Genomes of early-diverging streptophyte algae shed light on plant terrestrialization
暂无分享,去创建一个
Sunil Kumar Sahu | Huanming Yang | Jian Wang | G. Wong | Y. van de Peer | M. Melkonian | Shifeng Cheng | Xin Liu | Xun Xu | Yue Chang | H. Yang | Huan Liu | Yue Song | Hongli Wang | B. Melkonian | Zehra Çebi | Bo Song | Xun Xu | Linzhou Li | Sibo Wang | Haoyuan Li | Yan Xu | Hongping Liang | Tanja Reder | Sebastian Wittek | Xin Liu | Wenfei Xian | Jian Wang | Morten Peterson | Y. Van de Peer | Xin Liu | Xin Liu
[1] G. Wong,et al. Evolution of chloroplast retrograde signaling facilitates green plant adaptation to land , 2019, Proceedings of the National Academy of Sciences.
[2] J. Bowman,et al. Something ancient and something neofunctionalized-evolution of land plant hormone signaling pathways. , 2019, Current opinion in plant biology.
[3] Binbin Huang,et al. Genome-wide identification, phylogeny analysis, expression profiling, and determination of protein-protein interactions of the LEUNIG gene family members in tomato. , 2018, Gene.
[4] Xiaofei Wang,et al. Expressional characterization of galacturonosyltransferase-like gene family in Eucalyptus grandis implies a role in abiotic stress responses , 2018, Tree Genetics & Genomes.
[5] C. Delwiche,et al. The Chara Genome: Secondary Complexity and Implications for Plant Terrestrialization , 2018, Cell.
[6] J. Bowman,et al. Evolutionary history of HOMEODOMAIN LEUCINE ZIPPER transcription factors during plant transition to land. , 2018, The New phytologist.
[7] L. Del-Bem,et al. Xyloglucan evolution and the terrestrialization of green plants. , 2018, The New phytologist.
[8] B. Curtis,et al. Embryophyte stress signaling evolved in the algal progenitors of land plants , 2018, Proceedings of the National Academy of Sciences.
[9] I. Mila,et al. Auxin Response Factors (ARFs) are potential mediators of auxin action in tomato response to biotic and abiotic stress (Solanum lycopersicum) , 2018, PloS one.
[10] G. Wong,et al. Identification of an algal xylan synthase indicates that there is functional orthology between algal and plant cell wall biosynthesis , 2018, The New phytologist.
[11] S. Rensing,et al. Comprehensive Genome-Wide Classification Reveals That Many Plant-Specific Transcription Factors Evolved in Streptophyte Algae , 2017, Genome biology and evolution.
[12] Christian R. Boehm,et al. Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome , 2017, Cell.
[13] Juying Yan,et al. Insights into the red algae and eukaryotic evolution from the genome of Porphyra umbilicalis (Bangiophyceae, Rhodophyta) , 2017, Proceedings of the National Academy of Sciences.
[14] H. Ohta,et al. Primitive Auxin Response without TIR1 and Aux/IAA in the Charophyte Alga Klebsormidium nitens1[OPEN] , 2017, Plant Physiology.
[15] J. Thompson,et al. Insights into Ciliary Genes and Evolution from Multi-Level Phylogenetic Profiling , 2017, Molecular biology and evolution.
[16] L. Katz,et al. Amoebozoans Are Secretly but Ancestrally Sexual: Evidence for Sex Genes and Potential Novel Crossover Pathways in Diverse Groups of Amoebae , 2017, Genome biology and evolution.
[17] Guan-Zhu Han. Evolution of jasmonate biosynthesis and signaling mechanisms. , 2016, Journal of experimental botany.
[18] C. Delwiche,et al. Transcriptome Profiling of the Green Alga Spirogyra pratensis (Charophyta) Suggests an Ancestral Role for Ethylene in Cell Wall Metabolism, Photosynthesis, and Abiotic Stress Responses1[OPEN] , 2016, Plant Physiology.
[19] J. Archibald,et al. Streptophyte Terrestrialization in Light of Plastid Evolution. , 2016, Trends in plant science.
[20] Ø. Moestrup,et al. Why Plants Were Terrestrial from the Beginning. , 2016, Trends in plant science.
[21] C. Delwiche,et al. The Evolutionary Origin of a Terrestrial Flora , 2015, Current Biology.
[22] Dennis W. Stevenson,et al. Algal ancestor of land plants was preadapted for symbiosis , 2015, Proceedings of the National Academy of Sciences.
[23] Evgeny M. Zdobnov,et al. BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs , 2015, Bioinform..
[24] G. Wong,et al. Phytochrome diversity in green plants and the origin of canonical plant phytochromes , 2015, Nature Communications.
[25] B. Mueller‐Roeber,et al. Growth-Regulating Factors (GRFs): A Small Transcription Factor Family with Important Functions in Plant Biology. , 2015, Molecular plant.
[26] C. Delwiche,et al. Conservation of ethylene as a plant hormone over 450 million years of evolution , 2015, Nature Plants.
[27] Saravanaraj N. Ayyampalayam,et al. Phylotranscriptomic analysis of the origin and early diversification of land plants , 2014, Proceedings of the National Academy of Sciences.
[28] K. Yamaguchi-Shinozaki,et al. ABA-dependent and ABA-independent signaling in response to osmotic stress in plants. , 2014, Current opinion in plant biology.
[29] Sanjay Kumar,et al. RNA-seq-mediated transcriptome analysis of actively growing and winter dormant shoots identifies non-deciduous habit of evergreen tree tea during winters , 2014, Scientific Reports.
[30] M. Ikeuchi,et al. Klebsormidium flaccidum genome reveals primary factors for plant terrestrial adaptation , 2014, Nature Communications.
[31] Carolyn J. Lawrence-Dill,et al. MAKER-P: A Tool Kit for the Rapid Creation, Management, and Quality Control of Plant Genome Annotations1[W][OPEN] , 2013, Plant Physiology.
[32] D. Domozych,et al. Classification, Naming and Evolutionary History of Glycosyltransferases from Sequenced Green and Red Algal Genomes , 2013, PloS one.
[33] Cole Trapnell,et al. TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions , 2013, Genome Biology.
[34] David W. Cheung,et al. SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler , 2012, GigaScience.
[35] James Leebens-Mack,et al. Evaluating Methods for Isolating Total RNA and Predicting the Success of Sequencing Phylogenetically Diverse Plant Transcriptomes , 2012, PloS one.
[36] Sergey I. Nikolenko,et al. SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing , 2012, J. Comput. Biol..
[37] P. Brewer,et al. The trihelix family of transcription factors--light, stress and development. , 2012, Trends in plant science.
[38] C. Delwiche,et al. Broad Phylogenomic Sampling and the Sister Lineage of Land Plants , 2012, PloS one.
[39] Andrew J. Heidel,et al. Origin of land plants: Do conjugating green algae hold the key? , 2011, BMC Evolutionary Biology.
[40] W. Pirovano,et al. Scaffolding pre-assembled contigs using SSPACE , 2011, Bioinform..
[41] B. Petersen,et al. Glycosyltransferases of the GT77 Family , 2010 .
[42] Susan R. Wessler,et al. MITE-Hunter: a program for discovering miniature inverted-repeat transposable elements from genomic sequences , 2010, Nucleic acids research.
[43] Jiří Friml,et al. The PIN-FORMED (PIN) protein family of auxin transporters , 2009, Genome Biology.
[44] Thomas R. Bürglin,et al. A Comprehensive Classification and Evolutionary Analysis of Plant Homeobox Genes , 2009, Molecular biology and evolution.
[45] Jinling Huang,et al. The cellulose synthase superfamily in fully sequenced plants and algae , 2009, BMC Plant Biology.
[46] B. Marin,et al. Streptophyte algae and the origin of embryophytes. , 2009, Annals of botany.
[47] Nansheng Chen,et al. Using RepeatMasker to Identify Repetitive Elements in Genomic Sequences , 2009, Current protocols in bioinformatics.
[48] Jonathan D. G. Jones,et al. Role of plant hormones in plant defence responses , 2009, Plant Molecular Biology.
[49] F. Zechman,et al. Gain and loss of elongation factor genes in green algae , 2009, BMC Evolutionary Biology.
[50] Stefan Kurtz,et al. LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons , 2008, BMC Bioinformatics.
[51] F. Ariel,et al. The true story of the HD-Zip family. , 2007, Trends in plant science.
[52] C. Lemieux,et al. A clade uniting the green algae Mesostigma viride and Chlorokybus atmophyticus represents the deepest branch of the Streptophyta in chloroplast genome-based phylogenies , 2007 .
[53] Burkhard Morgenstern,et al. AUGUSTUS: ab initio prediction of alternative transcripts , 2006, Nucleic Acids Res..
[54] L. Jouanin,et al. Plant glycoside hydrolases involved in cell wall polysaccharide degradation. , 2006, Plant physiology and biochemistry : PPB.
[55] M. Melkonian,et al. EST analysis of the scaly green flagellate Mesostigma viride (Streptophyta): Implications for the evolution of green plants (Viridiplantae) , 2006, BMC Plant Biology.
[56] Jitendra P Khurana,et al. Bmc Plant Biology Molecular Characterization and Differential Expression of Cytokinin-responsive Type-a Response Regulators in Rice (oryza Sativa) , 2005 .
[57] W. G. Brenner,et al. Immediate-early and delayed cytokinin response genes of Arabidopsis thaliana identified by genome-wide expression profiling reveal novel cytokinin-sensitive processes and suggest cytokinin action through transcriptional cascades. , 2005, The Plant journal : for cell and molecular biology.
[58] Mark Borodovsky,et al. GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses , 2005, Nucleic Acids Res..
[59] Yuji Inagaki,et al. A class of eukaryotic GTPase with a punctate distribution suggesting multiple functional replacements of translation elongation factor 1alpha. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[60] Nansheng Chen,et al. Using RepeatMasker to Identify Repetitive Elements in Genomic Sequences , 2009, Current protocols in bioinformatics.
[61] W. J. Kent,et al. BLAT--the BLAST-like alignment tool. , 2002, Genome research.
[62] Peter R. Crane,et al. The origin and early evolution of plants on land , 1997, Nature.
[63] Geoffrey I. McFadden,et al. Use of Hepes buffer for microalgal culture media and fixation for electron microscopy , 1986 .
[64] S. Rogers,et al. Extraction of DNA from milligram amounts of fresh, herbarium and mummified plant tissues , 1985, Plant Molecular Biology.
[65] Martha E. Cook,et al. Chlorokybophyceae, Klebsormidiophyceae, Coleochaetophyceae , 2016 .
[66] Monika S. Doblin,et al. RESEARCH IN CONTEXT: PART OF A SPECIAL ISSUE ON PLANT CELL WALLS Evidence for land plant cell wall biosynthetic mechanisms in charophyte green algae , 2014 .
[67] Jiří Friml,et al. Origin and evolution of PIN auxin transporters in the green lineage. , 2013, Trends in plant science.