recount-brain: a curated repository of human brain RNA-seq datasets metadata
暂无分享,去创建一个
Sean Davis | Leonardo Collado-Torres | Andrew E. Jaffe | Jeffrey T. Leek | Michael Wilson | Shannon E. Ellis | Ashkaun Razmara | Shannon E Ellis | Dustin J Sokolowski | J. Leek | A. Jaffe | L. Collado-Torres | S. Ellis | Dustin J. Sokolowski | A. Razmara | Sean R. Davis | Michael W. Wilson
[1] Yi Xing,et al. Transcriptome-wide Discovery of microRNA Binding Sites in Human Brain , 2014, Neuron.
[2] Guangchuang Yu,et al. clusterProfiler: an R package for comparing biological themes among gene clusters. , 2012, Omics : a journal of integrative biology.
[3] D. Haussler,et al. The Somatic Genomic Landscape of Glioblastoma , 2013, Cell.
[4] B. Langmead,et al. Cloud computing for genomic data analysis and collaboration , 2018, Nature Reviews Genetics.
[5] Jj Allaire,et al. Web Application Framework for R , 2016 .
[6] Mark D. Robinson,et al. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data , 2009, Bioinform..
[7] Matthew E. Ritchie,et al. limma powers differential expression analyses for RNA-sequencing and microarray studies , 2015, Nucleic acids research.
[8] Joshua M. Korn,et al. Comprehensive genomic characterization defines human glioblastoma genes and core pathways , 2008, Nature.
[9] Z. Weng,et al. RNA Sequence Analysis of Human Huntington Disease Brain Reveals an Extensive Increase in Inflammatory and Developmental Gene Expression , 2015, PloS one.
[10] Charity W. Law,et al. voom: precision weights unlock linear model analysis tools for RNA-seq read counts , 2014, Genome Biology.
[11] G. Cochrane,et al. The International Nucleotide Sequence Database Collaboration , 2011, Nucleic Acids Res..
[12] Leonardo Collado-Torres,et al. recount workflow: Accessing over 70,000 human RNA-seq samples with Bioconductor , 2017, F1000Research.
[13] S. Lewis,et al. Uberon, an integrative multi-species anatomy ontology , 2012, Genome Biology.
[14] Davis J. McCarthy,et al. Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation , 2012, Nucleic acids research.
[15] Michael Snyder,et al. Integrated systems analysis reveals a molecular network underlying autism spectrum disorders , 2014, Molecular systems biology.
[16] Rasko Leinonen,et al. The sequence read archive: explosive growth of sequencing data , 2011, Nucleic Acids Res..
[17] Leonardo Collado-Torres,et al. RNA-seq transcript quantification from reduced-representation data in recount2 , 2018, bioRxiv.
[18] S. Horvath,et al. Transcriptomic Analysis of Autistic Brain Reveals Convergent Molecular Pathology , 2011, Nature.
[19] Evan Bolton,et al. Database resources of the National Center for Biotechnology Information , 2017, Nucleic Acids Res..
[20] Hadley Wickham,et al. ggplot2 - Elegant Graphics for Data Analysis (2nd Edition) , 2017 .
[21] M. Cairns,et al. Transcriptome Sequencing Revealed Significant Alteration of Cortical Promoter Usage and Splicing in Schizophrenia , 2012, PloS one.
[22] Javad Golji,et al. Integrative analyses of proteomics and RNA transcriptomics implicate mitochondrial processes, protein folding pathways and GWAS loci in Parkinson disease , 2015, BMC Medical Genomics.
[23] Shannon E. Ellis,et al. Improving the value of public RNA-seq expression data by phenotype prediction , 2017, bioRxiv.
[24] David Landsman,et al. Workflow and web application for annotating NCBI BioProject transcriptome data , 2017, Database J. Biol. Databases Curation.
[25] Hideaki Sugawara,et al. The Sequence Read Archive , 2010, Nucleic Acids Res..
[26] Lawrence A. Donehower,et al. The somatic genomic landscape of chromophobe renal cell carcinoma. , 2014, Cancer cell.
[27] J. Zhou,et al. Overexpression of SMC4 activates TGFβ/Smad signaling and promotes aggressive phenotype in glioma cells , 2017, Oncogenesis.
[28] David P. Kreil,et al. A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control consortium , 2014, Nature Biotechnology.
[29] Davide Castelvecchi,et al. Google unveils search engine for open data , 2018, Nature.
[30] C. Hutter,et al. The Cancer Genome Atlas: Creating Lasting Value beyond Its Data , 2018, Cell.
[31] Jeffrey T Leek,et al. Reproducible RNA-seq analysis using recount2 , 2017, Nature Biotechnology.
[32] Jun S. Liu,et al. The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans , 2015, Science.
[33] Abdullah M. Khamis,et al. Regional differences in gene expression and promoter usage in aged human brains , 2013, Neurobiology of Aging.
[34] Mikhail S. Gelfand,et al. Neanderthal ancestry drives evolution of lipid catabolism in contemporary Europeans , 2014, Nature Communications.
[35] Csongor Nyulas,et al. BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications , 2011, Nucleic Acids Res..
[36] M. Faghihi,et al. Transcriptomics Profiling of Alzheimer’s Disease Reveal Neurovascular Defects, Altered Amyloid-β Homeostasis, and Deregulated Expression of Long Noncoding RNAs , 2015, Journal of Alzheimer's disease : JAD.
[37] Steven J. M. Jones,et al. Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas. , 2015, The New England journal of medicine.
[38] Peter Canoll,et al. MRI-localized biopsies reveal subtype-specific differences in molecular and cellular composition at the margins of glioblastoma , 2014, Proceedings of the National Academy of Sciences.
[39] Gregory D. Schuler,et al. Database resources of the National Center for Biotechnology Information: update , 2004, Nucleic acids research.
[40] J. Akers,et al. RNA-seq of 272 gliomas revealed a novel, recurrent PTPRZ1-MET fusion transcript in secondary glioblastomas , 2014, Genome research.
[41] Abhinav Nellore,et al. Snaptron: querying splicing patterns across tens of thousands of RNA-seq samples , 2017, Bioinform..
[42] AnHai Doan,et al. MetaSRA: normalized human sample-specific metadata for the Sequence Read Archive , 2017, Bioinform..
[43] Bronwen L. Aken,et al. GENCODE: The reference human genome annotation for The ENCODE Project , 2012, Genome research.
[44] Dmitri D. Pervouchine,et al. The effects of death and post-mortem cold ischemia on human tissue transcriptomes , 2018, Nature Communications.