Segmentation of distal airways using structural analysis

Segmentation of airways in Computed Tomography (CT) scans is a must for accurate support of diagnosis and intervention of many pulmonary disorders. In particular, lung cancer diagnosis would benefit from segmentations reaching most distal airways. We present a method that combines descriptors of bronchi local appearance and graph global structural analysis to fine-tune thresholds on the descriptors adapted for each bronchial level. We have compared our method to the top performers of the EXACT09 challenge and to a commercial software for biopsy planning evaluated in an own-collected data-base of high resolution CT scans acquired under different breathing conditions. Results on EXACT09 data show that our method provides a high leakage reduction with minimum loss in airway detection. Results on our data-base show the reliability across varying breathing conditions and a competitive performance for biopsy planning compared to a commercial solution.

[1]  G LoweDavid,et al.  Distinctive Image Features from Scale-Invariant Keypoints , 2004 .

[2]  Andrew Zisserman,et al.  Return of the Devil in the Details: Delving Deep into Convolutional Nets , 2014, BMVC.

[3]  Reinhard Beichel,et al.  Graph-Based Airway Tree Reconstruction From Chest CT Scans: Evaluation of Different Features on Five Cohorts , 2015, IEEE Transactions on Medical Imaging.

[4]  J. Douglas Faires,et al.  Numerical Analysis , 1981 .

[5]  P M Silverman,et al.  CT identification of bronchopulmonary segments: 50 normal subjects. , 1984, AJR. American journal of roentgenology.

[6]  Alireza Ahmadian,et al.  Leakage suppression in human airway tree segmentation using shape optimization based on fuzzy connectivity method , 2013, Int. J. Imaging Syst. Technol..

[7]  Debora Gil,et al.  Positive Airway Pressure to Enhance Computed Tomography Imaging for Airway Segmentation for Virtual Bronchoscopic Navigation , 2018, Respiration.

[8]  A. Aliverti,et al.  3D Airway Tree Reconstruction in Healthy Subjects and Emphysema , 2011, Lung.

[9]  Yoshiro Kitamura,et al.  Robust airway extraction based on machine learning and minimum spanning tree , 2013, Medical Imaging.

[10]  Claus Peter Heussel,et al.  LungPoint—A New Approach to Peripheral Lesions , 2010, Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer.

[11]  R. V. Van Uitert,et al.  Subvoxel precise skeletons of volumetric data based on fast marching methods. , 2007, Medical physics.

[13]  Guillermo Sapiro,et al.  Image inpainting , 2000, SIGGRAPH.

[14]  Debora Gil,et al.  BronchoX: bronchoscopy exploration software for biopsy intervention planning , 2018, Healthcare technology letters.

[15]  Raúl San José Estépar,et al.  Optimizing parameters of an open-source airway segmentation algorithm using different CT images , 2015, BioMedical Engineering OnLine.

[16]  F. Lindseth,et al.  Navigated Bronchoscopy: A Technical Review , 2014, Journal of bronchology & interventional pulmonology.

[17]  Johan H C Reiber,et al.  Volume correction in computed tomography densitometry for follow-up studies on pulmonary emphysema. , 2008, Proceedings of the American Thoracic Society.

[18]  Bram van Ginneken,et al.  Improving airway segmentation in computed tomography using leak detection with convolutional networks , 2017, Medical Image Anal..

[19]  Marleen de Bruijne,et al.  Optimal Graph Based Segmentation Using Flow Lines with Application to Airway Wall Segmentation , 2011, IPMI.

[20]  William E. Higgins,et al.  Robust 3-D Airway Tree Segmentation for Image-Guided Peripheral Bronchoscopy , 2010, IEEE Transactions on Medical Imaging.

[21]  D. Gur,et al.  CT based computerized identification and analysis of human airways: a review. , 2012, Medical physics.

[22]  Eric A. Hoffman,et al.  Extraction of Airways From CT (EXACT'09) , 2012, IEEE Transactions on Medical Imaging.

[23]  Ulas Bagci,et al.  A hybrid multi-scale approach to automatic airway tree segmentation from CT scans , 2013, 2013 IEEE 10th International Symposium on Biomedical Imaging.

[24]  Philip Kollmannsberger,et al.  Architecture of the osteocyte network correlates with bone material quality , 2013, Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research.

[25]  Matthijs C. Dorst Distinctive Image Features from Scale-Invariant Keypoints , 2011 .

[26]  Rebecca Bascom,et al.  Interbronchoscopist variability in endobronchial path selection: a simulation study. , 2008, Chest.

[27]  Pall Jens Reynisson,et al.  Airway Segmentation and Centerline Extraction from Thoracic CT – Comparison of a New Method to State of the Art Commercialized Methods , 2015, PloS one.