Gene finding in metatranscriptomic sequences
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Haixu Tang | Yuzhen Ye | Wazim Ismail | Haixu Tang | Yuzhen Ye | W. Ismail
[1] P. Bork,et al. Richness of human gut microbiome correlates with metabolic markers , 2013, Nature.
[2] Z. Su,et al. Directional RNA-seq reveals highly complex condition-dependent transcriptomes in E. coli K12 through accurate full-length transcripts assembling , 2013, BMC Genomics.
[3] Fredrik H. Karlsson,et al. Gut metagenome in European women with normal, impaired and diabetic glucose control , 2013, Nature.
[4] Brian M. Hopkinson,et al. Sizing up metatranscriptomics , 2012, The ISME Journal.
[5] R. Sorek,et al. The excludon: a new concept in bacterial antisense RNA-mediated gene regulation , 2012, Nature Reviews Microbiology.
[6] Qiang Feng,et al. A metagenome-wide association study of gut microbiota in type 2 diabetes , 2012, Nature.
[7] Alexandre B. de Menezes,et al. Comparative metatranscriptomics reveals widespread community responses during phenanthrene degradation in soil. , 2012, Environmental microbiology.
[8] Thomas R. Gingeras,et al. An effort to make sense of antisense transcription in bacteria , 2012, RNA biology.
[9] Katherine H. Huang,et al. A framework for human microbiome research , 2012, Nature.
[10] Katherine H. Huang,et al. Structure, Function and Diversity of the Healthy Human Microbiome , 2012, Nature.
[11] Katherine H. Huang,et al. Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes , 2012, Genome Biology.
[12] Martin Vingron,et al. Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels , 2012, Bioinform..
[13] E. Delong,et al. Transcriptional responses of surface water marine microbial assemblages to deep-sea water amendment. , 2012, Environmental microbiology.
[14] Rohit Ghai,et al. Metagenomics of the Water Column in the Pristine Upper Course of the Amazon River , 2011, PloS one.
[15] N. Friedman,et al. Trinity: reconstructing a full-length transcriptome without a genome from RNA-Seq data , 2011, Nature Biotechnology.
[16] W. Hess,et al. cis-Antisense RNA, Another Level of Gene Regulation in Bacteria , 2011, Microbiology and Molecular Reviews.
[17] D. Lindell,et al. Antisense RNA protects mRNA from RNase E degradation by RNA–RNA duplex formation during phage infection , 2011, Nucleic acids research.
[18] Jack A Gilbert,et al. Gene expression profiling: metatranscriptomics. , 2011, Methods in molecular biology.
[19] Haixu Tang,et al. FragGeneScan: predicting genes in short and error-prone reads , 2010, Nucleic acids research.
[20] Michael P. Barrett,et al. MetExplore: a web server to link metabolomic experiments and genome-scale metabolic networks , 2010, Nucleic Acids Res..
[21] Cole Trapnell,et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. , 2010, Nature biotechnology.
[22] M. Borodovsky,et al. Ab initio gene identification in metagenomic sequences , 2010, Nucleic acids research.
[23] M. Palumbo,et al. Widespread Antisense Transcription in Escherichia coli , 2010, mBio.
[24] P. Bork,et al. A human gut microbial gene catalogue established by metagenomic sequencing , 2010, Nature.
[25] Jörg Vogel,et al. Deep sequencing-based discovery of the Chlamydia trachomatis transcriptome , 2009, Nucleic acids research.
[26] M. Metzker. Sequencing technologies — the next generation , 2010, Nature Reviews Genetics.
[27] Gonçalo R. Abecasis,et al. The Sequence Alignment/Map format and SAMtools , 2009, Bioinform..
[28] Richard Durbin,et al. Sequence analysis Fast and accurate short read alignment with Burrows – Wheeler transform , 2009 .
[29] Edward F. DeLong,et al. The microbial ocean from genomes to biomes , 2009, Nature.
[30] E. Birney,et al. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. , 2008, Genome research.
[31] Julio Collado-Vides,et al. RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions , 2005, Nucleic Acids Res..
[32] L. Øvreås,et al. Microbial diversity and function in soil: from genes to ecosystems. , 2002, Current opinion in microbiology.
[33] G. Church,et al. RNA expression analysis using a 30 base pair resolution Escherichia coli genome array , 2000, Nature Biotechnology.
[34] S. Salzberg,et al. Microbial gene identification using interpolated Markov models. , 1998, Nucleic acids research.
[35] Mark Borodovsky,et al. GENMARK: Parallel Gene Recognition for Both DNA Strands , 1993, Comput. Chem..
[36] T. Itoh,et al. Formation of an RNA primer for initiation of replication of ColE1 DNA by ribonuclease H. , 1980, Proceedings of the National Academy of Sciences of the United States of America.