An efficient method for genome-wide polyadenylation site mapping and RNA quantification
暂无分享,去创建一个
Vicent Pelechano | Simon Anders | Vladimir Benes | Lars M. Steinmetz | L. Steinmetz | V. Beneš | S. Anders | V. Pelechano | Aino I. Järvelin | S. Wilkening | Manu M. Tekkedil | Stefan Wilkening
[1] R. Elkon,et al. E2F mediates enhanced alternative polyadenylation in proliferation , 2012, Genome Biology.
[2] K. Nishida,et al. Mechanisms and consequences of alternative polyadenylation. , 2011, Molecules and Cells.
[3] Lira Mamanova,et al. Low-bias, strand-specific transcriptome Illumina sequencing by on-flowcell reverse transcription (FRT-seq) , 2011, Nature Protocols.
[4] Xiang-Dong Fu,et al. A multiplex RNA-seq strategy to profile poly(A+) RNA: application to analysis of transcription response and 3' end formation. , 2011, Genomics.
[5] C. Lutz,et al. Alternative mRNA polyadenylation in eukaryotes: an effective regulator of gene expression , 2011, Wiley interdisciplinary reviews. RNA.
[6] P. Sharp,et al. Proliferating Cells Express mRNAs with Shortened 3' Untranslated Regions and Fewer MicroRNA Target Sites , 2008, Science.
[7] P. Brown,et al. Identification of RNA recognition elements in the Saccharomyces cerevisiae transcriptome , 2010, Nucleic acids research.
[8] Peter J. Shepard,et al. Complex and dynamic landscape of RNA polyadenylation revealed by PAS-Seq. , 2011, RNA.
[9] D. Bartel,et al. Formation, Regulation and Evolution of Caenorhabditis elegans 3′UTRs , 2010, Nature.
[10] Helga Thorvaldsdóttir,et al. Integrative Genomics Viewer , 2011, Nature Biotechnology.
[11] T. Babak,et al. A quantitative atlas of polyadenylation in five mammals , 2012, Genome research.
[12] Serban Nacu,et al. Fast and SNP-tolerant detection of complex variants and splicing in short reads , 2010, Bioinform..
[13] B. Tian,et al. Progressive lengthening of 3′ untranslated regions of mRNAs by alternative polyadenylation during mouse embryonic development , 2009, Proceedings of the National Academy of Sciences.
[14] Andrew H. Beck,et al. 3′-End Sequencing for Expression Quantification (3SEQ) from Archival Tumor Samples , 2010, PloS one.
[15] B. Tian,et al. Reprogramming of 3′ Untranslated Regions of mRNAs by Alternative Polyadenylation in Generation of Pluripotent Stem Cells from Different Cell Types , 2009, PloS one.
[16] C. Mayr,et al. Widespread Shortening of 3′UTRs by Alternative Cleavage and Polyadenylation Activates Oncogenes in Cancer Cells , 2009, Cell.
[17] Tyson A. Clark,et al. HITS-CLIP yields genome-wide insights into brain alternative RNA processing , 2008, Nature.
[18] L. Steinmetz,et al. Bidirectional promoters generate pervasive transcription in yeast , 2009, Nature.
[19] W. Huber,et al. which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. MAnorm: a robust model for quantitative comparison of ChIP-Seq data sets , 2011 .
[20] P. Kapranov,et al. Comprehensive Polyadenylation Site Maps in Yeast and Human Reveal Pervasive Alternative Polyadenylation , 2010, Cell.
[21] T. Hashimshony,et al. CEL-Seq: single-cell RNA-Seq by multiplexed linear amplification. , 2012, Cell reports.
[22] S. Kuersten,et al. The power of the 3′ UTR: translational control and development , 2003, Nature Reviews Genetics.
[23] Vicent Pelechano,et al. Genome-wide polyadenylation site mapping. , 2012, Methods in enzymology.
[24] G. Azzam,et al. Developmental RNA processing of 3′UTRs in Hox mRNAs as a context-dependent mechanism modulating visibility to microRNAs , 2010, Development.
[25] N. Woo,et al. Distinct Role of Long 3′ UTR BDNF mRNA in Spine Morphology and Synaptic Plasticity in Hippocampal Neurons , 2008, Cell.
[26] Job Harms,et al. THE LANDSCAPE OF , 2010 .
[27] T. Borodina,et al. Transcriptome analysis by strand-specific sequencing of complementary DNA , 2009, Nucleic acids research.
[28] M. Gerstein,et al. The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing , 2008, Science.
[29] Sebastian D. Mackowiak,et al. The Landscape of C. elegans 3′UTRs , 2010, Science.
[30] R. Brem,et al. Noncanonical transcript forms in yeast and their regulation during environmental stress. , 2010, RNA.
[31] W. Huber,et al. Detecting differential usage of exons from RNA-seq data , 2012, Genome research.
[32] Bin Tian,et al. A large-scale analysis of mRNA polyadenylation of human and mouse genes , 2005, Nucleic acids research.
[33] J. Corden,et al. Termination of cryptic unstable transcripts is directed by yeast RNA-binding proteins Nrd1 and Nab3. , 2006, Molecular cell.