Genomics and Proteomics: A Signal Tour

[1]  A. Antoniou,et al.  Identification and location of hot spots in proteins using the short-time discrete Fourier transform , 2004, Conference Record of the Thirty-Eighth Asilomar Conference on Signals, Systems and Computers, 2004..

[2]  Gregory D. Peterson,et al.  Engineering in the biological substrate: information processing in genetic circuits , 2004, Proceedings of the IEEE.

[3]  Dimitris Anastassiou,et al.  Spectrogram Analysis of Genomes , 2004, EURASIP J. Adv. Signal Process..

[4]  P. P. Vaidyanathan,et al.  The role of signal-processing concepts in genomics and proteomics , 2004, J. Frankl. Inst..

[5]  W. Wayt Gibbs.  The unseen genome: beyond DNA. , 2003, Scientific American.

[6]  N. Lau,et al.  Censors of the genome. , 2003, Scientific American.

[7]  M. L. Simpson,et al.  Frequency domain analysis of noise in autoregulated gene circuits , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[8]  Qiang Fang,et al.  Investigation of the structural and functional relationships of oncogene proteins , 2002, Proc. IEEE.

[9]  Rocco Casagrande.  Technology against terror. , 2002, Scientific American.

[10]  G. Storz.  An Expanding Universe of Noncoding RNAs , 2002, Science.

[11]  S. Eddy.  Computational Genomics of Noncoding RNA Genes , 2002, Cell.

[12]  Robert Clarke,et al.  Iterative normalization of cDNA microarray data , 2002, IEEE Transactions on Information Technology in Biomedicine.

[13]  Denise Gorse,et al.  Wavelet transforms for the characterization and detection of repeating motifs. , 2002, Journal of molecular biology.

[14]  Biological dark matter: Newfound RNA suggests a hidden complexity inside cells , 2002 .

[15]  P.P. Vaidyanathan,et al.  Digital filters for gene prediction applications , 2002, Conference Record of the Thirty-Sixth Asilomar Conference on Signals, Systems and Computers, 2002..

[16]  P. P. Vaidyanathan,et al.  GENE AND EXON PREDICTION USING ALLPASS-BASED FILTERS , 2002 .

[17]  S. Eddy.  Non–coding RNA genes and the modern RNA world , 2001, Nature Reviews Genetics.

[18]  S. Eddy,et al.  Computational identification of noncoding RNAs in E. coli by comparative genomics , 2001, Current Biology.

[19]  Dimitris Anastassiou,et al.  Genomic signal processing , 2001, IEEE Signal Process. Mag..

[20]  S. K. Moore.  Making chips to probe genes , 2001 .

[21]  B. Wang,et al.  Correlation property of length sequences based on global structure of the complete genome. , 2000, Physical review. E, Statistical, nonlinear, and soft matter physics.

[22]  D. Botstein,et al.  Singular value decomposition for genome-wide expression data processing and modeling. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[23]  S. Pasupathy,et al.  Optimal structure for automatic processing of DNA sequences , 1999, IEEE Transactions on Biomedical Engineering.

[24]  Maria de Sousa Vieira,et al.  Statistics of DNA sequences: a low-frequency analysis. , 1999, cond-mat/9905074.

[25]  D. Botstein,et al.  Exploring the new world of the genome with DNA microarrays , 1999, Nature Genetics.

[26]  P. Goodfellow,et al.  DNA microarrays in drug discovery and development , 1999, Nature Genetics.

[27]  E. Lander.  Array of hope , 1999, Nature Genetics.

[28]  L. Adleman.  Computing with DNA , 1998 .

[29]  L.J. Thomas,et al.  Filter matrix estimation in automated DNA sequencing , 1998, IEEE Transactions on Biomedical Engineering.

[30]  Hanspeter Herzel,et al.  Interpreting correlations in biosequences , 1998 .

[31]  Christos H. Papadimitriou,et al.  Elements of the Theory of Computation , 1997, SIGA.

[32]  Simon Kasif,et al.  Computational methods in molecular biology , 1998 .

[33]  Durbin,et al.  Biological Sequence Analysis , 1998 .

[34]  S. Salzberg,et al.  Microbial gene identification using interpolated Markov models. , 1998, Nucleic acids research.

[35]  S. Tiwari,et al.  Prediction of probable genes by Fourier analysis of genomic sequences , 1997, Comput. Appl. Biosci..

[36]  Wentian Li,et al.  The Study of Correlation Structures of DNA Sequences: A Critical Review , 1997, Comput. Chem..

[37]  Frederick Jelinek,et al.  Statistical methods for speech recognition , 1997 .

[38]  Jeffrey M. Hausdorff,et al.  Multiscaled randomness: A possible source of 1/f noise in biology. , 1996, Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics.

[39]  M. Billeter,et al.  MOLMOL: a program for display and analysis of macromolecular structures. , 1996, Journal of molecular graphics.

[40]  James W. Fickett,et al.  The Gene Identification Problem: An Overview for Developers , 1995, Comput. Chem..

[41]  I. Cosic.  Macromolecular bioactivity: is it resonant interaction between macromolecules?-theory and applications , 1994, IEEE Transactions on Biomedical Engineering.

[42]  D. Haussler,et al.  A hidden Markov model that finds genes in E. coli DNA. , 1994, Nucleic acids research.

[43]  Biing-Hwang Juang,et al.  Fundamentals of speech recognition , 1993, Prentice Hall signal processing series.

[44]  P. Vaidyanathan.  Multirate Systems And Filter Banks , 1992 .

[45]  R. Voss,et al.  Evolution of long-range fractal correlations and 1/f noise in DNA base sequences. , 1992, Physical review letters.

[46]  C. Peng,et al.  Long-range correlations in nucleotide sequences , 1992, Nature.

[47]  Li,et al.  Expansion-modification systems: A model for spatial 1/f spectra. , 1991, Physical review. A, Atomic, molecular, and optical physics.

[48]  A. Brack.  The origin of life on Earth , 1991 .

[49]  Gregory W. Wornell,et al.  A Karhunen-Loève-like expansion for 1/f processes via wavelets , 1990, IEEE Trans. Inf. Theory.

[50]  Lawrence R. Rabiner,et al.  A tutorial on hidden Markov models and selected applications in speech recognition , 1989, Proc. IEEE.

[51]  Alan V. Oppenheim,et al.  Discrete-Time Signal Pro-cessing , 1989 .

[52]  S. Mitra,et al.  Interpolated finite impulse response filters , 1984 .

[53]  Bruce Alberts,et al.  Essential Cell Biology , 1983 .

[54]  A. Papoulis.  Systems and transforms with applications in optics , 1981 .

[55]  E. Trifonov,et al.  The pitch of chromatin DNA is reflected in its nucleotide sequence. , 1980, Proceedings of the National Academy of Sciences of the United States of America.

[56]  Alfred V. Aho,et al.  The Design and Analysis of Computer Algorithms , 1974 .

[57]  F. Crick,et al.  Molecular Structure of Nucleic Acids: A Structure for Deoxyribose Nucleic Acid , 1953, Nature.