Bioinfo-Kit: A Sharing Software Tool for Bioinformatics

In bioinformatics research, for the lacks of an effective algorithm-integrating mechanism and a friendly graphical user interface of the toolkits in the field of biological data processing and analyzing, the authors designed and implemented a sharing software system Bioinfo-Kit based on the Java 2 Platform Enterprise Edition (J2EE), which provides 1) a general application development interface to integrate or bridge other programs and 2) a workflow mechanism to operate them and make them talk easily. In addition, a module for biological data (multiple electrodes data, biomedical data and etc.) analysis was implemented in the software system, which provided a workflow mechanism to integrate a series of algorithms and visualization tools. Because the interface developed is very general and flexible, new analysis tools can be integrated effectively as required. Bioinfo-Kit implies an ideal environment for integrative bioinformatics research.