Genome-wide RNAi analysis of JAK/STAT signaling components in Drosophila.

The cytokine-activated Janus kinase (JAK)/signal transducer and activator of transcription (STAT) pathway plays an important role in the control of a wide variety of biological processes. When misregulated, JAK/STAT signaling is associated with various human diseases, such as immune disorders and tumorigenesis. To gain insights into the mechanisms by which JAK/STAT signaling participates in these diverse biological responses, we carried out a genome-wide RNA interference (RNAi) screen in cultured Drosophila cells. We identified 121 genes whose double-stranded RNA (dsRNA)-mediated knockdowns affected STAT92E activity. Of the 29 positive regulators, 13 are required for the tyrosine phosphorylation of STAT92E. Furthermore, we found that the Drosophila homologs of RanBP3 and RanBP10 are negative regulators of JAK/STAT signaling through their control of nucleocytoplasmic transport of STAT92E. In addition, we identified a key negative regulator of Drosophila JAK/STAT signaling, protein tyrosine phosphatase PTP61F, and showed that it is a transcriptional target of JAK/STAT signaling, thus revealing a novel negative feedback loop. Our study has uncovered many uncharacterized genes required for different steps of the JAK/STAT signaling pathway.

[1]  N. Perrimon,et al.  Functional Genomic Analysis of the Wnt-Wingless Signaling Pathway , 2005, Science.

[2]  D. Barford,et al.  TYK2 and JAK2 Are Substrates of Protein-tyrosine Phosphatase 1B* , 2001, The Journal of Biological Chemistry.

[3]  N. Perrimon,et al.  Drosophila unpaired encodes a secreted protein that activates the JAK signaling pathway. , 1998, Genes & development.

[4]  T. Hirano,et al.  Extracellular signal‐dependent nuclear import of Stat1 is mediated by nuclear pore‐targeting complex formation with NPI‐1, but not Rch1 , 1997, The EMBO journal.

[5]  A. Sharpe,et al.  Defects in B Lymphocyte Maturation and T Lymphocyte Activation in Mice Lacking Jak3 , 1995, Science.

[6]  J. Marine,et al.  Jak2 Is Essential for Signaling through a Variety of Cytokine Receptors , 1998, Cell.

[7]  S. Hou,et al.  Cyclin D-Cdk4 and cyclin E-Cdk2 regulate the Jak/STAT signal transduction pathway in Drosophila. , 2003, Developmental cell.

[8]  W. P. Hanratty,et al.  The Drosophila Tumorous lethal hematopoietic oncogene is a dominant mutation in the hopscotch locus , 1993, Molecular and General Genetics MGG.

[9]  Hua Yu,et al.  The STATs of cancer — new molecular targets come of age , 2004, Nature Reviews Cancer.

[10]  N. Perrimon,et al.  The cell adhesion molecule Echinoid defines a new pathway that antagonizes the Drosophila EGF receptor signaling pathway. , 2001, Development.

[11]  N. Aoki,et al.  A Cytosolic Protein-tyrosine Phosphatase PTP1B Specifically Dephosphorylates and Deactivates Prolactin-activated STAT5a and STAT5b* , 2000, The Journal of Biological Chemistry.

[12]  N. Perrimon,et al.  The Jak/STAT pathway in model organisms: emerging roles in cell movement. , 2002, Developmental cell.

[13]  C. Burge,et al.  Prediction of Mammalian MicroRNA Targets , 2003, Cell.

[14]  K. Shuai,et al.  Regulation of JAK–STAT signalling in the immune system , 2003, Nature Reviews Immunology.

[15]  R. Schreiber,et al.  Targeted Disruption of the Stat1 Gene in Mice Reveals Unexpected Physiologic Specificity in the JAK–STAT Signaling Pathway , 1996, Cell.

[16]  N. Perrimon,et al.  Activation of a Drosophila Janus kinase (JAK) causes hematopoietic neoplasia and developmental defects. , 1995, The EMBO journal.

[17]  N. Perrimon,et al.  Targeted gene expression as a means of altering cell fates and generating dominant phenotypes. , 1993, Development.

[18]  A. Cumano,et al.  Jak2 Deficiency Defines an EssentialDevelopmental Checkpoint in DefinitiveHematopoiesis , 1998, Cell.

[19]  N. Perrimon,et al.  The autosomal FLP-DFS technique for generating germline mosaics in Drosophila melanogaster. , 1996, Genetics.

[20]  D. Levy,et al.  Roles of JAKs in activation of STATs and stimulation of c-fos gene expression by epidermal growth factor , 1996, Molecular and cellular biology.

[21]  C. Dearolf,et al.  Fruit fly "leukemia". , 1998, Biochimica et biophysica acta.

[22]  R. Schreiber,et al.  Disruption of the Jak1 Gene Demonstrates Obligatory and Nonredundant Roles of the Jaks in Cytokine-Induced Biologic Responses , 1998, Cell.

[23]  A. Brand,et al.  Ectopic gene expression in Drosophila using GAL4 system. , 1998, Methods.

[24]  H. Luo,et al.  A JAK-STAT pathway regulates wing vein formation in Drosophila. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[25]  Pengyu Hong,et al.  Evidence of off-target effects associated with long dsRNAs in Drosophila melanogaster cell-based assays , 2006, Nature Methods.

[26]  P. Doherty,et al.  Defective Lymphoid Development in Mice Lacking Jak3 , 1995, Science.

[27]  Mark J. Bowser,et al.  EGFR-induced cell migration is mediated predominantly by the JAK-STAT pathway in primary esophageal keratinocytes. , 2004, American journal of physiology. Gastrointestinal and liver physiology.

[28]  N. Perrimon,et al.  Genome-Wide RNAi Analysis of Growth and Viability in Drosophila Cells , 2004, Science.

[29]  H. Nakauchi,et al.  Developmental defects of lymphoid cells in Jak3 kinase-deficient mice. , 1995, Immunity.

[30]  Lawrence Lum,et al.  Prevalence of off-target effects in Drosophila RNA interference screens , 2006, Nature.

[31]  M. Fellous,et al.  A protein tyrosine kinase in the interferon α β signaling pathway , 1992, Cell.

[32]  Nir Hacohen,et al.  Minimizing the risk of reporting false positives in large-scale RNAi screens , 2006, Nature Methods.

[33]  J. Ihle,et al.  Phosphorylation and Activation of the DNA Binding Activity of Purified Stat1 by the Janus Protein-tyrosine Kinases and the Epidermal Growth Factor Receptor (*) , 1995, The Journal of Biological Chemistry.

[34]  B. Mathey-Prevot,et al.  SOCS36E, a novel Drosophila SOCS protein, suppresses JAK/STAT and EGF-R signalling in the imaginal wing disc , 2002, Oncogene.

[35]  D. Levy,et al.  Targeted Disruption of the Mouse Stat1 Gene Results in Compromised Innate Immunity to Viral Disease , 1996, Cell.

[36]  J. Bromberg Activation of STAT proteins and growth control , 2001, BioEssays : news and reviews in molecular, cellular and developmental biology.

[37]  W. Tao,et al.  Human homologue of the Drosophila melanogaster lats tumour suppressor modulates CDC2 activity , 1999, Nature Genetics.

[38]  Norbert Perrimon,et al.  A sensitized genetic screen to identify novel regulators and components of the Drosophila janus kinase/signal transducer and activator of transcription pathway. , 2003, Genetics.

[39]  Kevin M. McBride,et al.  Nuclear export signal located within the DNA‐binding domain of the STAT1transcription factor , 2000, The EMBO journal.

[40]  E. Hedgecock,et al.  Hemicentin, a conserved extracellular member of the immunoglobulin superfamily, organizes epithelial and other cell attachments into oriented line-shaped junctions. , 2001, Development.

[41]  M. Hortsch,et al.  Neuroglian activates Echinoid to antagonize the Drosophila EGF receptor signaling pathway , 2003, Development.

[42]  Norbert Perrimon,et al.  marelle Acts Downstream of the Drosophila HOP/JAK Kinase and Encodes a Protein Similar to the Mammalian STATs , 1996, Cell.

[43]  M Vingron,et al.  An integrated gene annotation and transcriptional profiling approach towards the full gene content of the Drosophila genome , 2003, Genome Biology.

[44]  N. Perrimon,et al.  Stripe-specific regulation of pair-rule genes by hopscotch, a putative Jak family tyrosine kinase in Drosophila. , 1994, Genes & development.