Population genomics of human gene expression

[1]  Emmanouil T Dermitzakis,et al.  From DNA to RNA to disease and back: The 'central dogma' of regulatory disease variation , 2006, Human Genomics.

[2]  D. Haussler,et al.  Ultraconserved Elements in the Human Genome , 2004, Science.

[3]  M. Daly,et al.  Genome-wide association studies for common diseases and complex traits , 2005, Nature Reviews Genetics.

[4]  Eric E Schadt,et al.  Cis-acting expression quantitative trait loci in mice. , 2005, Genome research.

[5]  Laurent Excoffier,et al.  Conserved noncoding sequences are selectively constrained and not mutation cold spots , 2006, Nature Genetics.

[6]  M. Olivier A haplotype map of the human genome , 2003, Nature.

[7]  Rachel B. Brem,et al.  Trans-acting regulatory variation in Saccharomyces cerevisiae and the role of transcription factors , 2003, Nature Genetics.

[8]  M. McCarthy,et al.  Replication of Genome-Wide Association Signals in UK Samples Reveals Risk Loci for Type 2 Diabetes , 2007, Science.

[9]  E. Dermitzakis,et al.  Polymorphisms in the low-density lipoprotein receptor-related protein 5 (LRP5) gene are associated with variation in vertebral bone mass, vertebral bone size, and stature in whites. , 2004, American journal of human genetics.

[10]  P. Stankiewicz,et al.  Genome architecture, rearrangements and genomic disorders. , 2002, Trends in genetics : TIG.

[11]  R. Redon,et al.  Relative Impact of Nucleotide and Copy Number Variation on Gene Expression Phenotypes , 2007, Science.

[12]  Andrew Thomas,et al.  The BUGS language , 2007 .

[13]  Yun Li,et al.  CFH haplotypes without the Y402H coding variant show strong association with susceptibility to age-related macular degeneration , 2006, Nature Genetics.

[14]  M. Olivier A haplotype map of the human genome. , 2003, Nature.

[15]  Klaudia Walter,et al.  Open access, freely available online PLoS BIOLOGY Highly Conserved Non-Coding Sequences Are Associated with Vertebrate Development , 2022 .

[16]  Michael C O'Donovan,et al.  Functional analysis of polymorphisms in the promoter regions of genes on 22q11 , 2004, Human mutation.

[17]  K. Grzeschik,et al.  Human GLI3 Intragenic Conserved Non-Coding Sequences Are Tissue-Specific Enhancers , 2007, PloS one.

[18]  D. Kleinjan,et al.  Long-range control of gene expression: emerging mechanisms and disruption in disease. , 2005, American journal of human genetics.

[19]  K. Huse,et al.  Sarcoidosis is associated with a truncating splice site mutation in BTNL2 , 2005, Nature Genetics.

[20]  R. Stoughton,et al.  Genetics of gene expression surveyed in maize, mouse and man , 2003, Nature.

[21]  Philippe Froguel,et al.  FCGR3B copy number variation is associated with susceptibility to systemic, but not organ-specific, autoimmunity , 2007, Nature Genetics.

[22]  Terence P. Speed,et al.  A comparison of normalization methods for high density oligonucleotide array data based on variance and bias , 2003, Bioinform..

[23]  Stefan Kammerer,et al.  Association testing by DNA pooling: An effective initial screen , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[24]  Joshua T. Burdick,et al.  Mapping determinants of human gene expression by regional and genome-wide association , 2005, Nature.

[25]  R. Mahley,et al.  Apolipoprotein E: from atherosclerosis to Alzheimer's disease and beyond. , 1999, Current opinion in lipidology.

[26]  D. Pe’er,et al.  Identifying regulatory mechanisms using individual variation reveals key role for chromatin modification , 2006, Proceedings of the National Academy of Sciences.

[27]  William Stafford Noble,et al.  Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project , 2007, Nature.

[28]  Alexandre Reymond,et al.  Evolutionary Discrimination of Mammalian Conserved Non-Genic Sequences (CNGs) , 2003, Science.

[29]  Rachel B. Brem,et al.  The landscape of genetic complexity across 5,700 gene expression traits in yeast. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[30]  E. Schadt,et al.  Genetic inheritance of gene expression in human cell lines. , 2004, American journal of human genetics.

[31]  Emmanouil T Dermitzakis,et al.  The genetics of regulatory variation in the human genome , 2005, Human Genomics.

[32]  M. Ashburner,et al.  Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.

[33]  M Z Papa,et al.  ATM haplotypes and breast cancer risk in Jewish high-risk women , 2006, British Journal of Cancer.

[34]  Emily Dimmer,et al.  The Gene Ontology Annotation (GOA) Database - An integrated resource of GO annotations to the UniProt Knowledgebase , 2003, Silico Biol..

[35]  N. Thorne,et al.  beadarray: An R Package to Analyse Illumina BeadArrays , 2006 .

[36]  S. Hunt,et al.  Genome-Wide Associations of Gene Expression Variation in Humans , 2005, PLoS genetics.

[37]  Marcia M. Nizzari,et al.  Genome-Wide Association Analysis Identifies Loci for Type 2 Diabetes and Triglyceride Levels , 2007, Science.

[38]  Julian C. Knight,et al.  Regulatory polymorphisms underlying complex disease traits , 2005, Journal of Molecular Medicine.

[39]  Natalie P. Thorne,et al.  QUALITY CONTROL AND LOW-LEVEL STATISTICAL ANALYSIS OF ILLUMINA BEADARRAYS , 2006 .

[40]  John D. Storey,et al.  Multiple Locus Linkage Analysis of Genomewide Expression in Yeast , 2005, PLoS biology.

[41]  Charlotte N. Henrichsen,et al.  Submicroscopic deletion in patients with Williams-Beuren syndrome influences expression levels of the nonhemizygous flanking genes. , 2006, American journal of human genetics.

[42]  Philippe Rigault,et al.  A novel, high-performance random array platform for quantitative gene expression profiling. , 2004, Genome research.

[43]  R. Doerge,et al.  Permutation tests for multiple loci affecting a quantitative character. , 1996, Genetics.

[44]  R. Doerge,et al.  Empirical threshold values for quantitative trait mapping. , 1994, Genetics.

[45]  Nature Genetics , 1991, Nature.