Microbial genotype–phenotype mapping by class association rule mining
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[1] Y. Benjamini,et al. Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .
[2] Inna Dubchak,et al. The integrated microbial genomes (IMG) system , 2005, Nucleic Acids Res..
[3] John D. Storey,et al. Statistical significance for genomewide studies , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[4] Weimin Xiao,et al. Rule interestingness analysis using OLAP operations , 2006, KDD '06.
[5] M. Madigan,et al. Brock Biology of Microorganisms , 1996 .
[6] R. Albert,et al. The large-scale organization of metabolic networks , 2000, Nature.
[7] A. Barabasi,et al. Hierarchical Organization of Modularity in Metabolic Networks , 2002, Science.
[8] J A Eisen,et al. Phylogenomics: improving functional predictions for uncharacterized genes by evolutionary analysis. , 1998, Genome research.
[9] J. Ross Quinlan,et al. Induction of Decision Trees , 1986, Machine Learning.
[10] Hiroyoshi Taniguchi,et al. Relevance network between chemosensitivity and transcriptome in human hepatoma cells. , 2003, Molecular cancer therapeutics.
[11] Nello Cristianini,et al. An Introduction to Support Vector Machines and Other Kernel-based Learning Methods , 2000 .
[12] J. Shaffer. Multiple Hypothesis Testing , 1995 .
[13] Christian von Mering,et al. STRING: a database of predicted functional associations between proteins , 2003, Nucleic Acids Res..
[14] I S Kohane,et al. Mutual information relevance networks: functional genomic clustering using pairwise entropy measurements. , 1999, Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.
[15] D. Eisenberg,et al. Use of Logic Relationships to Decipher Protein Network Organization , 2004, Science.
[16] Mona Singh,et al. A cross-genomic approach for systematic mapping of phenotypic traits to genes. , 2003, Genome research.
[17] Thomas M. Cover,et al. Elements of Information Theory , 2005 .
[18] R. Overbeek,et al. The use of gene clusters to infer functional coupling. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[19] N. Slonim,et al. Ab initio genotype–phenotype association reveals intrinsic modularity in genetic networks , 2006, Molecular systems biology.
[20] Darren A. Natale,et al. The COG database: an updated version includes eukaryotes , 2003, BMC Bioinformatics.
[21] Scott M. Williams,et al. Traversing the conceptual divide between biological and statistical epistasis: systems biology and a more modern synthesis. , 2005, BioEssays : news and reviews in molecular, cellular and developmental biology.
[22] Ramakrishnan Srikant,et al. Fast algorithms for mining association rules , 1998, VLDB 1998.
[23] D. Eisenberg,et al. Assigning protein functions by comparative genome analysis: protein phylogenetic profiles. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[24] Nikos Kyrpides,et al. Genomes OnLine Database (GOLD 1.0): a monitor of complete and ongoing genome projects world-wide , 1999, Bioinform..
[25] D. Lipman,et al. A genomic perspective on protein families. , 1997, Science.
[26] Stan Pounds,et al. Estimation and control of multiple testing error rates for microarray studies , 2006, Briefings Bioinform..
[27] Mark Gerstein,et al. Integration of curated databases to identify genotype-phenotype associations , 2006, BMC Genomics.
[28] Wynne Hsu,et al. Integrating Classification and Association Rule Mining , 1998, KDD.
[29] Peter Clark,et al. Rule Induction with CN2: Some Recent Improvements , 1991, EWSL.
[30] M. J. Jedrzejas,et al. Bacillus Species Proteins Involved in Spore Formation and Degradation: From Identification in the Genome, to Sequence Analysis, and Determination of Function and Structure , 2003, Critical reviews in biochemistry and molecular biology.
[31] Ramakrishnan Srikant,et al. Fast Algorithms for Mining Association Rules in Large Databases , 1994, VLDB.
[32] Christian von Mering,et al. STRING 7—recent developments in the integration and prediction of protein interactions , 2006, Nucleic Acids Res..
[33] Peer Bork,et al. Systematic Association of Genes to Phenotypes by Genome and Literature Mining , 2005, PLoS biology.
[34] John,et al. ESTIMATING THE POSITIVE FALSE DISCOVERY RATE UNDER DEPENDENCE, WITH APPLICATIONS TO DNA MICROARRAYS by , 2007 .
[35] Hiroyuki Ogata,et al. KEGG: Kyoto Encyclopedia of Genes and Genomes , 1999, Nucleic Acids Res..
[36] Bing Liu,et al. Web Data Mining: Exploring Hyperlinks, Contents, and Usage Data , 2006, Data-Centric Systems and Applications.
[37] Hierarchical Organization of Modularity in Metabolic Networks Supporting Online Material , 2002 .
[38] Zoltan Szallasi,et al. Mutual Information Analysis as a Tool to Assess the Role of Aneuploidy in the Generation of Cancer-Associated Differential Gene Expression Patterns , 2001, Pacific Symposium on Biocomputing.