Prototyping of Bacillus megaterium genetic elements through automated cell-free characterization and Bayesian modelling
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Paul S. Freemont | Nicolas Kylilis | Karen M. Polizzi | Rebekka Biedendieck | James T. MacDonald | Simon J. Moore | Sarah Weinecke | P. Freemont | J. T. MacDonald | N. Kylilis | K. Polizzi | R. Biedendieck | S. Moore | S. Weinecke | Rebekka Biedendieck | Nicolas Kylilis
[1] Aaron K. Sato,et al. A simplified and robust protocol for immunoglobulin expression in E scherichia coli cell‐free protein synthesis systems , 2015, Biotechnology progress.
[2] D. Rubin,et al. Inference from Iterative Simulation Using Multiple Sequences , 1992 .
[3] F. Meinhardt,et al. Inactivation of the major extracellular protease from Bacillus megaterium DSM319 by gene replacement , 1995, Applied Microbiology and Biotechnology.
[4] Vincent Noireaux,et al. Synthesis of 2.3 mg/ml of protein with an all Escherichia coli cell-free transcription-translation system. , 2014, Biochimie.
[5] Xia Sheng,et al. Bayesian design of synthetic biological systems , 2011, Proceedings of the National Academy of Sciences.
[6] Richard M. Murray,et al. An in silico modeling toolbox for rapid prototyping of circuits in a biomolecular “breadboard” system , 2013, 52nd IEEE Conference on Decision and Control.
[7] K. Fisher,et al. Reductive dehalogenase structure suggests a mechanism for B12-dependent dehalogenation , 2014, Nature.
[8] J. Keasling,et al. Engineering terpene biosynthesis in Streptomyces for production of the advanced biofuel precursor bisabolene. , 2015, ACS synthetic biology.
[9] T. Funatsu,et al. Kinetic study of de novo chromophore maturation of fluorescent proteins. , 2011, Analytical biochemistry.
[10] Micah J Florea,et al. Genome sequence and plasmid transformation of the model high-yield bacterial cellulose producer Gluconacetobacter hansenii ATCC 53582 , 2016, Scientific Reports.
[11] E. Green,et al. Engineering toward a bacterial “endoplasmic reticulum” for the rapid expression of immunoglobulin proteins , 2014, mAbs.
[12] T. Dieckmann,et al. Thermodynamics and kinetics of adaptive binding in the malachite green RNA aptamer. , 2013, Biochemistry.
[13] K. Fisher,et al. Epoxyqueuosine Reductase Structure Suggests a Mechanism for Cobalamin-dependent tRNA Modification , 2015, The Journal of Biological Chemistry.
[14] Yi Liu,et al. Characterizing and alleviating substrate limitations for improved in vitro ribosome construction. , 2015, ACS synthetic biology.
[15] C. J. Murray,et al. Microscale to Manufacturing Scale-up of Cell-Free Cytokine Production—A New Approach for Shortening Protein Production Development Timelines , 2011, Biotechnology and bioengineering.
[16] Dieter Jahn,et al. Genome Sequences of the Biotechnologically Important Bacillus megaterium Strains QM B1551 and DSM319 , 2011, Journal of bacteriology.
[17] W. Deckwer,et al. Plasmid system for the intracellular production and purification of affinity‐tagged proteins in Bacillus megaterium , 2007, Biotechnology and bioengineering.
[18] Reinhard Guthke,et al. Monitoring of transcriptome and proteome profiles to investigate the cellular response of E. coli towards recombinant protein expression under defined chemostat conditions. , 2008, Journal of biotechnology.
[19] Boping Zhou,et al. BMC Microbiology BioMed Central Methodology article Expression of recombinant Clostridium difficile toxin A and B in Bacillus megaterium , 2008 .
[20] C. Wittmann,et al. High yield production of extracellular recombinant levansucrase by Bacillus megaterium , 2013, Applied Microbiology and Biotechnology.
[21] Henrike Niederholtmeyer,et al. Implementation of cell-free biological networks at steady state , 2013, Proceedings of the National Academy of Sciences.
[22] Michael Eisenstein,et al. Living factories of the future , 2016, Nature.
[23] Pil Kim,et al. An engineered Escherichia coli having a high intracellular level of ATP and enhanced recombinant protein production , 2011, Applied Microbiology and Biotechnology.
[24] Vincent Noireaux,et al. Coarse-grained dynamics of protein synthesis in a cell-free system. , 2011, Physical review letters.
[25] W. Deckwer,et al. Production and secretion of recombinant Leuconostoc mesenteroides dextransucrase DsrS in Bacillus megaterium. , 2005, Biotechnology and bioengineering.
[26] W. Deckwer,et al. Bacillus megaterium—from simple soil bacterium to industrial protein production host , 2007, Applied Microbiology and Biotechnology.
[27] M. Howard,et al. Elucidation of the anaerobic pathway for the corrin component of cobalamin (vitamin B12) , 2013, Proceedings of the National Academy of Sciences.
[28] M. Jewett,et al. Mimicking the Escherichia coli cytoplasmic environment activates long‐lived and efficient cell‐free protein synthesis , 2004, Biotechnology and bioengineering.
[29] W. Hillen,et al. Quantitative analysis of gene expression with an improved green fluorescent protein. p6. , 2000, European journal of biochemistry.
[30] James J. Collins,et al. Paper-Based Synthetic Gene Networks , 2014, Cell.
[31] J. Swartz. Universal cell-free protein synthesis , 2009, Nature Biotechnology.
[32] Y. Fujita,et al. Heavy Involvement of Stringent Transcription Control Depending on the Adenine or Guanine Species of the Transcription Initiation Site in Glucose and Pyruvate Metabolism in Bacillus subtilis , 2010, Journal of bacteriology.
[33] R. Murray,et al. Gene circuit performance characterization and resource usage in a cell-free "breadboard". , 2014, ACS synthetic biology.
[34] Henrike Niederholtmeyer,et al. Rapid cell-free forward engineering of novel genetic ring oscillators , 2015, eLife.
[35] M. Howard,et al. Characterization of the Enzyme CbiH60 Involved in Anaerobic Ring Contraction of the Cobalamin (Vitamin B12) Biosynthetic Pathway* , 2012, The Journal of Biological Chemistry.
[36] Michael C Jewett,et al. An integrated cell-free metabolic platform for protein production and synthetic biology , 2008, Molecular systems biology.
[37] Jingxuan He,et al. Development of an Unnatural Amino Acid Incorporation System in the Actinobacterial Natural Product Producer Streptomyces venezuelae ATCC 15439. , 2016, ACS synthetic biology.
[38] Richard M. Murray,et al. Protocols for Implementing an Escherichia coli Based TX-TL Cell-Free Expression System for Synthetic Biology , 2013, Journal of visualized experiments : JoVE.
[39] R. Münch,et al. Polar Fixation of Plasmids during Recombinant Protein Production in Bacillus megaterium Results in Population Heterogeneity , 2015, Applied and Environmental Microbiology.
[40] Henrike Niederholtmeyer,et al. Real-time mRNA measurement during an in vitro transcription and translation reaction using binary probes. , 2013, ACS synthetic biology.
[41] T. Ueda,et al. The PURE system for the cell-free synthesis of membrane proteins , 2015, Nature Protocols.
[42] W. Hillen,et al. Molecular cloning, structure, promoters and regulatory elements for transcription of the Bacillus licheniformis encoded regulon for xylose utilization , 2004, Archives of Microbiology.
[43] Vincent Noireaux,et al. The All E. coli TX-TL Toolbox 2.0: A Platform for Cell-Free Synthetic Biology. , 2016, ACS synthetic biology.
[44] R. Murray,et al. Timing molecular motion and production with a synthetic transcriptional clock , 2011, Proceedings of the National Academy of Sciences.
[45] R. Münch,et al. A short story about a big magic bug , 2010, Bioengineered bugs.
[46] Michael C. Jewett,et al. The impact of transcriptional tuning on in vitro integrated rRNA transcription and ribosome construction , 2014, Nucleic acids research.
[47] Zachary Z. Sun,et al. Characterizing and prototyping genetic networks with cell-free transcription-translation reactions. , 2015, Methods.
[48] Michael C. Jewett,et al. High-throughput preparation methods of crude extract for robust cell-free protein synthesis , 2015, Scientific Reports.
[49] W. Hillen,et al. Inducible high-level expression of heterologous genes in Bacillus megaterium using the regulatory elements of the xylose-utilization operon , 1991, Applied Microbiology and Biotechnology.
[50] C. Thermes,et al. Cobalamin (vitamin B12) biosynthesis: identification and characterization of a Bacillus megaterium cobI operon. , 1998, The Biochemical journal.
[51] J. B. Wolf,et al. Cloning of multiple genes involved with cobalamin (Vitamin B12) biosynthesis in Bacillus megaterium , 1986, Journal of Bacteriology.
[52] Marcel Geertz,et al. Massively parallel measurements of molecular interaction kinetics on a microfluidic platform , 2012, Proceedings of the National Academy of Sciences.
[53] L. Dijkhuizen,et al. A Bacillus megaterium Plasmid System for the Production, Export, and One-Step Purification of Affinity-Tagged Heterologous Levansucrase from Growth Medium , 2006, Applied and Environmental Microbiology.
[54] D. Jahn,et al. Microbial production of vitamin B12 , 2002, Applied Microbiology and Biotechnology.
[55] W. Hillen,et al. Catabolite repression of the xyl operon in Bacillus megaterium , 1992, Journal of bacteriology.
[56] Dieter Jahn,et al. Systems biology of recombinant protein production using Bacillus megaterium. , 2011, Methods in enzymology.
[57] Richard M. Murray,et al. Rapidly Characterizing the Fast Dynamics of RNA Genetic Circuitry with Cell-Free Transcription–Translation (TX-TL) Systems , 2014, ACS synthetic biology.
[58] L. Hederstedt,et al. Two hemes in Bacillus subtilis succinate:menaquinone oxidoreductase (complex II). , 1992, Biochemistry.
[59] Tom Ellis,et al. Engineering control of bacterial cellulose production using a genetic toolkit and a new cellulose-producing strain , 2016, Proceedings of the National Academy of Sciences.
[60] C. Wittmann,et al. Getting the big beast to work--systems biotechnology of Bacillus megaterium for novel high-value proteins. , 2013, Journal of biotechnology.
[61] Beatrix Suess,et al. Engineered riboswitches: Expanding researchers' toolbox with synthetic RNA regulators , 2012, FEBS letters.
[62] J. Swartz,et al. Efficient and scalable method for scaling up cell free protein synthesis in batch mode. , 2005, Biotechnology and bioengineering.
[63] Dieter Jahn,et al. High-Yield Intra- and Extracellular Protein Production Using Bacillus megaterium , 2010, Applied and Environmental Microbiology.
[64] Richard M. Murray,et al. Synthetic circuit for exact adaptation and fold-change detection , 2014, Nucleic acids research.
[65] W. Deckwer,et al. High yield recombinant penicillin G amidase production and export into the growth medium using Bacillus megaterium , 2006, Microbial cell factories.
[66] Vincent Noireaux,et al. Efficient cell-free expression with the endogenous E. Coli RNA polymerase and sigma factor 70 , 2010, Journal of biological engineering.