Informatics and computational strategies for the study of lipids.
暂无分享,去创建一个
Matej Oresic | Kim Ekroos | Laxman Yetukuri | Antonio Vidal-Puig | M. Orešič | A. Vidal-Puig | K. Ekroos | L. Yetukuri
[1] M. Wenk. The emerging field of lipidomics , 2005, Nature Reviews Drug Discovery.
[2] Martin Hermansson,et al. Automated quantitative analysis of complex lipidomes by liquid chromatography/mass spectrometry. , 2005, Analytical chemistry.
[3] Haowei Song,et al. Algorithm for processing raw mass spectrometric data to identify and quantitate complex lipid molecular species in mixtures by data-dependent scanning and fragment ion database searching , 2007, Journal of the American Society for Mass Spectrometry.
[4] Peter D. Karp,et al. MetaCyc: a multiorganism database of metabolic pathways and enzymes. , 2004, Nucleic acids research.
[5] Christine C. Wu,et al. Direct qualitative analysis of triacylglycerols by electrospray mass spectrometry using a linear ion trap , 2005, Journal of the American Society for Mass Spectrometry.
[6] Matej Oresic,et al. Integrative biological analysis of the APOE*3-leiden transgenic mouse. , 2004, Omics : a journal of integrative biology.
[7] Christer S. Ejsing,et al. Lipid profiling by multiple precursor and neutral loss scanning driven by the data-dependent acquisition. , 2006, Analytical chemistry.
[8] J. Clapham,et al. Liver‐directed overexpression of mitochondrial glycerol‐3‐phosphate acyltransferase results in hepatic steatosis, increased triacylglycerol secretion and reduced fatty acid oxidation , 2006, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.
[9] F. Bäckhed,et al. Host-Bacterial Mutualism in the Human Intestine , 2005, Science.
[10] Martin Hermansson,et al. Software tools for analysis of mass spectrometric lipidome data. , 2006, Analytical chemistry.
[11] Peter D. Karp,et al. EcoCyc: a comprehensive database resource for Escherichia coli , 2004, Nucleic Acids Res..
[12] Xianlin Han,et al. Shotgun lipidomics: electrospray ionization mass spectrometric analysis and quantitation of cellular lipidomes directly from crude extracts of biological samples. , 2005, Mass spectrometry reviews.
[13] Matej Oresic,et al. Processing methods for differential analysis of LC/MS profile data , 2005, BMC Bioinformatics.
[14] Eoin Fahy,et al. A comprehensive classification system for lipids11 The evaluation of this manuscript was handled by the former Editor-in-Chief Trudy Forte. Published, JLR Papers in Press, February 16, 2005. DOI 10.1194/jlr.E400004-JLR200 , 2005, Journal of Lipid Research.
[15] David W. Russell,et al. LMSD: LIPID MAPS structure database , 2006, Nucleic Acids Res..
[16] Y. Lu,et al. Issues related to targeted delivery of proteins and peptides , 2006, The AAPS Journal.
[17] Marko Sysi-Aho,et al. A Systems Biology Strategy Reveals Biological Pathways and Plasma Biomarker Candidates for Potentially Toxic Statin-Induced Changes in Muscle , 2006, PloS one.
[18] Monica L. Mo,et al. Global reconstruction of the human metabolic network based on genomic and bibliomic data , 2007, Proceedings of the National Academy of Sciences.
[19] A. Shevchenko,et al. Quantitative profiling of phospholipids by multiple precursor ion scanning on a hybrid quadrupole time-of-flight mass spectrometer. , 2002, Analytical chemistry.
[20] Kai Simons,et al. Automated identification and quantification of glycerophospholipid molecular species by multiple precursor ion scanning. , 2006, Analytical chemistry.
[21] H. Brown,et al. Computational lipidomics: a multiplexed analysis of dynamic changes in membrane lipid composition during signal transduction. , 2004, Molecular pharmacology.
[22] A. Häkkinen,et al. Adipose Tissue Inflammation and Increased Ceramide Content Characterize Subjects With High Liver Fat Content Independent of Obesity , 2007, Diabetes.
[23] Diego Miranda-Saavedra,et al. GOLD.db: genomics of lipid-associated disorders database , 2004, BMC Genomics.
[24] M. Ashburner,et al. Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.
[25] Xianlin Han,et al. Global analyses of cellular lipidomes directly from crude extracts of biological samples by ESI mass spectrometry: a bridge to lipidomics. , 2003, Journal of lipid research.
[26] Marko Sysi-Aho,et al. Acquired Obesity Is Associated with Changes in the Serum Lipidomic Profile Independent of Genetic Effects – A Monozygotic Twin Study , 2007, PloS one.
[27] M. Lagarde,et al. Lipidomics is emerging. , 2003, Biochimica et biophysica acta.
[28] Michael C. Thomas,et al. Elucidation of double bond position in unsaturated lipids by ozone electrospray ionization mass spectrometry. , 2007, Analytical chemistry.
[29] A. Smilde,et al. Large-scale human metabolomics studies: a strategy for data (pre-) processing and validation. , 2006, Analytical chemistry.
[30] D. Vance,et al. Biochemistry of Lipids, Lipoproteins and Membranes , 2002 .
[31] Eoin Fahy,et al. LIPID MAPS online tools for lipid research , 2007, Nucleic Acids Res..
[32] S. O’Rahilly,et al. Pharmacological Inhibition of Glucosylceramide Synthase Enhances Insulin Sensitivity , 2007, Diabetes.
[33] Ting Wang,et al. The gut microbiota as an environmental factor that regulates fat storage. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[34] Eric K. Neumann,et al. Phenotype Characterisation Using Integrated Gene Transcript, Protein and Metabolite Profiling , 2004, Applied bioinformatics.
[35] A. Watson,et al. Thematic Review Lipidomics: a Global Approach to Lipid Analysis in Biological Systems , 2022 .
[36] Laxman Yetukuri,et al. PPAR gamma 2 Prevents Lipotoxicity by Controlling Adipose Tissue Expandability and Peripheral Lipid Metabolism , 2007, PLoS genetics.
[37] Matej Oresic,et al. Methods for the differential integrative omic analysis of plasma from a transgenic disease animal model. , 2004, Omics : a journal of integrative biology.
[38] Bernt Wennberg,et al. A new combined multicompartmental model for apolipoprotein B-100 and triglyceride metabolism in VLDL subfractions Published, JLR Papers in Press, October 16, 2004. DOI 10.1194/jlr.M400108-JLR200 , 2005, Journal of Lipid Research.
[39] M. Wenk,et al. Non‐targeted profiling of lipids during kainate‐induced neuronal injury , 2006, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.
[40] Xianlin Han,et al. Quantitative analysis and molecular species fingerprinting of triacylglyceride molecular species directly from lipid extracts of biological samples by electrospray ionization tandem mass spectrometry. , 2001, Analytical biochemistry.
[41] E. Yasugi,et al. How to Search the Glycolipid data in “LIPIDBANK for Web”, the Newly Developed Lipid Database in Japan , 2000 .
[42] Takao Shimizu,et al. A shotgun tandem mass spectrometric analysis of phospholipids with normal-phase and/or reverse-phase liquid chromatography/electrospray ionization mass spectrometry. , 2005, Rapid communications in mass spectrometry : RCM.
[43] Yan Lu,et al. Lipid Mediator Informatics and Proteomics in Inflammation-Resolution , 2006, TheScientificWorldJournal.
[44] Matej Oresic,et al. Bioinformatics strategies for lipidomics analysis: characterization of obesity related hepatic steatosis , 2007, BMC Systems Biology.
[45] A. Kuksis,et al. Software algorithm for automatic interpretation of mass spectra of glycerolipids. , 2002, Rapid communications in mass spectrometry : RCM.
[46] Susumu Goto,et al. The KEGG resource for deciphering the genome , 2004, Nucleic Acids Res..
[47] David Weininger,et al. SMILES, a chemical language and information system. 1. Introduction to methodology and encoding rules , 1988, J. Chem. Inf. Comput. Sci..
[48] M. Caffrey,et al. LIPIDAT: a database of lipid phase transition temperatures and enthalpy changes. DMPC data subset analysis. , 1992, Chemistry and physics of lipids.