Phylogenetic-based nomenclatural proposals for Ophiocordycipitaceae (Hypocreales) with new combinations in Tolypocladium

Ophiocordycipitaceae is a diverse family comprising ecologically, economically, medicinally, and culturally important fungi. The family was recognized due to the polyphyly of the genus Cordyceps and the broad diversity of the mostly arthropod-pathogenic lineages of Hypocreales. The other two cordyceps-like families, Cordycipitaceae and Clavicipitaceae, will be revised taxonomically elsewhere. Historically, many species were placed in Cordyceps, but other genera have been described in this family as well, including several based on anamorphic features. Currently there are 24 generic names in use across both asexual and sexual life stages for species of Ophiocordycipitaceae. To reflect changes in Art. 59 in the International Code of Nomenclature for algae, fungi, and plants (ICN), we propose to protect and to suppress names within Ophiocordycipitaceae, and to present taxonomic revisions in the genus Tolypocladium, based on rigorous and extensively sampled molecular phylogenetic analyses. When approaching this task, we considered the principles of priority, monophyly, minimizing taxonomic revisions, and the practical utility of these fungi within the wider biological research community.

[1]  W. Gams,et al.  A revision of Verticillium section Prostrata. VI. The genus Haptocillium. , 2001 .

[2]  K. Hyde,et al.  Revision of lignicolous Tubeufiaceae based on morphological reexamination and phylogenetic analysis , 2011, Fungal Diversity.

[3]  Kazutaka Katoh,et al.  Recent developments in the MAFFT multiple sequence alignment program , 2008, Briefings Bioinform..

[4]  M. Dreyfuss,et al.  Occurrence of cyclosporins and cyclosporin-like peptolides in fungi , 1996, Journal of Industrial Microbiology.

[5]  A. Jegorov,et al.  Tolypocladium terricola sp. N., a new mosquito-killing species of the genus Tolypocladium Gams (Hyphomycetes). , 1991, Folia parasitologica.

[6]  R. Samson,et al.  Entomopathogenic species of the hyphomycete genus Tolypocladium , 1984 .

[7]  Yong-Jie Zhang,et al.  What is the Chinese caterpillar fungus Ophiocordyceps sinensis (Ophiocordycipitaceae)? , 2010 .

[8]  K. Hodge,et al.  The genus Podocrella and its nematode-killing anamorph Harposporium. , 2005, Mycologia.

[9]  K. Katoh,et al.  MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. , 2002, Nucleic acids research.

[10]  David S. Hibbett,et al.  Fungal systematics: is a new age of enlightenment at hand? , 2013, Nature Reviews Microbiology.

[11]  Alastair Culham,et al.  A revision of Verticillium sect. Prostrata. I. Phylogenetic studies using ITS sequences , 2000 .

[12]  G. Barron Two new fungal parasites of bdelloid rotifers , 1981 .

[13]  C. Drechsler Some hyphomycetes parasitic on free-living terricokms nematodes. , 1941 .

[14]  W. Gams,et al.  1140) Proposal to Reject Pachybasium niveum Rostr. in Order to Retain the Name Tolypocladium inflatum W. Gams for the Fungus That Produces Cyclosporin , 1994 .

[15]  A. Affokpon,et al.  Efficacy of Paecilomyces lilacinus strain 251 against root knot nematodes in tomato under greenhouse conditions. , 2007, Communications in agricultural and applied biological sciences.

[16]  H. Evans,et al.  Entomogenous fungi of arboreal Coleoptera from Worcestershire, England, including the new species Harposporium bredonense , 2005, Mycological Progress.

[17]  H. Evans,et al.  A revision of Verticillium section Prostrata. V. The genus Pochonia, with notes on Rotiferophthora. , 2001 .

[18]  T. Petch A list of the entomogenous fungi of Great Britain , 1932 .

[19]  Joost A. Stalpers,et al.  Ainsworth and Bisby's dictionary of the fungi: 9th edition. , 1995 .

[20]  Chengshu Wang,et al.  Genome survey uncovers the secrets of sex and lifestyle in caterpillar fungus , 2013 .

[21]  H. Evans,et al.  Cordyceps species and their anamorphs pathogenic on ants (Formicidae) in tropical forest ecosystems. II: The Camponotus (Formicinae) complex , 1982 .

[22]  Jason S. Cumbie,et al.  The Genome of Tolypocladium inflatum: Evolution, Organization, and Expression of the Cyclosporin Biosynthetic Gene Cluster , 2013, PLoS genetics.

[23]  N. Hywel-Jones,et al.  Ophiocordyceps halabalaensis: a new species of Ophiocordyceps pathogenic to Camponotus gigas in Hala Bala Wildlife Sanctuary, Southern Thailand. , 2011, Fungal biology.

[24]  K. Seifert,et al.  An overview of the taxonomy, phylogeny, and typification of nectriaceous fungi in Cosmospora, Acremonium, Fusarium, Stilbella, and Volutella , 2011, Studies in mycology.

[25]  V. K. Charles Notes on Entomogenous Fungi. , 1939 .

[26]  U. Shrestha,et al.  Trade, harvest, and conservation of caterpillar fungus (Ophiocordyceps sinensis) in the Himalayas , 2013 .

[27]  N. Viaene,et al.  Two Harposporium species with Hirsutella synanamorphs , 1997 .

[28]  J. McNeill Guidelines for requests for binding decisions on application of the Code , 2012 .

[29]  A. Logrieco,et al.  One fungus, one name: defining the genus Fusarium in a scientifically robust way that preserves longstanding use. , 2013, Phytopathology.

[30]  James E. Johnson,et al.  Infragenic phylogeny of Collybia s. str. based on sequences of ribosomal ITS and LSU regions , 2001 .

[31]  R. Singhal,et al.  Cyclosporin A--a review on fermentative production, downstream processing and pharmacological applications. , 2011, Biotechnology advances.

[32]  C. A. Shull Phytopathology , 1929, Botanical Gazette.

[33]  G. Barron The nematode-destroying fungi , 1977 .

[34]  R. Humber,et al.  Tolypocladium inflatum is the anamorph of Cordyceps subsessilis , 1996 .

[35]  J. Guarro,et al.  Efficacy of voriconazole in a murine model of invasive paecilomycosis. , 2010, International journal of antimicrobial agents.

[36]  J. Kloepper,et al.  Biocontrol of the Reniform Nematode by Bacillus firmus GB-126 and Paecilomyces lilacinus 251 on Cotton. , 2013, Plant disease.

[37]  A. Rossman Podonectria, a genus in the Pleosporales on scale insects [Fungi]. , 1978 .

[38]  David L. Hawksworth,et al.  Ainsworth & Bisby's Dictionary of the Fungi , 1972 .

[39]  J. Spatafora,et al.  A taxonomic review of the Clavicipitaceous anamorphs parasitizing nematodes and other microinvertebrates. , 2003 .

[40]  L. Kämpfe L. Barron, The Nematode‐Destroying Fungi (Topics in Mycobiology, No. 1). 140 S., 57 Abb., 1 Tab. Guelph‐Ontario, Canada 1977. Canadian Biol. Publ. Ltd. $ 12.50 , 1979 .

[41]  K. Hodge,et al.  The genus Podocrella and its nematode-killing anamorph Harposporium , 2005 .

[42]  G. Barron Structure and biology of a new Tolypocladium attacking bdelloid rotifers , 1983 .

[43]  D. Geiser,et al.  Genera in Bionectriaceae, Hypocreaceae, and Nectriaceae (Hypocreales) proposed for acceptance or rejection , 2013, IMA fungus.

[44]  J. Guarro,et al.  Polyphasic analysis of Purpureocillium lilacinum isolates from different origins and proposal of the new species Purpureocillium lavendulum , 2013, Mycologia.

[45]  K. Seifert,et al.  A Monograph of Stilbella and Some Allied Hyphomycetes , 1985 .

[46]  R. Stone Last Stand for the Body Snatcher of the Himalayas? , 2008, Science.

[47]  M. Tadych,et al.  Nomenclatural realignment of Neotyphodium species with genus Epichloë , 2014, Mycologia.

[48]  R. Humber,et al.  Clarification of generic and species boundaries for Metarhizium and related fungi through multigene phylogenetics , 2014, Mycologia.

[49]  W. Gams Tolypocladium, eine Hyphomycetengattung mit geschwollenen Phialiden , 1971 .

[50]  W. Gams,et al.  Two new hyphomycetes isolated from antarctic lichens , 1993 .

[51]  K. Seifert,et al.  Lectotypification and status of Isaria Pers.: Fr , 2005 .

[52]  S. Glockling,et al.  A new species of Harposporium with two spore types isolated from the larva of a cerambycid beetle , 1997 .

[53]  J. Bissett Notes on Tolypocladium and related genera , 1983 .

[54]  Yi‐Jian Yao,et al.  Evaluation of nutritional and physical stress conditions during vegetative growth on conidial production and germination in Ophiocordyceps sinensis. , 2013, FEMS microbiology letters.

[55]  N. Okhravi,et al.  Clinical manifestations, treatment and outcome of Paecilomyces lilacinus infections. , 2006, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.

[56]  G. Barron Fungal parasites of rotifers: a new Tolypocladium with underwater conidiation , 1980 .

[57]  R. Humber,et al.  Cordyceps variabilis and the genus Syngliocladium , 1998 .

[58]  W. Gams Chaunopycnis alba, gen. et sp. nov., a soil fungus intermediate between Moniliales and Sphaeropsidales , 1980 .

[59]  J. Spatafora,et al.  Isolation of the MAT1-1 mating type idiomorph and evidence for selfing in the Chinese medicinal fungus Ophiocordyceps sinensis. , 2013, Fungal biology.

[60]  J. Spatafora,et al.  The phylogenetic placement of hypocrealean insect pathogens in the genus Polycephalomyces: an application of One Fungus One Name. , 2013, Fungal biology.

[61]  A. Speare Further Studies of Sorosporella uvella, a Fungous Parasite of Noctuid Larvae. , 1920 .

[62]  L. Zengzhi,et al.  The genus Cordyceps and its allies from Anhui I. , 2002 .

[63]  J. Spatafora,et al.  A revision of Verticillium sect. Prostrata. III. Generic classification , 2001 .

[64]  K. Seifert,et al.  1684) Proposal to conserve the name Isaria (anamorphic fungi) with a conserved type , 2005 .

[65]  Gerard Talavera,et al.  Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. , 2007, Systematic biology.

[66]  W. Gams,et al.  The nematode parasite Meria coniospora Drechsler in pure culture and its classification , 1985 .

[67]  P. Cannon,et al.  Steps towards sustainable harvest of Ophiocordyceps sinensis in Bhutan , 2009, Biodiversity and Conservation.

[68]  H. Evans,et al.  New fungal pathogens of the red ant, Myrmica rubra, from the UK and implications for ant invasions in the USA. , 2010, Fungal biology.

[69]  G. Bills,et al.  Chaunopycnis pustulata sp. nov., a new clavicipitalean anamorph producing metabolites that modulate potassium ion channels , 2002, Mycological Progress.

[70]  E. Mains Entomogenous species of Akanthomyces, Hymenostilbe and Insecticola in North America , 1950 .

[71]  G. Barron,et al.  A new hyphomycete parasitic on the ciliated protozoans Vorticella and Opercularia , 1982 .

[72]  N. Hywel-Jones,et al.  Cordyceps cylindrica and its association with Nomuraea atypicola in Thailand , 1995 .

[73]  J. Houbraken,et al.  Purpureocillium, a new genus for the medically important Paecilomyces lilacinus. , 2011, FEMS microbiology letters.

[74]  R. Samson,et al.  Paraisaria, a new genus for Isaria dubia, the anamorph of Cordyceps gracilis , 1983 .

[75]  Alexandros Stamatakis,et al.  RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models , 2006, Bioinform..

[76]  T. Petch Notes on entomgenous fungi. , 1931 .

[77]  J. Spatafora,et al.  A revision of Verticillium sect. Prostrata. II. Phylogenetic analyses of SSU and LSU nuclear rDNA sequences from anamorphs and teleomorphs of the Clavicipitaceae , 2001 .

[78]  H. Evans,et al.  Taxonomic status of the genera Sorosporella and Syngliocladium associated with grasshoppers and locusts (Orthoptera: Acridoidea) in Africa , 2002 .

[79]  J. Spatafora,et al.  Phylogenetic classification of Cordyceps and the clavicipitaceous fungi , 2007, Studies in mycology.