Candidate bioindicator measures to monitor exposure to changing water quality on the Great Barrier Reef. Interim Report

Spatial variation of water column characteristics, sediment and irradiance on coral reefs was examined in the Whitsunday region of the Great Barrier Reef during five sampling events between 2004 and 2006 (Fig. 2.1). Sampling locations were selected along a transect from outer reefs distant from terrestrial inputs, to coastal reefs near the Australian mainland. Most of the water column variables (especially chlorophyll a, total suspended solids, particulate organic carbon and particulate nutrients) and irradiance variables (Secchi and optical depth) changed significantly along the transect. For example, concentrations of chlorophyll a and total suspended solids increased twoand three-fold, respectively, from outer to coastal locations, while sediment inorganic carbon decreased and sediment colour became darker. Similarly, Secchi and optical depth, two measures of water transparency, decreased approximately three-fold towards the coast. Most of these gradients were persistent over the five sampling events, but for several parameters, the magnitude and steepness of the gradient changed. The maximum depth of zooxanthellate corals increased five-fold along the gradient and was related significantly to a water quality index derived for the Whitsunday Islands. Our data of the maximal depth limit for reef development at locations where suitable settlement substrata were available suggest that the absolute minimum of light required for a reef to persist is in the range of 6-8% of surface irradiance in the Whitsunday Islands.

[1]  H. Kirkman,et al.  Biomass and growth of Zostera capricorni Aschers. in Port Hacking, N. S. W. , Australia. , 1982 .

[2]  W. Goldberg,et al.  Effects of turbidity on the photosynthesis and respiration of two south Florida reef coral species , 1995 .

[3]  R. Coles,et al.  Intra-annual changes in seagrass standing crop, Green Island, Northern Queensland , 1993 .

[4]  John B. Lewis,et al.  Abundance, distribution and partial mortality of the massive coral Siderastrea siderea on degrading coral reefs at Barbados, West Indies , 1997 .

[5]  R. Babcock Reproduction and distribution of two species of Goniastrea (Scleractinia) from the Great Barrier Reef province , 1984, Coral Reefs.

[6]  C. Dai,et al.  Reproductive ecology of the scleractinian coral Echinopora lamellosa in northern and southern Taiwan , 1995 .

[7]  V. Paul,et al.  Inhibition of coral recruitment by macroalgae and cyanobacteria , 2006 .

[8]  J. Stimson The annual cycle of density of zooxanthellae in the tissues of field and laboratory-held Pocillopora damicornis (Linnaeus) , 1997 .

[9]  M. Charuchinda,et al.  Effect of sedimentation from coastal mining on coral reefs on the northwestern coast of Phuket Island, Thailand , 1981 .

[10]  J. Kleypas,et al.  Coral reef development under naturally turbid conditions: fringing reefs near Broad Sound, Australia , 1996, Coral Reefs.

[11]  E. A. Kirkby,et al.  Principles of Plant Nutrition , 1980, Springer Netherlands.

[12]  R. Kinzie,et al.  Effects of nitrogen and phosphorus enrichement on in vivo symbiotic zooxanthellae of Pocillopora damicornis , 1994 .

[13]  E. Edinger,et al.  Sponge borehole size as a relative measure of bioerosion and paleoproductivity , 1996 .

[14]  Mayumi Sato Mortality and growth of juvenile coral Pocillopora damicornis (Linnaeus) , 1985, Coral Reefs.

[15]  J. Jaubert,et al.  Effect of nutrient enrichment on growth and photosynthesis of the zooxanthellate coral Stylophora pistillata , 2000, Coral Reefs.

[16]  P. Davies,et al.  Effects of elevated nitrogen and phosphorus on coral reef growth1 , 1979 .

[17]  Glenn De'ath,et al.  IDENTIFYING ECOLOGICAL CHANGE AND ITS CAUSES: A CASE STUDY ON CORAL REEFS , 2004 .

[18]  John J. Cullen,et al.  Sunlight and water transparency: cornerstones in coral research , 2002 .

[19]  R. van Woesik,et al.  Spatial and temporal variance of river discharge on Okinawa (Japan): inferring the temporal impact on adjacent coral reefs. , 2001, Marine pollution bulletin.

[20]  John W. McManus,et al.  Reefs at Risk: A Map-Based Indicator of Threats to the World's Coral Reefs , 1998 .

[21]  W. Dennison,et al.  Nitrogen versus phosphorus limitation for growth of an estuarine population of eelgrass (Zostera marina L.) , 1992 .

[22]  W. Dennison,et al.  Responses of seagrass to nutrients in the Great Barrier Reef, Australia , 1999 .

[23]  K. Holmes Effects of eutrophication on bioeroding sponge communities with the description of new West Indian sponges, Cliona spp. (Porifera: Hadromerida: Clionidae) , 2005 .

[24]  Calyampudi R. Rao The use and interpretation of principal component analysis in applied research , 1964 .

[25]  O. Hoegh‐Guldberg,et al.  Monitoring coral bleaching using a colour reference card , 2006, Coral Reefs.

[26]  K. Fabricius,et al.  Effects of the herbicide diuron on the early life history stages of coral. , 2005, Marine pollution bulletin.

[27]  P. Young,et al.  Patterns of some seagrass distribution in the Torres Strait, Queensland , 1982 .

[28]  W. Parton,et al.  Agricultural intensification and ecosystem properties. , 1997, Science.

[29]  L. McCook Effects of herbivory on zonation of Sargassum spp. within fringing reefs of the central Great Barrier Reef , 1997 .

[30]  A. Raftery Bayesian Model Selection in Social Research , 1995 .

[31]  E. Edinger,et al.  Bioerosion of Live Massive Corals and Branching Coral Rubble on Indonesian Coral Reefs , 2000 .

[32]  D. Burdick,et al.  Mesocosm experiments quantify the effects of eutrophication on eelgrass, Zostera marina , 1995 .

[33]  L. McCook,et al.  The fate of bleached corals: patterns and dynamics of algal recruitment , 2002 .

[34]  Jack Morelock,et al.  Oceanography and Patterns of Shelf Sediments Mayaguez, Puerto Rico , 1983 .

[35]  C. Hunter,et al.  An experimental analysis of the effects of herbivory and nutrient enrichment on benthic community dynamics on a Hawaiian reef , 2001, Coral Reefs.

[36]  Gerald M. Friedman,et al.  Principles of sedimentology , 1978 .

[37]  B. Lapointe Phosphorus- and nitrogen-limited photosynthesis and growth of Gracilaria tikvahiae (Rhodophyceae) in the Florida Keys: an experimental field study , 1987 .

[38]  F. T. Te Response to higher sediment loads by Pocillopora damicornis planulae , 1992, Coral Reefs.

[39]  G. De’ath,et al.  Species richness and community structure of reef-building corals on the nearshore Great Barrier Reef , 2006, Coral Reefs.

[40]  P. Larcombe,et al.  Increased sediment supply to the Great Barrier Reef will not increase sediment accumulation at most coral reefs , 1999, Coral Reefs.

[41]  P. Sammarco Diadema and its relationship to coral spat mortality: Grazing, competition, and biological disturbance , 1980 .

[42]  J. Cortés Corals of the world , 2001 .

[43]  C. Hearn,et al.  A physical derivation of nutrient-uptake rates in coral reefs: effects of roughness and waves , 2001, Coral reefs.

[44]  K. Anthony Enhanced energy status of corals on coastal, high-turbidity reefs , 2006 .

[45]  K. Anthony Coral suspension feeding on fine particulate matter , 1999 .

[46]  R. Aronson,et al.  The 1998 bleaching event and its aftermath on a coral reef in Belize , 2002 .

[47]  K. Fabricius,et al.  Rapid Smothering of Coral Reef Organisms by Muddy Marine Snow , 2000 .

[48]  G. F. Humphrey,et al.  New spectrophotometric equations for determining chlorophylls a, b, c1 and c2 in higher plants, algae and natural phytoplankton , 1975 .

[49]  G. Kendrick Recruitment of coralline crusts and filamentous turf algae in the Galapagos archipelago: effect of simulated scour, erosion and accretion , 1991 .

[50]  James Udy,et al.  Growth and physiological responses of three seagrass species to elevated sediment nutrients in Moreton Bay, Australia , 1997 .

[51]  J. Lough,et al.  Comparisons of skeletal density variations in Porites from the central Great Barrier Reef , 1992 .

[52]  D. Alongi,et al.  The cycling and fate of terrestrially-derived sediments and nutrients in the coastal zone of the Great Barrier Reef shelf. , 2005, Marine pollution bulletin.

[53]  T. Parsons,et al.  A practical handbook of seawater analysis , 1968 .

[54]  D. Hubbard Sedimentation as a control of reef development: St. Croix, U.S.V.I. , 1986, Coral Reefs.

[55]  H. Cornell,et al.  Coral species richness: ecological versus biogeographical influences , 2000, Coral Reefs.

[56]  L. McCook,et al.  Effects of live coral, epilithic algal communities and substrate type on algal recruitment , 2004, Coral Reefs.

[57]  B. Maxwell,et al.  Humans, Hydrology, and the Distribution of Inorganic Nutrient Loading to the Ocean , 2003 .

[58]  W. Hunte,et al.  Effects of eutrophication and sedimentation on juvenile corals , 1992 .

[59]  P. Davies,et al.  Nitrate increases zooxanthellae population density and reduces skeletogenesis in corals , 1996 .

[60]  Glenn De'ath,et al.  Factors affecting the behaviour of crown-of-thorns starfish (Acanthaster planci L.) on the Great Barrier Reef: 2: Feeding preferences , 1998 .

[61]  O. Hoegh‐Guldberg,et al.  Response of a scleractinian coral, Stylophora pistillata, to iron and nitrate enrichment. , 2001, Journal of experimental marine biology and ecology.

[62]  J. Lucas Quantitative studies of feeding and nutrition during larval development of the coral reef asteroid Acanthaster planci (L.) , 1982 .

[63]  K. Rowan,et al.  The effect of orthophosphate concentration on the growth of articulated coralline algae (Rhodophyta) , 1977 .

[64]  C. Braak,et al.  Permutation Versus Bootstrap Significance Tests in Multiple Regression and Anova , 1992 .

[65]  P. Boon Nitrogen pools in seagrass beds of Cymodocea serrulata and Zostera capricorni of Moreton Bay, Australia , 1986 .

[66]  Jon Brodie,et al.  Are increased nutrient inputs responsible for more outbreaks of crown-of-thorns starfish? An appraisal of the evidence. , 2005, Marine pollution bulletin.

[67]  J. Lough,et al.  Systematic variations in the depth of skeleton occupied by coral tissue in massive colonies of Porites from the Great Barrier Reef , 1992 .

[68]  N. Quinn,et al.  Seasonal and depth variation in fecundity of Acropora palifera at two reefs in Papua New Guinea , 1984, Coral Reefs.

[69]  J. Meyer,et al.  Migrating haemulid fishes as a source of nutrients and organic matter on coral reefs1 , 1985 .

[70]  P. Hutchings,et al.  Influence of land runoff on rates and agents of bioerosion of coral substrates. , 2005, Marine pollution bulletin.

[71]  K. Fabricius,et al.  Fine sediment budget on an inner-shelf coral-fringed island, Great Barrier Reef of Australia , 2005 .

[72]  S. Jameson,et al.  Development of biological criteria for coral reef ecosystem assessment , 1998 .

[73]  C. Birkeland Geographic Comparisons of Coral-Reef Community Processes , 2004 .

[74]  Carlos M. Duarte,et al.  Seagrass ecology at the turn of the millennium: challenges for the new century , 1999 .

[75]  John Stimson,et al.  The temporal pattern and rate of release of zooxanthellae from the reef coral Pocillopora damicornis (Linnaeus) under nitrogen-enrichment and control conditions , 1991 .

[76]  P. Glynn,et al.  Environmental influences on skeletal banding in eastern Pacific (Panama) corals , 1983, Coral Reefs.

[77]  T Tomascik,et al.  Settlement patterns of Caribbean scleractinian corals on artificial substrata along a eutrophication gradient, Barbados, West Indies , 1991 .

[78]  P. Sammarco Geographically specific recruitment and postsettlement mortality as influences on coral communities: The cross‐continental shelf transplant experiment , 1991 .

[79]  R. Ormond,et al.  Coral death from sewage and phosphate pollution at Aqaba, Red Sea , 1982 .

[80]  Harrison,et al.  Changes in gametogenesis and fecundity of acroporid corals that were exposed to elevated nitrogen and phosphorus during the ENCORE experiment. , 2000, Journal of experimental marine biology and ecology.

[81]  G. Likens,et al.  Technical Report: Human Alteration of the Global Nitrogen Cycle: Sources and Consequences , 1997 .

[82]  L. McCook Macroalgae, nutrients and phase shifts on coral reefs: scientific issues and management consequences for the Great Barrier Reef , 1999, Coral Reefs.

[83]  Evan N. Edinger,et al.  Normal Coral Growth Rates on Dying Reefs: Are Coral Growth Rates Good Indicators of Reef Health? , 2000 .

[84]  M. Waycott,et al.  Variation in biogeochemical parameters across intertidal seagrass meadows in the central Great Barrier Reef region. , 2005, Marine pollution bulletin.

[85]  O. Hoegh‐Guldberg,et al.  Kinetics of photoacclimation in corals , 2002, Oecologia.

[86]  R. H. Bray,et al.  DETERMINATION OF TOTAL, ORGANIC, AND AVAILABLE FORMS OF PHOSPHORUS IN SOILS , 1945 .

[87]  Z. Dinesen Patterns in the distribution of soft corals across the central Great Barrier Reef , 2004, Coral Reefs.

[88]  P. Harrison,et al.  Elevated levels of nitrogen and phosphorus reduce fertilisation success of gametes from scleractinian reef corals , 2001 .

[89]  C. Rogers Responses of coral reefs and reef organisms to sedimentation , 1990 .

[90]  P. Hutchings,et al.  Bioerosion of experimental substrates on high islands and atoll lagoons (French Polynesia) during 5 years of exposure , 2002 .

[91]  W. K. Purves Life: The Science of Biology , 1985 .

[92]  J. Michael Cross-shelf trends in skeletal density of the massive coral Porites lobata from the Great Barrier Reef , 2006 .

[93]  G. Powell,et al.  Relationships between porewater nutrients and seagrasses in a subtropical carbonate environment , 1992, Marine Biology.

[94]  Z. M. Leão,et al.  Nutrification impacts on coral reefs from northern Bahia, Brazil , 2000, Hydrobiologia.

[95]  K. Fabricius,et al.  Changes in octocoral communities and benthic cover along a water quality gradient in the reefs of Hong Kong. , 2006, Marine pollution bulletin.

[96]  William J. Kimmerer,et al.  Kaneohe Bay Sewage Diversion Experiment: Perspectives on Ecosystem Responses to Nutritional Perturbation , 1981 .

[97]  C. Roberts,et al.  Coral reefs: Health, hazards and history. , 1993, Trends in ecology & evolution.

[98]  M. Hay,et al.  Effects of nutrients versus herbivores on reef algae: A new method for manipulating nutrients on coral reefs , 1999 .

[99]  T. Done Phase shifts in coral reef communities and their ecological significance , 1992, Hydrobiologia.

[100]  L. McCook,et al.  Competition between corals and algae on coral reefs: a review of evidence and mechanisms , 2001, Coral Reefs.

[101]  Eva Abal,et al.  Seagrass habitats of northeast Australia: Models of key processes and controls , 2002 .

[102]  K. E. Fabriciusa,et al.  Effects of transparent exopolymer Particles and muddy terrigenous sediments on the survival of hard coral recruits , 2003 .

[103]  F. Marubini The physiological response of hermatypic corals to nutrient enrichment , 1996 .

[104]  Education Welfare.,et al.  Smoking and Health. Report of the Advisory Committee to the Surgeon General of the Public Health Service. , 1964 .

[105]  B. Morton Hong Kong's coral communities: Status, threats and management plans , 1994 .

[106]  K. Fabricius,et al.  Soft Corals and Sea Fans: A comprehensive guide to the tropical shallow water genera of the central-west Pacific, the Indian Ocean and the Red Sea , 2001 .

[107]  R. Richmond Effects of coastal runoff on coral reproduction , 1996 .

[108]  G. Schwarz Estimating the Dimension of a Model , 1978 .

[109]  J. Brodie,et al.  Exposure of Great Barrier Reef inner-shelf reefs to river-borne contaminants , 2003 .

[110]  M. Stafford-Smith Sediment-rejection efficiency of 22 species of Australian scleractinian corals , 1993 .

[111]  Abelson,et al.  Sediment as a possible source of food for corals , 1999 .

[112]  H. Lasker Sediment rejection by reef corals: The roles of behavior and morphology in Montastrea cavernosa (Linnaeus) , 1980 .

[113]  P. Hallock,et al.  Nutrient excess and the demise of coral reefs and carbonate platforms , 1986 .

[114]  K. Fabricius Reef invasion by soft corals: which taxa and which habitats? , 1998 .

[115]  A. Kerswell,et al.  PHYTOTOXICITY OF PHOTOSYSTEM II (PSII) HERBICIDES TO CORAL , 2003 .

[116]  J. Lanyon,et al.  Temporal changes in the abundance of some tropical intertidal seagrasses in North Queensland , 1995 .

[117]  S. Larned,et al.  Effects of herbivory, nutrient levels, and introduced algae on the distribution and abundance of the invasive macroalga Dictyosphaeria cavernosa in Kaneohe Bay, Hawaii , 2001, Coral Reefs.

[118]  Malcolm McCulloch,et al.  Coral record of increased sediment flux to the inner Great Barrier Reef since European settlement , 2003, Nature.

[119]  Z. Dubinsky,et al.  Ratio of Energy and Nutrient Fluxes Regulates Symbiosis between Zooxanthellae and Corals , 1994 .

[120]  S. V. Smith RESPONSES OF KANEOHE BAY, HAWAII, TO RELAXATION OF SEWAGE STRESS , 1981 .

[121]  K. Simkiss,et al.  PHOSPHATES AS CRYSTAL POISONS OF CALCIFICATION , 1964, Biological reviews of the Cambridge Philosophical Society.

[122]  P. Hallock,et al.  The role of nutrient availability in bioerosion: Consequences to carbonate buildups , 1988 .

[123]  R. Richmond Reproduction and Recruitment in Corals: Critical Links in the Persistence of Reefs , 1997 .

[124]  Russ Babcock,et al.  Effects of sedimentation on settlement of Acropora millepora , 2004, Coral Reefs.

[125]  A. Szmant Nutrient enrichment on coral reefs: Is it a major cause of coral reef decline? , 2002 .

[126]  Z. Dubinsky,et al.  Evolution and zoogeography of coral reefs , 1990 .

[127]  D. Bulthuis,et al.  Effects of in situ nitrogen and phosphorus enrichment of the sediments on the seagrass Heterozostera tasmanica (Martens ex Aschers.) den Hartog in Western Port, Victoria, Australia , 1981 .

[128]  K. Fabricius,et al.  Synergistic effects of diuron and sedimentation on photosynthesis and survival of crustose coralline algae. , 2005, Marine pollution bulletin.

[129]  K. Fabricius,et al.  Shifting roles of heterotrophy and autotrophy in coral energetics under varying turbidity. , 2000, Journal of experimental marine biology and ecology.

[130]  P. Falkowski,et al.  The effect of external nutrient resources on the population dynamics of zooxanthellae in a reef coral , 1989, Proceedings of the Royal Society of London. B. Biological Sciences.

[131]  W. Wiebe,et al.  Latitudinal limits of coral reef growth , 1983 .

[132]  J. Brodie,et al.  Monitoring chlorophyll in the Great Barrier Reef lagoon: trends and variability , 1997 .

[133]  Lauretta Burke,et al.  Reefs at Risk in Southeast Asia , 2002 .

[134]  R. Pastorok,et al.  Effects of sewage pollution on coral-reef communities , 1985 .

[135]  K. Fabricius Effects of irradiance, flow, and colony pigmentation on the temperature microenvironment around corals: Implications for coral bleaching? , 2006 .

[136]  P. Falkowski,et al.  Light-shade adaptation of Stylophora pistillata, a hermatypic coral from the Gulf of Eilat , 1981, Nature.

[137]  T. Done,et al.  Coral communities and reef growth in the southern Great Barrier Reef , 1997, Coral Reefs.

[138]  E. Wolanski,et al.  Trapping of fine sediment in a semi-enclosed bay, Palau, Micronesia , 2003 .

[139]  B. Rinkevich,et al.  Effects of particulate matter released by a fish farm (Eilat, Red Sea) on survival and growth of Stylophora pistillata coral nubbins. , 2003, Marine Pollution Bulletin.

[140]  Yossi Loya,et al.  The Coral Reefs of Eilat — Past, Present and Future: Three Decades of Coral Community Structure Studies , 2004 .

[141]  Stimson,et al.  Nitrogen efflux from the sediments of a subtropical bay and the potential contribution to macroalgal nutrient requirements. , 2000, Journal of experimental marine biology and ecology.

[142]  J. Gilmour,et al.  Experimental investigation into the effects of suspended sediment on fertilisation, larval survival and settlement in a scleractinian coral , 1999 .

[143]  B. Schaffelke PARTICULATE ORGANIC MATTER AS AN ALTERNATIVE NUTRIENT SOURCE FOR TROPICAL SARGASSUM SPECIES (FUCALES, PHAEOPHYCEAE) , 1999 .

[144]  W. Dennison,et al.  Seagrass survival during pulsed turbidity events : the effects of light deprivation on the seagrasses Halodule pinifolia and Halophila ovalis , 1999 .

[145]  R. Bak Lethal and sublethal effects of dredging on reef corals , 1978 .

[146]  O. Hoegh‐Guldberg,et al.  Variation in coral photosynthesis, respiration and growth characteristics in contrasting light microhabitats: an analogue to plants in forest gaps and understoreys? , 2003 .

[147]  J. Bruno,et al.  Nutrient enrichment can increase the severity of coral diseases , 2003 .

[148]  P. Falkowski,et al.  Light and the Bioenergetics of a Symbiotic Coral , 1984 .

[149]  M. Hill,et al.  Data analysis in community and landscape ecology , 1987 .

[150]  H. Guzman,et al.  Effects of chronic oil-sediment pollution on the reproduction of the Caribbean reef coral Siderastrea siderea☆ , 1993 .

[151]  A. Hattori,et al.  Growth and organic production of eelgrass (Zostera marina L.) in temperate waters of the Pacific coast of Japan. III. The kinetics of nitrogen uptake , 1982 .

[152]  F. Short,et al.  Nitrogen Uptake by Leaves and Roots of the Seagrass Zostera marina L. , 1984 .

[153]  W. Dennison,et al.  Seagrass depth range and water quality in southern Moreton Bay, Queensland, Australia , 1996 .

[154]  William J. Skirving,et al.  A comparison of the 1998 and 2002 coral bleaching events on the Great Barrier Reef: spatial correlation, patterns, and predictions , 2004, Coral Reefs.

[155]  R. Coles,et al.  Seagrasses between Cape York and Hervey Bay, Queensland, Australia , 1993 .

[156]  Len J. McKenzie,et al.  Flood related loss and recovery of intertidal seagrass meadows in southern Queensland, Australia , 2004 .

[157]  O. Nairn Seasonal responses of a fringing reef community to eutrophication (Reunion Island, Western Indian Ocean) , 1993 .

[158]  Britta Schaffelke,et al.  Short-term nutrient pulses as tools to assess responses of coral reef macroalgae to enhanced nutrient availability , 1999 .

[159]  C. Rogers The effect of shading on coral reef structure and function , 1979 .

[160]  W. Dennison,et al.  ENCORE: the effect of nutrient enrichment on coral reefs. Synthesis of results and conclusions. , 2001, Marine pollution bulletin.

[161]  Y. Loya,et al.  Bioerosion of coral reefs‐A chemical approach , 1991 .

[162]  C. Ferrier‐Pagès,et al.  Uptake of ammonium by the scleractinian coral Stylophora pistillata: Effect of feeding, light, and ammonium concentrations , 2002 .

[163]  A. Tudhope,et al.  EVALUATION OF THE ENVIRONMENTAL-IMPACT OF DREDGING ON INTERTIDAL CORAL REEFS AT KO-PHUKET, THAILAND, USING ECOLOGICAL AND PHYSIOLOGICAL-PARAMETERS , 1990 .

[164]  R. Babcock,et al.  Effects of sedimentation on coral settlement and survivorship , 2002 .

[165]  G. De’ath,et al.  Environmental factors associated with the spatial distribution of crustose coralline algae on the Great Barrier Reef , 2001, Coral Reefs.

[166]  T. Hughes,et al.  RECRUITMENT FAILURE, LIFE HISTORIES, AND LONG‐TERM DECLINE OF CARIBBEAN CORALS , 2000 .

[167]  S. V. Smith,et al.  Response of coral reef cryptofaunal communities to food and space , 1983, Coral Reefs.

[168]  B. Hatcher A maritime accident provides evidence for alternate stable states in benthic communities on coral reefs , 1984, Coral Reefs.

[169]  G. Hodgson Tetracycline reduces sedimentation damage to corals , 1990 .

[170]  W. Giesen,et al.  Sabaki River sediment load and coral stress: correlation between sediments and condition of the Malindi-Watamu reefs in Kenya (Indian Ocean) , 1993 .

[171]  Brian G. Wolff,et al.  Forecasting Agriculturally Driven Global Environmental Change , 2001, Science.

[172]  M. Nyström,et al.  Effects of elevated seawater temperature and nitrate enrichment on the branching coral Porites cylindrica in the absence of particulate food , 2003 .

[173]  Britta Schaffelke,et al.  Water quality in the Great Barrier Reef region: responses of mangrove, seagrass and macroalgal communities. , 2005, Marine pollution bulletin.

[174]  S. Jameson,et al.  Charting a course toward diagnostic monitoring: A continuing review of coral reef attributes and a research strategy for creating coral reef indexes of biotic integrity , 2001 .

[175]  Barnes,et al.  Environmental controls on growth of the massive coral Porites. , 2000, Journal of experimental marine biology and ecology.

[176]  N. Stambler,et al.  Effect of ammonium enrichment on respiration, zooxanthellar densities, and pigment concentrations in two species of Hawaiian corals , 1994 .

[177]  P. Falkowski,et al.  Absorption and utilization of radiant energy by light- and shade-adapted colonies of the hermatypic coral Stylophora pistillata , 1984, Proceedings of the Royal Society of London. Series B. Biological Sciences.

[178]  L. McCook,et al.  The effects of nutrients and herbivory on competition between a hard coral (Porites cylindrica) and a brown alga (Lobophora variegata) , 2002 .

[179]  O. Hoegh‐Guldberg Climate change, coral bleaching and the future of the world's coral reefs , 1999 .

[180]  Miles Furnas,et al.  Catchments and Corals: Terrestrial Runoff to the Great Barrier Reef , 2003 .

[181]  S. Purcell Association of epilithic algae with sediment distribution on a windward reef in the northern Great Barrier Reef, Australia , 2000 .

[182]  K. Fabricius Effects of terrestrial runoff on the ecology of corals and coral reefs: review and synthesis. , 2005, Marine pollution bulletin.

[183]  G. E. Rayment,et al.  Australian laboratory handbook of soil and water chemical methods. , 1992 .

[184]  F. Sander,et al.  Effects of eutrophication on reef-building corals , 1987 .

[185]  S. Ward,et al.  Impact of elevated ammonium on reproduction in two Hawaiian scleractinian corals with different life history patterns. , 2002, Marine pollution bulletin.

[186]  C. Mundy,et al.  Coral recruitment: Consequences of settlement choice for early growth and survivorship in two scleractinians , 1996 .

[187]  G. De’ath,et al.  ECOLOGICAL ASSESSMENT OF A COMPLEX NATURAL SYSTEM: A CASE STUDY FROM THE GREAT BARRIER REEF , 1998 .

[188]  M. Björk,et al.  Coralline algae, important coral reef builders threatened by pollution , 1995 .

[189]  R. Grosberg,et al.  Climate Change, Human Impacts, and the Resilience of Coral Reefs , 2003, Science.

[190]  L. McCook Competition between corals and algal turfs along a gradient of terrestrial influence in the nearshore central Great Barrier Reef , 2001, Coral Reefs.

[191]  Mark E. Warner,et al.  Seasonal patterns of tissue biomass and densities of symbiotic dinoflagellates in reef corals and relation to coral bleaching , 2000 .

[192]  E. Wolanski,et al.  Nepheloid layer dynamics in coastal waters of the great Barrier Reef, Australia , 2003 .

[193]  E. Edinger,et al.  Reef degradation and coral biodiversity in indonesia: Effects of land-based pollution, destructive fishing practices and changes over time , 1998 .

[194]  L. McCook,et al.  Mud, Marine Snow and Coral Reefs , 2003, American Scientist.

[195]  John K. Volkman,et al.  Guidelines for ecological risk assessment of marine fish aquaculture : prepared at the NOAA Fisheries Service Manchester Research Station International Workshop, April 11-14, 2005 , 2005 .

[196]  C. Duarte,et al.  Chapter 7 – Methods for the measurement of seagrass abundance and depth distribution , 2001 .

[197]  A. Mccomb,et al.  Productivity and nutrient limitation , 1989 .

[198]  Z. Dubinsky,et al.  Marine pollution and coral reefs , 1996 .

[199]  P. Cuet,et al.  The effects of eutrophication-related alterations to coral reef communities on agents and rates of bioerosion (Reunion Island, Indian Ocean) , 2002, Coral Reefs.

[200]  J. Lucas,et al.  Selective feeding by larvae of the crown-of-thorns starfish, Acanthaster planci (L.) , 1997, Coral Reefs.

[201]  J. Connell,et al.  A 30-year study of coral abundance, recruitment, and disturbance at several scales in space and time , 1997 .

[202]  T. McClanahan,et al.  The role of inorganic nutrients and herbivory in controlling microbioerosion of carbonate substratum , 2005, Coral Reefs.

[203]  B. Lapointe,et al.  The relative importance of nutrient enrichment and herbivory on macroalgal communities near Norman's Pond Cay, Exumas Cays, Bahamas: a "natural" enrichment experiment , 2004 .

[204]  A. Harland,et al.  Lipid content of some Caribbean corals in relation to depth and light , 1992 .

[205]  Glenn De'ath,et al.  Biodiversity on the Great Barrier Reef: Large-scale patterns and turbidity-related local loss of soft coral taxa. Chapter 9 , 2001 .

[206]  J. B. Lewis Experimental tests of suspension feeding in Atlantic reef corals , 1976 .

[207]  K. Fabricius,et al.  Depletion of suspended particulate matter over coastal reef communities dominated by zooxanthellate soft corals , 2000 .

[208]  N. Marbà,et al.  Growth patterns of Western Mediterranean seagrasses:species-specific responses to seasonal forcing , 1996 .

[209]  J. Ray The Effects of Petroleum Hydrocarbons on Corals , 1981 .

[210]  P. Ridd,et al.  Factors controlling suspended sediment on inner-shelf coral reefs, Townsville, Australia , 1995, Coral Reefs.

[211]  Z. Dubinsky,et al.  Effects of Nutrient Enrichment and Water Motion on the Coral Pocillopora damicornis , 1991 .

[212]  D. E. Baker Interpreting soil analyses - for agricultural land use in Queensland , 1993 .

[213]  Leonard J. McKenzie,et al.  Seasonal changes in biomass and shoot characteristics of a Zostera capricorni Aschers. Dominant meadow in Cairns Harbour, Northern Queensland , 1994 .

[214]  F. Marubini,et al.  Bicarbonate addition promotes coral growth , 1999 .

[215]  D. Haynes,et al.  Water quality in the Great Barrier Reef World Heritage Area: past perspectives, current issues and new research directions. , 2000 .

[216]  K. Fabricius,et al.  Photophysiological stress in scleractinian corals in response to short-term sedimentation , 2003 .

[217]  R. Ormond,et al.  Sediment-rejection mechanisms of 42 species of Australian Scleractinian corals , 1992 .

[218]  P. Sammarco,et al.  Large-scale patterns in internal bioerosion of Porites: cross continental shelf trends on the Great Barrier Reef , 1990 .

[219]  D. Klumpp,et al.  Nutrient-limited growth of the coral reef macroalga Sargassum baccularia and experimental growth enhancement by nutrient addition in continuous flow culture , 1998 .

[220]  Alan Mitchell,et al.  Nutrient inputs into the central Great Barrier Reef (Australia) from subsurface intrusions of Coral Sea waters: a two-dimensional displacement model , 1996 .

[221]  O. Hoegh‐Guldberg,et al.  Influence of the population density of zooxanthellae and supply of ammonium on the biomass and metabolic characteristics of the reef corals Seriatopora hystrix and Stylophora pistillata , 1989 .

[222]  J. Brodie,et al.  Flood plumes in the Great Barrier Reef : spatial and temporal patterns in composition and distribution , 2001 .

[223]  M. Hixon Effects of Reef Fishes on Corals and Algae , 1997 .

[224]  Y. Loya,et al.  Nutrient enrichment caused by in situ fish farms at Eilat, Red Sea is detrimental to coral reproduction. , 2004, Marine pollution bulletin.

[225]  T. Huntington,et al.  Environmental Status of Yemen's Gulf of Aden Coast Determined from Rapid Field Assessment and Satellite Imagery , 2003 .

[226]  Y. Monbet,et al.  Control of phytoplankton biomass in estuaries: A comparative analysis of microtidal and macrotidal estuaries , 1992 .

[227]  W. Dennison,et al.  Tissue nutrient content of Gracilaria spp. (Rhodophyta) and water quality along an estuarine gradient , 1995 .

[228]  G. De’ath,et al.  Changes in algal, coral and fish assemblages along water quality gradients on the inshore Great Barrier Reef. , 2005, Marine pollution bulletin.

[229]  C. Birkeland,et al.  Terrestrial runoff as a cause of outbreaks of Acanthaster planci (Echinodermata: Asteroidea) , 1982 .

[230]  G. De’ath,et al.  The effects of flow, depth and slope on cover of soft coral taxa and growth forms on Davies Reef, Great Barrier Reef , 1997 .

[231]  D. M. Williams Patterns in the distribution of fish communities across the Central Great Barrier Reef , 2004, Coral Reefs.

[232]  Robert L. Folk,et al.  Petrology of Sedimentary Rocks , 1974 .

[233]  B. Rinkevich Do reproduction and regeneration in damaged corals compete for energy allocation , 1996 .

[234]  T. Goreau,et al.  Changes in zooxanthellae density, morphology, and mitotic index in hermatypic corals and anemones exposed to cyanide. , 2003, Marine pollution bulletin.

[235]  D. Bellwood,et al.  Confronting the coral reef crisis , 2004, Nature.

[236]  Christian Lott,et al.  Sedimentation stress in a scleractinian coral exposed to terrestrial and marine sediments with contrasting physical, organic and geochemical properties , 2006 .

[237]  T. Tomascik Growth rates of two morphotypes of Montastrea annularis along a eutrophication gradient, Barbados, W.I. , 1990 .

[238]  A. Larkum,et al.  The standing stock, growth and shoot production of Zostera capricorni aschers. in Botany Bay, New South Wales, Australia , 1984 .

[239]  M. Hemminga,et al.  The balance of nutrient losses and gains in seagrass meadows , 1991 .

[240]  J. Vermaat,et al.  Partial Mortality in Porites Corals: Variation among Philippine Reefs , 2001 .

[241]  M. Risk,et al.  Increase in Cliona delitrix Infestation of Montastrea cavernosa Heads on an Organically Polluted Portion of the Grand Cayman Fringing Reef , 1985 .

[242]  Adrian E. Raftery,et al.  Approximate Bayes factors for generalized linear models , 1988 .

[243]  F. Short Effects of sediment nutrients on seagrasses: literature review and mesocosm experiment , 1987 .

[244]  E. Sala,et al.  Algal growth and species composition under experimental control of herbivory, phosphorus and coral abundance in Glovers Reef, Belize. , 2002, Marine pollution bulletin.

[245]  P. Cuet,et al.  Nutrient-rich groundwater impact on benthic communities of La Saline fringing reef (Reunion Island, Indian Ocean): preliminary results. , 1988 .

[246]  T. Hughes,et al.  DENSITY-DEPENDENT DYNAMICS OF SOFT CORAL AGGREGATIONS: THE SIGNIFICANCE OF CLONAL GROWTH AND FORM' , 1996 .

[247]  B. Willis,et al.  Comparative analysis of energy allocation to tissue and skeletal growth in corals , 2002 .

[248]  J. Porter,et al.  Disease and immunity in Caribbean and Indo-Pacific zooxanthellate corals , 2004 .

[249]  C. Mundy,et al.  Role of light intensity and spectral quality in coral settlement: implications for depth-dependent settlement? , 1998 .

[250]  B. Rinkevich,et al.  Survival, growth and gonad development of two hermatypic corals subjected to in situ fish-farm nutrient enrichment , 2003 .

[251]  Mark Spalding,et al.  World atlas of coral reefs , 2001 .

[252]  A Preen,et al.  Impacts of dugong foraging on seagrass habitats: observational and experimental evidence for cultivation grazing , 1995 .

[253]  B. Willis,et al.  Effects of algal turfs and sediment on coral settlement. , 2005, Marine pollution bulletin.

[254]  U. Schreiber,et al.  Effects of herbicides diuron and atrazine on corals of the Great Barrier Reef, Australia , 2003 .

[255]  H. Kirkman,et al.  The seagrass communities of Moreton Bay, Queensland , 1975 .

[256]  R. Grigg,et al.  Coral reefs in an urban embayment in Hawaii: a complex case history controlled by natural and anthropogenic stress , 1995, Coral Reefs.

[257]  M. Atkinson,et al.  Effects of lowered pH and elevated nitrate on coral calcification , 1999 .

[258]  R. Dodge,et al.  Coral Growth Related to Resuspension of Bottom Sediments , 1974, Nature.

[259]  F. Short The seagrass, Zostera Marina L.: Plant morphology and bed structure in relation to sediment ammonium in izembek lagoon, Alaska , 1983 .

[260]  S. Blake,et al.  Coral assemblages and physico-chemical characteristics of the Whitsunday Islands : evidence of recent community changes , 1999 .

[261]  G. M. Branch,et al.  Effects of sediment on the energy budgets of four scleractinian (Bourne 1900) and five alcyonacean (Lamouroux 1816) corals , 1995 .

[262]  Steven L. Miller,et al.  Algal blooms on coral reefs: What are the causes? , 1999 .

[263]  G. Hodgson Sediment and the settlement of larvae of the reef coralPocillopora damicornis , 1990, Coral Reefs.

[264]  A. Knap,et al.  Comparative Acute Toxicity of Herbicides to Photosynthesis of Coral Zooxanthellae , 2003, Bulletin of environmental contamination and toxicology.

[265]  T. Done,et al.  Precursors for resilience in coral communities in a warming climate: a belief network approach , 2005 .

[266]  Hans Brix,et al.  Uptake and translocation of phosphorus in eelgrass (Zostera marina) , 1985 .

[267]  J. Mellors Sediment and nutrient dynamics in coastal intertidal seagrass of north eastern tropical Australia , 2003 .

[268]  J. Burkholder,et al.  Review of nitrogen and phosphorus metabolism in seagrasses. , 2000, Journal of experimental marine biology and ecology.

[269]  T. Done,et al.  Patterns in the distribution of coral communities across the central Great Barrier Reef , 2004, Coral Reefs.

[270]  D. B. Carlon Production and supply of larvae as determinants of zonation in a brooding tropical coral , 2002 .