Fast‐Track Introgression of “QTL‐hotspot” for Root Traits and Other Drought Tolerance Traits in JG 11, an Elite and Leading Variety of Chickpea

A “QTL‐hotspot” containing quantitative trait loci (QTL) for several root and drought tolerance traits was transferred through marker‐assisted backcrossing into JG 11, a leading variety of chickpea (Cicer arietinum L.) in India from the donor parent ICC 4958. Foreground selection with up to three simple sequence repeat markers, namely TAA170, ICCM0249, and STMS11, and background selection with up to 10 amplified fragment length polymorphism primer combinations was undertaken. After undertaking three backcrosses with foreground and background selection and selfing, 29 BC3F2 plants homozygous for two markers (ICCM0249 and TAA170) were selected and referred as introgression lines (ILs). Root trait phenotyping of these ILs showed higher rooting depth (RDp) (average 115.21 ± 2.24 cm) in all 29 ILs, better root length density (RLD) (average 0.41 ± 0.02 cm cm−3) in 26 ILs, and higher root dry weight (RDW) (average 1.25 ± 0.08 g per cylinder) as compared to the recurrent parent, JG 11 (111.70 cm for RDp, 0.39 cm cm−3 for RLD, and 1.10 g per cylinder for RDW), as well as the donor parent, ICC 4958 (114.20 cm for RDp, 0.45 cm cm−3 for RLD, and 1.25 g per cylinder for RDW). These ILs, developed in 3 yr, after multilocation field trials may be released as improved variety with enhanced drought tolerance.

[1]  Malachy T. Campbell,et al.  Introgression of Novel Traits from a Wild Wheat Relative Improves Drought Adaptation in Wheat1[W] , 2013, Plant Physiology.

[2]  R. Chibbar,et al.  Nutritional quality and health benefits of chickpea (Cicer arietinum L.): a review. , 2012, The British journal of nutrition.

[3]  R. Varshney,et al.  Phenotyping Chickpeas and Pigeonpeas for Adaptation to Drought , 2012, Front. Physio..

[4]  G. Kahl,et al.  Novel SSR Markers from BAC-End Sequences, DArT Arrays and a Comprehensive Genetic Map with 1,291 Marker Loci for Chickpea (Cicer arietinum L.) , 2011, PloS one.

[5]  Rajeev K. Varshney,et al.  Integration of novel SSR and gene-based SNP marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome , 2010, Theoretical and Applied Genetics.

[6]  Christopher D Town,et al.  A comprehensive resource of drought- and salinity- responsive ESTs for gene discovery and marker development in chickpea (Cicer arietinum L.) , 2009, BMC Genomics.

[7]  R. Varshney,et al.  AFLP-based molecular characterization of an elite germplasm collection of Jatropha curcas L., a biofuel plant. , 2009, Plant science : an international journal of experimental plant biology.

[8]  R. Varshney,et al.  Isolation and characterization of novel microsatellite markers and their application for diversity assessment in cultivated groundnut (Arachis hypogaea) , 2008, BMC Plant Biology.

[9]  A. Price,et al.  Marker-assisted selection to introgress rice QTLs controlling root traits into an Indian upland rice variety , 2006, Theoretical and Applied Genetics.

[10]  Roberto Tuberosa,et al.  Genomics-based approaches to improve drought tolerance of crops. , 2006, Trends in plant science.

[11]  R. Serraj,et al.  Variability of root length density and its contributions to seed yield in chickpea (Cicer arietinum L.) under terminal drought stress , 2006 .

[12]  S. Chandra,et al.  Genetic variability of drought-avoidance root traits in the mini-core germplasm collection of chickpea (Cicer arietinum L.). , 2006, Euphytica.

[13]  M. Causse,et al.  Marker-assisted introgression of favorable alleles at quantitative trait loci between maize elite lines. , 2002, Genetics.

[14]  Kenneth L. McNally,et al.  Evaluation of near-isogenic lines of rice introgressed with QTLs for root depth through marker-aided selection , 2001, Theoretical and Applied Genetics.

[15]  R. G. Turner Principles of Plant Breeding , 2001 .

[16]  S. Udupa,et al.  Characterization and mapping of sequence-tagged microsatellite sites in the chickpea (Cicer arietinum L.) genome , 1999, Molecular and General Genetics MGG.

[17]  Z. Meral Ozsoyoglu,et al.  Statistical Databases , 1984, VLDB.

[18]  D. S. Virk,et al.  QTLs associated with root traits increase yield in upland rice when transferred through marker-assisted selection , 2012, Theoretical and Applied Genetics.

[19]  R. Varshney,et al.  Genomics and Physiological Approaches for Root Trait Breeding to Improve Drought Tolerance in Chickpea (Cicer arietinum L.) , 2011 .

[20]  P. Bhatnagar-Mathur,et al.  Chickpea (Cicer arietinum L.). , 2006, Methods in molecular biology.

[21]  N. Saxena Management of drought in chickpea - a holistic approach. , 2003 .

[22]  N. Saxena Management of agricultural drought: agronomic and genetic options. , 2003 .