Unveiling the Extracellular Space of the Brain: From Super-resolved Microstructure to In Vivo Function

The extracellular space occupies approximately one-fifth of brain volume, molding a spider web of gaps filled with interstitial fluid and extracellular matrix where neurons and glial cells perform in concert. Yet, very little is known about the spatial organization and dynamics of the extracellular space, let alone its influence on brain function, owing to a lack of appropriate techniques (and a traditional bias toward the inside of cells, not the spaces in between). At the same time, it is clear that understanding fundamental brain functions, such as synaptic transmission, memory, sleep, and recovery from disease, calls for more focused research on the extracellular space of the brain. This review article highlights several key research areas, covering recent methodological and conceptual progress that illuminates this understudied, yet critically important, brain compartment, providing insights into the opportunities and challenges of this nascent field.

[1]  T. Bonhoeffer,et al.  Live-cell imaging of dendritic spines by STED microscopy , 2008, Proceedings of the National Academy of Sciences.

[2]  A. van Harreveld,et al.  The magnitude of the extracellular space in electron micrographs of superficial and deep regions of the cerebral cortex. , 1970, Journal of cell science.

[3]  D. Kleinfeld,et al.  Fluctuations and stimulus-induced changes in blood flow observed in individual capillaries in layers 2 through 4 of rat neocortex. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[4]  U. Nägerl,et al.  Spine neck plasticity regulates compartmentalization of synapses , 2014, Nature Neuroscience.

[5]  Alexander E Dityatev,et al.  Shaping Synapses by the Neural Extracellular Matrix , 2018, Front. Neuroanat..

[6]  D. Rusakov,et al.  Efficient Integration of Synaptic Events by NMDA Receptors in Three-Dimensional Neuropil , 2015, Biophysical journal.

[7]  W. Deen,et al.  Hindrance Factors for Diffusion and Convection in Pores , 2006 .

[8]  Heikki Rauvala,et al.  [The dynamic synapse]. , 2003, Duodecim; laaketieteellinen aikakauskirja.

[9]  F. Simmel,et al.  Single-molecule kinetics and super-resolution microscopy by fluorescence imaging of transient binding on DNA origami. , 2010, Nano letters.

[10]  R. Dingledine,et al.  Regional variation of extracellular space in the hippocampus. , 1990, Science.

[11]  V. C. Moore,et al.  Band Gap Fluorescence from Individual Single-Walled Carbon Nanotubes , 2002, Science.

[12]  J. Lippincott-Schwartz,et al.  Imaging Intracellular Fluorescent Proteins at Nanometer Resolution , 2006, Science.

[13]  Erik De Schutter,et al.  Monte Carlo Methods for Simulating Realistic Synaptic Microphysiology Using MCell , 2000 .

[14]  KM Harris,et al.  Dendritic spines of CA 1 pyramidal cells in the rat hippocampus: serial electron microscopy with reference to their biophysical characteristics , 1989, The Journal of neuroscience : the official journal of the Society for Neuroscience.

[15]  L. Savtchenko,et al.  Central Synapses Release a Resource-Efficient Amount of Glutamate , 2012, Nature Neuroscience.

[16]  D. Rusakov,et al.  Synapses in hippocampus occupy only 1–2% of cell membranes and are spaced less than half-micron apart: a quantitative ultrastructural analysis with discussion of physiological implications , 1998, Neuropharmacology.

[17]  D. Janigro,et al.  The role of brain barriers in fluid movement in the CNS: is there a ‘glymphatic’ system? , 2018, Acta Neuropathologica.

[18]  Thomas A. Blanpied,et al.  A transsynaptic nanocolumn aligns neurotransmitter release to receptors , 2016, Nature.

[19]  C. Nicholson,et al.  Diffusion in brain extracellular space. , 2008, Physiological reviews.

[20]  D. Kullmann,et al.  Geometric and viscous components of the tortuosity of the extracellular space in the brain. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[21]  D. Rusakov,et al.  Receptor actions of synaptically released glutamate: the role of transporters on the scale from nanometers to microns. , 2008, Biophysical journal.

[22]  S. Raghavachari,et al.  Properties of quantal transmission at CA1 synapses. , 2004, Journal of neurophysiology.

[23]  C. Nicholson,et al.  Hindered diffusion of high molecular weight compounds in brain extracellular microenvironment measured with integrative optical imaging. , 1993, Biophysical journal.

[24]  Bernardo L Sabatini,et al.  Live-cell superresolution imaging by pulsed STED two-photon excitation microscopy. , 2013, Biophysical journal.

[25]  A. Triller,et al.  The Dynamic Synapse , 2013, Neuron.

[26]  Philippe Rostaing,et al.  Diffusion Dynamics of Glycine Receptors Revealed by Single-Quantum Dot Tracking , 2003, Science.

[27]  Laurent Cognet,et al.  Single-nanotube tracking reveals the nanoscale organization of the extracellular space in the live brain. , 2017, Nature nanotechnology.

[28]  G. E. Vates,et al.  A Paravascular Pathway Facilitates CSF Flow Through the Brain Parenchyma and the Clearance of Interstitial Solutes, Including Amyloid β , 2012, Science Translational Medicine.

[29]  Charles Nicholson,et al.  Calcium diffusion enhanced after cleavage of negatively charged components of brain extracellular matrix by chondroitinase ABC , 2009, The Journal of physiology.

[30]  J. Siegel,et al.  Time-resolved fluorescence anisotropy imaging applied to live cells. , 2004, Optics letters.

[31]  L. Cognet,et al.  Targeting neurotransmitter receptors with nanoparticles in vivo allows single-molecule tracking in acute brain slices , 2016, Nature Communications.

[32]  Martin J. Booth,et al.  Three-dimensional STED microscopy of aberrating tissue using dual adaptive optics. , 2016, Optics express.

[33]  S. Hrabetova,et al.  Extracellular diffusion in laminar brain structures exemplified by hippocampus , 2012, Journal of Neuroscience Methods.

[34]  Charles Nicholson,et al.  In vivo diffusion analysis with quantum dots and dextrans predicts the width of brain extracellular space. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[35]  U Valentin Nägerl,et al.  Chronic 2P-STED imaging reveals high turnover of dendritic spines in the hippocampus in vivo , 2018, eLife.

[36]  Elizabeth Nance,et al.  A Dense Poly(Ethylene Glycol) Coating Improves Penetration of Large Polymeric Nanoparticles Within Brain Tissue , 2012, Science Translational Medicine.

[37]  L. Cognet,et al.  Comparative Analysis of Photoluminescence and Upconversion Emission from Individual Carbon Nanotubes for Bioimaging Applications , 2018 .

[38]  G. Knott,et al.  Ultrastructural analysis of adult mouse neocortex comparing aldehyde perfusion with cryo fixation , 2015, eLife.

[39]  C. Nicholson,et al.  Real-time Iontophoresis with Tetramethylammonium to Quantify Volume Fraction and Tortuosity of Brain Extracellular Space. , 2017, Journal of visualized experiments : JoVE.

[40]  S. Hrabetova,et al.  Anomalous extracellular diffusion in rat cerebellum. , 2015, Biophysical journal.

[41]  W. Denk,et al.  Targeted patch-clamp recordings and single-cell electroporation of unlabeled neurons in vivo , 2008, Nature Methods.

[42]  P. Gennes Scaling Concepts in Polymer Physics , 1979 .

[43]  D. Rusakov The role of perisynaptic glial sheaths in glutamate spillover and extracellular Ca(2+) depletion. , 2001, Biophysical journal.

[44]  M. Pasquali,et al.  Stable luminescence from individual carbon nanotubes in acidic, basic, and biological environments. , 2008, Journal of the American Chemical Society.

[45]  Zhuang Liu,et al.  A route to brightly fluorescent carbon nanotubes for near-infrared imaging in mice. , 2009, Nature nanotechnology.

[46]  Martin J Booth,et al.  Adaptive optics enables 3D STED microscopy in aberrating specimens. , 2012, Optics express.

[47]  Maiken Nedergaard,et al.  Impairment of Glymphatic Pathway Function Promotes Tau Pathology after Traumatic Brain Injury , 2014, The Journal of Neuroscience.

[48]  Amaia M. Arranz,et al.  Hyaluronan Deficiency Due to Has3 Knock-Out Causes Altered Neuronal Activity and Seizures via Reduction in Brain Extracellular Space , 2014, The Journal of Neuroscience.

[49]  C. Nicholson,et al.  Maximum geometrical hindrance to diffusion in brain extracellular space surrounding uniformly spaced convex cells. , 2004, Journal of theoretical biology.

[50]  D. Choquet,et al.  [Surface mobility of postsynaptic AMPARs tunes synaptic transmission]. , 2008, Medecine sciences : M/S.

[51]  David A. Williams,et al.  Diffusion Dynamics of Glycine Receptors Revealed by Single – Quantum Dot Tracking , 2012 .

[52]  J. Jefferys,et al.  Nonsynaptic modulation of neuronal activity in the brain: electric currents and extracellular ions. , 1995, Physiological reviews.

[53]  B. Toole,et al.  Hyaluronan: from extracellular glue to pericellular cue , 2004, Nature Reviews Cancer.

[54]  Daniel Choquet,et al.  Surface Mobility of Postsynaptic AMPARs Tunes Synaptic Transmission , 2008, Science.

[55]  Roger Y Tsien,et al.  Very long-term memories may be stored in the pattern of holes in the perineuronal net , 2013, Proceedings of the National Academy of Sciences.

[56]  Matteo Pasquali,et al.  Brownian Motion of Stiff Filaments in a Crowded Environment , 2010, Science.

[57]  J. Clements Transmitter timecourse in the synaptic cleft: its role in central synaptic function , 1996, Trends in Neurosciences.

[58]  Marta Miquel,et al.  Casting a Wide Net: Role of Perineuronal Nets in Neural Plasticity , 2016, The Journal of Neuroscience.

[59]  L. Savtchenko,et al.  Moderate AMPA receptor clustering on the nanoscale can efficiently potentiate synaptic current , 2014, Philosophical Transactions of the Royal Society B: Biological Sciences.

[60]  C. Nicholson,et al.  Ion diffusion modified by tortuosity and volume fraction in the extracellular microenvironment of the rat cerebellum. , 1981, The Journal of physiology.

[61]  Michael D. Mason,et al.  Ultra-high resolution imaging by fluorescence photoactivation localization microscopy. , 2006, Biophysical journal.

[62]  L. M. Wahl,et al.  Monte Carlo simulation of fast excitatory synaptic transmission at a hippocampal synapse. , 1996, Journal of neurophysiology.

[63]  W. Deen Hindered transport of large molecules in liquid‐filled pores , 1987 .

[64]  C. Nicholson,et al.  Contribution of dead-space microdomains to tortuosity of brain extracellular space , 2004, Neurochemistry International.

[65]  Amaia M. Arranz,et al.  Brain extracellular space, hyaluronan, and the prevention of epileptic seizures , 2017, Reviews in the neurosciences.

[66]  E. Gouaux,et al.  Dynamic superresolution imaging of endogenous proteins on living cells at ultra-high density. , 2010, Biophysical journal.

[67]  Thomas A. Nielsen,et al.  Modulation of Glutamate Mobility Reveals the Mechanism Underlying Slow-Rising AMPAR EPSCs and the Diffusion Coefficient in the Synaptic Cleft , 2004, Neuron.

[68]  C. Nicholson,et al.  In vivo diffusion of lactoferrin in brain extracellular space is regulated by interactions with heparan sulfate , 2008, Proceedings of the National Academy of Sciences.

[69]  Alexey Pimashkin,et al.  Seizure-like activity in hyaluronidase-treated dissociated hippocampal cultures , 2013, Front. Cell. Neurosci..

[70]  Michael J Rust,et al.  Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM) , 2006, Nature Methods.

[71]  U. Heinemann,et al.  Ionic changes and alterations in the size of the extracellular space during epileptic activity. , 1986, Advances in neurology.

[72]  Josef Spacek,et al.  Extracellular sheets and tunnels modulate glutamate diffusion in hippocampal neuropil , 2013, The Journal of comparative neurology.

[73]  Charles Nicholson,et al.  Ion-selective microelectrodes and diffusion measurements as tools to explore the brain cell microenvironment , 1993, Journal of Neuroscience Methods.

[74]  L. Savtchenko,et al.  Nanoscale diffusion in the synaptic cleft and beyond measured with time-resolved fluorescence anisotropy imaging , 2017, Scientific Reports.

[75]  Alix Le Marois,et al.  Fluorescence lifetime imaging (FLIM): Basic concepts and some recent developments , 2015 .

[76]  A. van Harreveld,et al.  A STUDY OF EXTRACELLULAR SPACE IN CENTRAL NERVOUS TISSUE BY FREEZE-SUBSTITUTION , 1965, The Journal of cell biology.

[77]  G. Hofmeier,et al.  Transient changes in the size of the extracellular space in the sensorimotor cortex of cats in relation to stimulus-induced changes in potassium concentration , 2004, Experimental Brain Research.

[78]  J. Lippincott-Schwartz,et al.  High-density mapping of single-molecule trajectories with photoactivated localization microscopy , 2008, Nature Methods.

[79]  J. Fraser,et al.  Hyaluronan: its nature, distribution, functions and turnover , 1997, Journal of internal medicine.

[80]  M. Heilemann,et al.  Subdiffraction-resolution fluorescence imaging with conventional fluorescent probes. , 2008, Angewandte Chemie.

[81]  C. Nicholson,et al.  Cell cavities increase tortuosity in brain extracellular space. , 2005, Journal of theoretical biology.

[82]  Daniel Choquet,et al.  Direct imaging of lateral movements of AMPA receptors inside synapses , 2003, The EMBO journal.

[83]  Karel Segeth,et al.  A model of effective diffusion and tortuosity in the extracellular space of the brain. , 2004, Biophysical journal.

[84]  Charles Nicholson,et al.  Brain Extracellular Space: The Final Frontier of Neuroscience. , 2017, Biophysical journal.

[85]  Daniel J. R. Christensen,et al.  Sleep Drives Metabolite Clearance from the Adult Brain , 2013, Science.

[86]  J. Sibarita,et al.  Surface Trafficking of Neurotransmitter Receptor: Comparison between Single-Molecule/Quantum Dot Strategies , 2007, The Journal of Neuroscience.

[87]  A. Triller,et al.  The role of receptor diffusion in the organization of the postsynaptic membrane , 2003, Nature Reviews Neuroscience.

[88]  C. Nicholson,et al.  Dead-Space Microdomains Hinder Extracellular Diffusion in Rat Neocortex during Ischemia , 2003, The Journal of Neuroscience.

[89]  J. Tour,et al.  Stepwise Quenching of Exciton Fluorescence in Carbon Nanotubes by Single-Molecule Reactions , 2007, Science.

[90]  U. Nägerl,et al.  Superresolution imaging reveals activity-dependent plasticity of axon morphology linked to changes in action potential conduction velocity , 2017, Proceedings of the National Academy of Sciences.

[91]  Peter Sonderegger,et al.  The dual role of the extracellular matrix in synaptic plasticity and homeostasis , 2010, Nature Reviews Neuroscience.

[92]  Matteo Pasquali,et al.  High-resolution mapping of intracellular fluctuations using carbon nanotubes , 2014, Science.

[93]  Charles Nicholson,et al.  Diffusion of flexible random-coil dextran polymers measured in anisotropic brain extracellular space by integrative optical imaging. , 2008, Biophysical journal.

[94]  P. Gennes Reptation of a Polymer Chain in the Presence of Fixed Obstacles , 1971 .

[95]  U. Valentin Nägerl,et al.  Super-Resolution Imaging of the Extracellular Space in Living Brain Tissue , 2018, Cell.

[96]  S. Bachilo,et al.  Near-infrared fluorescence microscopy of single-walled carbon nanotubes in phagocytic cells. , 2004, Journal of the American Chemical Society.

[97]  D. Rusakov,et al.  Monitoring Nanoscale Mobility of Small Molecules in Organized Brain Tissue with Time-Resolved Fluorescence Anisotropy Imaging , 2014 .

[98]  S. Hrabetova Extracellular diffusion is fast and isotropic in the stratum radiatum of hippocampal CA1 region in rat brain slices , 2005, Hippocampus.

[99]  A Zippelius,et al.  Stochastic model of central synapses: slow diffusion of transmitter interacting with spatially distributed receptors and transporters. , 1999, Journal of theoretical biology.

[100]  U Valentin Nägerl,et al.  Two-photon excitation STED microscopy in two colors in acute brain slices. , 2013, Biophysical journal.