Network estimation in State Space Models with L1-regularization constraint
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Ernst Wit | Anani Lotsi | E. Wit | A. Lotsi
[1] A. Willsky,et al. Latent variable graphical model selection via convex optimization , 2010 .
[2] P. Green. On Use of the EM Algorithm for Penalized Likelihood Estimation , 1990 .
[3] L. Fahrmeir,et al. Penalized likelihood smoothing in robust state space models , 1999 .
[4] João Ricardo Sato,et al. Modeling gene expression regulatory networks with the sparse vector autoregressive model , 2007, BMC Systems Biology.
[5] H. Zou,et al. Regularization and variable selection via the elastic net , 2005 .
[6] Nozer D. Singpurwalla,et al. Understanding the Kalman Filter , 1983 .
[7] Walter Zucchini,et al. Model Selection , 2011, International Encyclopedia of Statistical Science.
[8] Jiguo Cao,et al. Estimating dynamic models for gene regulation networks , 2008, Bioinform..
[9] Cheng-Yan Kao,et al. A stochastic differential equation model for quantifying transcriptional regulatory network in Saccharomyces cerevisiae , 2005, Bioinform..
[10] Charles R. Johnson,et al. Matrix analysis , 1985, Statistical Inference for Engineers and Data Scientists.
[11] A. Doucet,et al. Smoothing algorithms for state–space models , 2010 .
[12] Ernst Wit,et al. Bayesian inference for the MAPK/ERK pathway by considering the dependency of the kinetic parameters , 2008 .
[13] Zoubin Ghahramani,et al. A Bayesian approach to reconstructing genetic regulatory networks with hidden factors , 2005, Bioinform..
[14] R. Shumway,et al. AN APPROACH TO TIME SERIES SMOOTHING AND FORECASTING USING THE EM ALGORITHM , 1982 .
[15] Parameter Estimation for Linear Dynamical SystemsZoubin , 1996 .
[16] Zoubin Ghahramani,et al. Modeling T-cell activation using gene expression profiling and state-space models , 2004, Bioinform..
[17] Yang Jing. L1 Regularization Path Algorithm for Generalized Linear Models , 2008 .
[18] R. Tibshirani. Regression Shrinkage and Selection via the Lasso , 1996 .
[19] V. Vinciotti,et al. Statistical Reconstruction of Transcription Factor Activity Using Michaelis–Menten Kinetics , 2007, Biometrics.
[20] V. Vinciotti,et al. Reconstructing repressor protein levels from expression of gene targets in Escherichia coli , 2006, Proceedings of the National Academy of Sciences.
[21] Robert H. Shumway,et al. Dynamic Mixed Models for Irregularly Observed Time Series , 2000 .
[22] L. Fahrmeir,et al. Penalized likelihood estimation and iterative Kalman smoothing for non-Gaussian dynamic regression models , 1997 .
[23] Zoubin Ghahramani,et al. Modeling genetic regulatory networks using gene expression profiling and state space models , 2005 .
[24] Nicolas Brunel,et al. Estimating parameters and hidden variables in non-linear state-space models based on ODEs for biological networks inference , 2007, Bioinform..
[25] Fentaw Abegaz,et al. Sparse time series chain graphical models for reconstructing genetic networks. , 2013, Biostatistics.
[26] James M. Bower,et al. Computational modeling of genetic and biochemical networks , 2001 .
[27] Fang-Xiang Wu,et al. Modeling Gene Expression from Microarray Expression Data with State-Space Equations , 2003, Pacific Symposium on Biocomputing.
[28] H. Akaike. A new look at the statistical model identification , 1974 .
[29] C. R. McClung,et al. The Arabidopsis thaliana Clock , 2004, Journal of biological rhythms.
[30] Wenjiang J. Fu. Penalized Regressions: The Bridge versus the Lasso , 1998 .
[31] G. Schwarz. Estimating the Dimension of a Model , 1978 .
[32] David R. Anderson,et al. Bayesian Methods in Cosmology: Model selection and multi-model inference , 2009 .
[33] Rebecca W Doerge,et al. An Empirical Bayesian Method for Estimating Biological Networks from Temporal Microarray Data , 2010, Statistical applications in genetics and molecular biology.
[34] Patrik D'haeseleer,et al. Genetic network inference: from co-expression clustering to reverse engineering , 2000, Bioinform..
[35] David S. Stoffer. Time series analysis by state space models: J. Durbin and S. J. Koopman; Oxford University Press, Oxford, 2001, pp 253 + xvii, ISBN: 0 19 852354 8 , 2003, Autom..
[36] R. W. Doerge,et al. The KM-Algorithm Identifies Regulated Genes in Time Series Expression Data , 2009, Adv. Bioinformatics.
[37] Stuart A. Kauffman,et al. ORIGINS OF ORDER , 2019, Origins of Order.
[38] Tomoyuki Higuchi,et al. State-space approach with the maximum likelihood principle to identify the system generating time-course gene expression data of yeast , 2006, Int. J. Data Min. Bioinform..
[39] Colin L. Mallows,et al. Some Comments on Cp , 2000, Technometrics.
[40] Ernst Wit,et al. State-space modeling of dynamic genetic networks , 2013 .
[41] Jiguo Cao,et al. Parameter estimation for differential equations: a generalized smoothing approach , 2007 .
[42] Aurélien Mazurie,et al. Gene networks inference using dynamic Bayesian networks , 2003, ECCB.
[43] Korbinian Strimmer,et al. An empirical Bayes approach to inferring large-scale gene association networks , 2005, Bioinform..
[44] Jianqing Fan,et al. Variable Selection via Nonconcave Penalized Likelihood and its Oracle Properties , 2001 .
[45] Robert Tibshirani,et al. The Entire Regularization Path for the Support Vector Machine , 2004, J. Mach. Learn. Res..
[46] R. Tibshirani,et al. Sparse inverse covariance estimation with the graphical lasso. , 2008, Biostatistics.