3D Complex: A Structural Classification of Protein Complexes , 2006, PLoS Comput. Biol..
[54] C. Landry,et al. An in Vivo Map of the Yeast Protein Interactome , 2008, Science.
[55] J. Marsh. Buried and accessible surface area control intrinsic protein flexibility. , 2013, Journal of molecular biology.
[56] P. Sparén,et al. Efficiency of organised and opportunistic cytological screening for cancer in situ of the cervix , 1995, British Journal of Cancer.
[57] D. Tautz,et al. An evolutionary analysis of orphan genes in Drosophila. , 2003, Genome research.
[58] Ariel Fernández,et al. Nonadaptive origins of interactome complexity , 2011, Nature.
[59] Andrei L. Turinsky,et al. A Census of Human Soluble Protein Complexes , 2012, Cell.
[60] E. Shakhnovich,et al. Soluble oligomerization provides a beneficial fitness effect on destabilizing mutations , 2011, Proceedings of the National Academy of Sciences.
[61] Cyrus Chothia,et al. The accessible surface area and stability of oligomeric proteins , 1987, Nature.
[62] Berend Snel,et al. Protein Complex Evolution Does Not Involve Extensive Network Rewiring , 2008, PLoS Comput. Biol..