Distinct conformational states of nuclear receptor–bound CRSP–Med complexes

The human CRSP–Med coactivator complex is targeted by a diverse array of sequence-specific regulatory proteins. Using EM and single-particle reconstruction techniques, we recently completed a structural analysis of CRSP–Med bound to VP16 and SREBP-1a. Notably, these activators induced distinct conformational states upon binding the coactivator. Ostensibly, these different conformational states result from VP16 and SREBP-1a targeting distinct subunits in the CRSP–Med complex. To test this, we conducted a structural analysis of CRSP–Med bound to either thyroid hormone receptor (TR) or vitamin D receptor (VDR), both of which interact with the same subunit (Med220) of CRSP–Med. Structural comparison of TR- and VDR-bound complexes (at a resolution of 29 Å) indeed reveals a shared conformational feature that is distinct from other known CRSP– Med structures. Importantly, this nuclear receptor–induced structural shift seems largely dependent on the movement of Med220 within the complex.

[1]  M. Carlson Genetics of transcriptional regulation in yeast: connections to the RNA polymerase II CTD. , 1997, Annual review of cell and developmental biology.

[2]  C. Glass,et al.  The coregulator exchange in transcriptional functions of nuclear receptors. , 2000, Genes & development.

[3]  J. Qin,et al.  The USA-derived transcriptional coactivator PC2 is a submodule of TRAP/SMCC and acts synergistically with other PCs. , 2000, Molecular cell.

[4]  M. Heel,et al.  Exact filters for general geometry three dimensional reconstruction , 1986 .

[5]  Paul Tempst,et al.  Ligand-dependent transcription activation by nuclear receptors requires the DRIP complex , 1999, Nature.

[6]  Qianben Wang,et al.  Specific Structural Motifs Determine TRAP220 Interactions with Nuclear Hormone Receptors , 2000, Molecular and Cellular Biology.

[7]  Michael R. Green,et al.  Dissecting the Regulatory Circuitry of a Eukaryotic Genome , 1998, Cell.

[8]  A Leith,et al.  SPIDER and WEB: processing and visualization of images in 3D electron microscopy and related fields. , 1996, Journal of structural biology.

[9]  Roger D Kornberg,et al.  Structure of the yeast RNA polymerase II holoenzyme: Mediator conformation and polymerase interaction. , 2002, Molecular cell.

[10]  J. Frank,et al.  Three‐dimensional reconstruction from a single‐exposure, random conical tilt series applied to the 50S ribosomal subunit of Escherichia coli , 1987, Journal of microscopy.

[11]  Robert Tjian,et al.  Structure, Function, and Activator-Induced Conformations of the CRSP Coactivator , 2002, Science.

[12]  L. Freedman,et al.  Mediator complexes and transcription. , 2001, Current opinion in cell biology.

[13]  D. Heery,et al.  An Extended LXXLL Motif Sequence Determines the Nuclear Receptor Binding Specificity of TRAP220* , 2003, The Journal of Biological Chemistry.

[14]  R. Tjian,et al.  Transcriptional coactivator complexes. , 2001, Annual review of biochemistry.

[15]  R. Tjian,et al.  Human CRSP interacts with RNA polymerase II CTD and adopts a specific CTD-bound conformation. , 2002, Genes & development.

[16]  R. Kornberg,et al.  Structural organization of yeast and mammalian mediator complexes. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[17]  K. Umesono,et al.  The nuclear receptor superfamily: The second decade , 1995, Cell.

[18]  C. Glass,et al.  Determinants of coactivator LXXLL motif specificity in nuclear receptor transcriptional activation. , 1998, Genes & development.

[19]  E. Kremmer,et al.  A novel docking site on Mediator is critical for activation by VP16 in mammalian cells , 2003, The EMBO journal.

[20]  R J Fletterick,et al.  Structure and specificity of nuclear receptor-coactivator interactions. , 1998, Genes & development.

[21]  R. Kornberg,et al.  Mediator of transcriptional regulation. , 2000, Annual review of biochemistry.

[22]  R. Roeder,et al.  Eukaryotic gene transcription with purified components. , 1983, Methods in enzymology.

[23]  J. Gustafsson,et al.  Differential Recruitment of the Mammalian Mediator Subunit TRAP220 by Estrogen Receptors ERα and ERβ* , 2001, The Journal of Biological Chemistry.

[24]  J. Qin,et al.  A novel human SRB/MED-containing cofactor complex, SMCC, involved in transcription regulation. , 1999, Molecular cell.

[25]  R. Tjian,et al.  Structure and function of CRSP/Med2; a promoter-selective transcriptional coactivator complex. , 2004, Molecular cell.

[26]  D. Reinberg,et al.  TFIIH is negatively regulated by cdk8-containing mediator complexes , 2000, Nature.

[27]  E. Lees,et al.  Mammalian Srb/Mediator complex is targeted by adenovirus E1A protein , 1999, Nature.

[28]  M. Boube,et al.  Evidence for a Mediator of RNA Polymerase II Transcriptional Regulation Conserved from Yeast to Man , 2002, Cell.

[29]  R. Roeder,et al.  Ligand induction of a transcriptionally active thyroid hormone receptor coactivator complex. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[30]  R. Roeder,et al.  The TRAP220 component of a thyroid hormone receptor- associated protein (TRAP) coactivator complex interacts directly with nuclear receptors in a ligand-dependent fashion. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[31]  D. Reinberg,et al.  NAT, a human complex containing Srb polypeptides that functions as a negative regulator of activated transcription. , 1998, Molecular cell.

[32]  R. Tjian,et al.  Composite co-activator ARC mediates chromatin-directed transcriptional activation , 1999, Nature.

[33]  J. Frank,et al.  The ribosome at improved resolution: new techniques for merging and orientation refinement in 3D cryo-electron microscopy of biological particles. , 1994, Ultramicroscopy.

[34]  Robert Tjian,et al.  The transcriptional cofactor complex CRSP is required for activity of the enhancer-binding protein Sp1 , 1999, Nature.

[35]  Fajun Yang,et al.  The activator-recruited cofactor/Mediator coactivator subunit ARC92 is a functionally important target of the VP16 transcriptional activator. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[36]  J. Qin,et al.  Identity between TRAP and SMCC complexes indicates novel pathways for the function of nuclear receptors and diverse mammalian activators. , 1999, Molecules and Cells.

[37]  J Frank,et al.  Classification of macromolecular assemblies studied as ‘single particles’ , 1990, Quarterly Reviews of Biophysics.

[38]  William Bourguet,et al.  A canonical structure for the ligand-binding domain of nuclear receptors , 1996, Nature Structural Biology.

[39]  R. Tjian,et al.  Chromatin, TAFs, and a novel multiprotein coactivator are required for synergistic activation by Sp1 and SREBP-1a in vitro. , 1998, Genes & development.

[40]  D. Moras,et al.  The crystal structure of the nuclear receptor for vitamin D bound to its natural ligand. , 2000, Molecular cell.

[41]  R. Tjian,et al.  Transcription regulation and animal diversity , 2003, Nature.