Low‐level Analysis of Microarray Experiments

2 Visualization and exploration of the raw data 5 2.1 Image analysis . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 5 2.2 Dynamic range and spatial effects . . . . . . . . . . . . . . . . . . . . . . . . . 6 2.3 Scatterplot . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 8 2.4 Batch effects . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 9 2.5 Along chromosome plots . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 13 2.6 Sensitivity and specificity of probes . . . . . . . . . . . . . . . . . . . . . . . . 14

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