Geometrical regularization of displacement fields for histological image registration

This article tackles the registration of 2-D biomedical images (histological sections, autoradiographs, cryosections, etc.). Our goal is to adequately match anatomical features of interest without inducing biologically improbable tissue distortions. We observe that the large variety of registration applications--3-D volume reconstruction, multimodal molecular mapping, etc.--induce a no less diverse set of requirements in terms of accuracy and robustness. In turn, these directly translate into regularization constraints on the deformation model, which should ideally be specifiable by the user. We propose an adaptive regularization approach where the rigidity constraints are informed by the registration application at hand and whose support is controlled by the geometry of the images to be registered. For each site of a sparse lattice over which a displacement field has been computed, our algorithm estimates, in a robust fashion, a rigid or affine transformation within a circular neighbourhood cut to fit the local geometry around the site. We investigate the behaviour of this technique and discuss its sensitivity to the rigidity parameter.

[1]  Grégoire Malandain,et al.  Fusion of autoradiographs with an MR volume using 2-D and 3-D linear transformations , 2004, NeuroImage.

[2]  Jean-Philippe Thirion,et al.  Image matching as a diffusion process: an analogy with Maxwell's demons , 1998, Medical Image Anal..

[3]  Xavier Pennec L'incertitude dans les problèmes de reconnaissance et de recalage - Applications en imagerie médicale et biologie moléculaire , 1996 .

[4]  Joachim Dengler Estimation of Discontinuous Displacement Vector Fields with the Minimum Description Length Criterion , 1991, DAGM-Symposium.

[5]  D. Hill,et al.  Medical image registration , 2001, Physics in medicine and biology.

[6]  Michael I. Miller,et al.  Volumetric transformation of brain anatomy , 1997, IEEE Transactions on Medical Imaging.

[7]  Nicholas Ayache,et al.  Polyrigid and Polyaffine Transformations: A New Class of Diffeomorphisms for Locally Rigid or Affine Registration , 2003, MICCAI.

[8]  Takeo Kanade,et al.  An Iterative Image Registration Technique with an Application to Stereo Vision , 1981, IJCAI.

[9]  Sébastien Ourselin,et al.  Reconstructing a 3D structure from serial histological sections , 2001, Image Vis. Comput..

[10]  Max A. Viergever,et al.  A survey of medical image registration , 1998, Medical Image Anal..

[11]  Michael Unser,et al.  Splines: a perfect fit for signal and image processing , 1999, IEEE Signal Process. Mag..

[12]  Torsten Rohlfing,et al.  Volume-preserving nonrigid registration of MR breast images using free-form deformation with an incompressibility constraint , 2003, IEEE Transactions on Medical Imaging.

[13]  Benoit M. Dawant,et al.  Adaptive free-form deformation for interpatient medical image registration , 2001, SPIE Medical Imaging.

[14]  Nicholas Ayache,et al.  Rigid, affine and locally affine registration of free-form surfaces , 1996, International Journal of Computer Vision.

[15]  Paul M. Thompson,et al.  Texture based MRI segmentation with a two-stage hybrid neural classifier , 2002, Proceedings of the 2002 International Joint Conference on Neural Networks. IJCNN'02 (Cat. No.02CH37290).

[16]  D C Barber,et al.  Registration of low resolution medical images. , 1992, Physics in medicine and biology.

[17]  Pierre Hellier,et al.  Hierarchical estimation of a dense deformation field for 3-D robust registration , 2001, IEEE Transactions on Medical Imaging.

[18]  R. Bajcsy,et al.  Elastically Deforming 3D Atlas to Match Anatomical Brain Images , 1993, Journal of computer assisted tomography.

[19]  P. Rousseeuw Least Median of Squares Regression , 1984 .

[20]  Scott T. Grafton,et al.  Automated image registration: I. General methods and intrasubject, intramodality validation. , 1998, Journal of computer assisted tomography.

[21]  Daniel Rueckert,et al.  Nonrigid registration using free-form deformations: application to breast MR images , 1999, IEEE Transactions on Medical Imaging.

[22]  Michael A. Unser,et al.  Multiresolution spline warping for EPI registration , 1999, Optics & Photonics.

[23]  Gary E. Christensen,et al.  Consistent Linear-Elastic Transformations for Image Matching , 1999, IPMI.

[24]  Boštjan Likar,et al.  Registration of serial transverse sections of muscle fibers. , 1999 .

[25]  Simon R. Arridge,et al.  Non-linear Registration with the Variable Viscosity Fluid Algorithm , 1999, IPMI.

[26]  Christos Davatzikos,et al.  Spatial Transformation and Registration of Brain Images Using Elastically Deformable Models , 1997, Comput. Vis. Image Underst..

[27]  Alain Pitiot,et al.  Piecewise affine registration of biological images for volume reconstruction , 2006, Medical Image Anal..

[28]  Paul Suetens,et al.  Nonrigid Image Registration Using Free-Form Deformations with a Local Rigidity Constraint , 2004, MICCAI.

[29]  Daniel Rueckert,et al.  Volume and Shape Preservation of Enhancing Lesions when Applying Non-rigid Registration to a Time Series of Contrast Enhancing MR Breast Images , 2000, MICCAI.

[30]  Nicholas Ayache,et al.  Iconic feature based nonrigid registration: the PASHA algorithm , 2003, Comput. Vis. Image Underst..