Analyzing Stochastic Computer Models: A Review with Opportunities
暂无分享,去创建一个
Anirban Mondal | Robert B. Gramacy | Vadim Sokolov | David Higdon | Pulong Ma | Leah R. Johnson | Pierre Barbillon | Radu Herbei | Evan Baker | Arindam Fadikar | Bianica Pires | Jerome Sacks | Jiangeng Huang | D. Higdon | J. Sacks | Radu Herbei | L. Johnson | R. Gramacy | Vadim O. Sokolov | P. Barbillon | Anirban Mondal | P. Ma | Jiangeng Huang | Evan Baker | A. Fadikar | Bianica Pires
[1] Michael Frenklach,et al. Comparison of Statistical and Deterministic Frameworks of Uncertainty Quantification , 2016, SIAM/ASA J. Uncertain. Quantification.
[2] Robert B. Gramacy,et al. Ja n 20 08 Bayesian Treed Gaussian Process Models with an Application to Computer Modeling , 2009 .
[3] Vadim Sokolov,et al. Practical Bayesian Optimization for Transportation Simulators , 2018, 1810.03688.
[4] Olivier Roustant,et al. Calculations of Sobol indices for the Gaussian process metamodel , 2008, Reliab. Eng. Syst. Saf..
[5] Merlin Keller,et al. Adaptive Numerical Designs for the Calibration of Computer Codes , 2015, SIAM/ASA J. Uncertain. Quantification.
[6] Rui Tuo,et al. A Theoretical Framework for Calibration in Computer Models: Parametrization, Estimation and Convergence Properties , 2015, SIAM/ASA J. Uncertain. Quantification.
[7] Zoubin Ghahramani,et al. Dropout as a Bayesian Approximation: Representing Model Uncertainty in Deep Learning , 2015, ICML.
[8] James O. Berger,et al. A Framework for Validation of Computer Models , 2007, Technometrics.
[9] V. Roshan Joseph,et al. Composite Gaussian process models for emulating expensive functions , 2012, 1301.2503.
[10] Jakub Szymanik,et al. Methods Results & Discussion , 2007 .
[11] Anthony O'Hagan,et al. Diagnostics for Gaussian Process Emulators , 2009, Technometrics.
[12] Wenjia Wang,et al. Controlling Sources of Inaccuracy in Stochastic Kriging , 2017, Technometrics.
[13] Jenný Brynjarsdóttir,et al. Learning about physical parameters: the importance of model discrepancy , 2014 .
[14] Mike Ludkovski,et al. Replication or Exploration? Sequential Design for Stochastic Simulation Experiments , 2017, Technometrics.
[15] Long Wang,et al. Scaled Gaussian Stochastic Process for Computer Model Calibration and Prediction , 2017, SIAM/ASA J. Uncertain. Quantification.
[16] W. Welch,et al. Fisher information and maximum‐likelihood estimation of covariance parameters in Gaussian stochastic processes , 1998 .
[17] Ian Vernon,et al. Galaxy formation : a Bayesian uncertainty analysis. , 2010 .
[18] L. Mark Berliner,et al. Estimating Ocean Circulation: An MCMC Approach With Approximated Likelihoods via the Bernoulli Factory , 2014 .
[19] P. Burlando,et al. An advanced stochastic weather generator for simulating 2‐D high‐resolution climate variables , 2017 .
[20] Jason L. Loeppky,et al. Batch sequential designs for computer experiments , 2010 .
[21] William J. Welch,et al. Screening the Input Variables to a Computer Model Via Analysis of Variance and Visualization , 2006 .
[22] Barry L. Nelson,et al. Stochastic kriging for simulation metamodeling , 2008, 2008 Winter Simulation Conference.
[23] David S. L. Ramsey,et al. Management of bovine tuberculosis in brushtail possums in New Zealand: predictions from a spatially explicit, individual‐based model , 2010 .
[24] Michael Ludkovski,et al. Evaluating Gaussian process metamodels and sequential designs for noisy level set estimation , 2018, Statistics and Computing.
[25] Jeremy E. Oakley,et al. Calibration of Stochastic Computer Simulators Using Likelihood Emulation , 2017, Technometrics.
[26] D. Higdon,et al. Computer Model Calibration Using High-Dimensional Output , 2008 .
[27] Jeremy E. Oakley,et al. Efficient History Matching of a High Dimensional Individual-Based HIV Transmission Model , 2017, SIAM/ASA J. Uncertain. Quantification.
[28] Wei-Yin Loh,et al. Classification and regression trees , 2011, WIREs Data Mining Knowl. Discov..
[29] H. Rue,et al. INLA goes extreme: Bayesian tail regression for the estimation of high spatio-temporal quantiles , 2018, Extremes.
[30] D. Harville. Matrix Algebra From a Statistician's Perspective , 1998 .
[31] Victor Picheny,et al. Noisy kriging-based optimization methods: A unified implementation within the DiceOptim package , 2014, Comput. Stat. Data Anal..
[32] M. T. Pratola,et al. Heteroscedastic BART via Multiplicative Regression Trees , 2020 .
[33] Jerome Sacks,et al. Choosing the Sample Size of a Computer Experiment: A Practical Guide , 2009, Technometrics.
[34] Bruce E. Ankenman,et al. Sliced Full Factorial-Based Latin Hypercube Designs as a Framework for a Batch Sequential Design Algorithm , 2017, Technometrics.
[35] Yee Whye Teh,et al. Bayesian Learning via Stochastic Gradient Langevin Dynamics , 2011, ICML.
[36] Robert B. Gramacy,et al. Surrogates: Gaussian Process Modeling, Design, and Optimization for the Applied Sciences , 2020 .
[37] Dan Cornford,et al. Bayesian Precalibration of a Large Stochastic Microsimulation Model , 2014, IEEE Transactions on Intelligent Transportation Systems.
[38] R. Gramacy,et al. Categorical Inputs, Sensitivity Analysis, Optimization and Importance Tempering with tgp Version 2, an R Package for Treed Gaussian Process Models , 2010 .
[39] A. Raftery,et al. Inference for Deterministic Simulation Models: The Bayesian Melding Approach , 2000 .
[40] M. Begon. Investigating animal abundance : capture-recapture for biologists , 1979 .
[41] Robert B. Gramacy,et al. Adaptive Design and Analysis of Supercomputer Experiments , 2008, Technometrics.
[42] I. Jolliffe. Principal Component Analysis , 2005 .
[43] T. J. Mitchell,et al. Bayesian Prediction of Deterministic Functions, with Applications to the Design and Analysis of Computer Experiments , 1991 .
[44] Vincent Moutoussamy,et al. Emulators for stochastic simulation codes , 2014, 1406.6348.
[45] Eric Nalisnick,et al. Normalizing Flows for Probabilistic Modeling and Inference , 2019, J. Mach. Learn. Res..
[46] James O. Berger,et al. Automating Emulator Construction for Geophysical Hazard Maps , 2014, SIAM/ASA J. Uncertain. Quantification.
[47] Marc Hélier,et al. Kriging the quantile: application to a simple transmission line model , 2002 .
[48] Dave Higdon,et al. Combining Field Data and Computer Simulations for Calibration and Prediction , 2005, SIAM J. Sci. Comput..
[49] Daniel P Weikel,et al. Phenomenological forecasting of disease incidence using heteroskedastic Gaussian processes: a dengue case study , 2017, 1702.00261.
[50] Jeremy E. Oakley,et al. Bayesian History Matching of Complex Infectious Disease Models Using Emulation: A Tutorial and a Case Study on HIV in Uganda , 2015, PLoS Comput. Biol..
[51] D. Ginsbourger,et al. A benchmark of kriging-based infill criteria for noisy optimization , 2013, Structural and Multidisciplinary Optimization.
[52] Gaël Varoquaux,et al. Scikit-learn: Machine Learning in Python , 2011, J. Mach. Learn. Res..
[53] M. Plumlee. Bayesian Calibration of Inexact Computer Models , 2017 .
[54] C. F. Wu,et al. Efficient Calibration for Imperfect Computer Models , 2015, 1507.07280.
[55] Songhao Wang,et al. Enhancing Response Predictions with a Joint Gaussian Process Model for Stochastic Simulation Models , 2020, ACM Trans. Model. Comput. Simul..
[56] Jian Zhang,et al. Loss Function Approaches to Predict a Spatial Quantile and Its Exceedance Region , 2008, Technometrics.
[57] M. J. Bayarri,et al. Computer model validation with functional output , 2007, 0711.3271.
[58] R. Feynman,et al. Space-Time Approach to Non-Relativistic Quantum Mechanics , 1948 .
[59] Andreas Krause,et al. Information-Theoretic Regret Bounds for Gaussian Process Optimization in the Bandit Setting , 2009, IEEE Transactions on Information Theory.
[60] James O. Berger,et al. Modularization in Bayesian analysis, with emphasis on analysis of computer models , 2009 .
[61] Robert B. Gramacy,et al. Classification and Categorical Inputs with Treed Gaussian Process Models , 2009, J. Classif..
[62] A. O'Hagan,et al. Probabilistic sensitivity analysis of complex models: a Bayesian approach , 2004 .
[63] Montserrat Fuentes,et al. Estimating the Health Impact of Climate Change With Calibrated Climate Model Output , 2012, Journal of Agricultural, Biological, and Environmental Statistics.
[64] Adrian E. Raftery,et al. Probabilistic projections of HIV prevalence using Bayesian melding. , 2007, 0709.0421.
[65] Z. Wang,et al. Extended T-process Regression Models , 2015, 1705.05125.
[66] Jeremy E. Oakley,et al. Multivariate Gaussian Process Emulators With Nonseparable Covariance Structures , 2013, Technometrics.
[67] Peter Challenor,et al. Predicting the Output From a Stochastic Computer Model When a Deterministic Approximation is Available , 2019 .
[68] Adrian E. Raftery,et al. Inference from a Deterministic Population Dynamics Model for Bowhead Whales , 1995 .
[69] Chih-Li Sung,et al. Calibration of computer models with heteroscedastic errors and application to plant relative growth rates , 2019 .
[70] Gonzalo García-Donato,et al. Calibration of computer models with multivariate output , 2012, Comput. Stat. Data Anal..
[71] Robert B. Gramacy,et al. Distance-Distributed Design for Gaussian Process Surrogates , 2018, Technometrics.
[72] M. J. Bayarri,et al. Predicting Vehicle Crashworthiness: Validation of Computer Models for Functional and Hierarchical Data , 2009 .
[73] A. Seheult,et al. Pressure Matching for Hydrocarbon Reservoirs: A Case Study in the Use of Bayes Linear Strategies for Large Computer Experiments , 1997 .
[74] Pulong Ma,et al. Computer Model Emulation with High-Dimensional Functional Output in Large-Scale Observing System Uncertainty Experiments , 2019, Technometrics.
[75] Dan Cornford,et al. Learning Heteroscedastic Gaussian Processes for Complex Datasets , 2009 .
[76] Xi Chen,et al. Stochastic kriging with qualitative factors , 2013, 2013 Winter Simulations Conference (WSC).
[77] Mickaël Binois,et al. Parameter and Uncertainty Estimation for Dynamical Systems Using Surrogate Stochastic Processes , 2018, 1802.00852.
[78] Leah R Johnson,et al. Parameter inference for an individual based model of chytridiomycosis in frogs. , 2010, Journal of theoretical biology.
[79] Montserrat Fuentes,et al. Model Evaluation and Spatial Interpolation by Bayesian Combination of Observations with Outputs from Numerical Models , 2005, Biometrics.
[80] Craig W. Reynolds. Flocks, herds, and schools: a distributed behavioral model , 1987, SIGGRAPH.
[81] Peter I. Frazier,et al. A Tutorial on Bayesian Optimization , 2018, ArXiv.
[82] Madhav V. Marathe,et al. EpiFast: a fast algorithm for large scale realistic epidemic simulations on distributed memory systems , 2009, ICS.
[83] Bruce E. Ankenman,et al. GRADIENT BASED CRITERIA FOR SEQUENTIAL DESIGN , 2018, 2018 Winter Simulation Conference (WSC).
[84] K. Axhausen,et al. Reconstructing the 2003/2004 H3N2 influenza epidemic in Switzerland with a spatially explicit, individual-based model , 2011, BMC infectious diseases.
[85] M. D. McKay,et al. A comparison of three methods for selecting values of input variables in the analysis of output from a computer code , 2000 .
[86] Chiwoo Park,et al. Patchwork Kriging for Large-scale Gaussian Process Regression , 2017, J. Mach. Learn. Res..
[87] Robert B. Gramacy,et al. Optimization Under Unknown Constraints , 2010, 1004.4027.
[88] Thomas J. Santner,et al. Design and analysis of computer experiments , 1998 .
[89] Birgit Müller,et al. A standard protocol for describing individual-based and agent-based models , 2006 .
[90] Roger Woodard,et al. Interpolation of Spatial Data: Some Theory for Kriging , 1999, Technometrics.
[91] Shiyu Zhou,et al. A Simple Approach to Emulation for Computer Models With Qualitative and Quantitative Factors , 2011, Technometrics.
[92] Wei Xie,et al. Asymmetric kriging emulator for stochastic simulation , 2017, 2017 Winter Simulation Conference (WSC).
[93] Leah R. Johnson,et al. Implications of dispersal and life history strategies for the persistence of Linyphiid spider populations , 2009, 0908.2778.
[94] Adrian E. Raftery,et al. Assessing Uncertainty in Urban Simulations Using Bayesian Melding , 2007 .
[95] Bertrand Iooss,et al. Global sensitivity analysis of stochastic computer models with joint metamodels , 2008, Statistics and Computing.
[96] Robert B. Gramacy,et al. tgp: An R Package for Bayesian Nonstationary, Semiparametric Nonlinear Regression and Design by Treed Gaussian Process Models , 2007 .
[97] C. W. Richardson. Stochastic simulation of daily precipitation, temperature, and solar radiation , 1981 .
[98] Mohamed S. Ebeida,et al. VPS: VORONOI PIECEWISE SURROGATE MODELS FOR HIGH-DIMENSIONAL DATA FITTING , 2017 .
[99] François Bachoc,et al. Nested Kriging predictions for datasets with a large number of observations , 2016, Statistics and Computing.
[100] I. Sobol. On the distribution of points in a cube and the approximate evaluation of integrals , 1967 .
[101] Lee W. Schruben,et al. History of improving statistical efficiency , 2017, 2017 Winter Simulation Conference (WSC).
[102] J. Sacks,et al. Predicting Urban Ozone Levels and Trends with Semiparametric Modeling , 1996 .
[103] Victor Picheny,et al. Comparison of Kriging-based algorithms for simulation optimization with heterogeneous noise , 2017, Eur. J. Oper. Res..
[104] Eric Walter,et al. Global optimization based on noisy evaluations: An empirical study of two statistical approaches , 2008 .
[105] James O. Berger,et al. Statistical Inverse Analysis for a Network Microsimulator , 2005, Technometrics.
[106] Robert B. Gramacy,et al. Practical Heteroscedastic Gaussian Process Modeling for Large Simulation Experiments , 2016, Journal of Computational and Graphical Statistics.
[107] Alex Graves,et al. Practical Variational Inference for Neural Networks , 2011, NIPS.
[108] A. Raftery,et al. Strictly Proper Scoring Rules, Prediction, and Estimation , 2007 .
[109] Jerome Sacks,et al. Integrated circuit design optimization using a sequential strategy , 1992, IEEE Trans. Comput. Aided Des. Integr. Circuits Syst..
[110] Donald R. Jones,et al. Efficient Global Optimization of Expensive Black-Box Functions , 1998, J. Glob. Optim..
[111] H. Chipman,et al. BART: Bayesian Additive Regression Trees , 2008, 0806.3286.
[112] Peter Z. G. Qian,et al. Gaussian Process Models for Computer Experiments With Qualitative and Quantitative Factors , 2008, Technometrics.
[113] F. Pukelsheim. The Three Sigma Rule , 1994 .
[114] R. Wilkinson. Approximate Bayesian computation (ABC) gives exact results under the assumption of model error , 2008, Statistical applications in genetics and molecular biology.
[115] M. Kac. On distributions of certain Wiener functionals , 1949 .
[116] Dan Cornford,et al. Optimal design for correlated processes with input-dependent noise , 2014, Comput. Stat. Data Anal..
[117] James M Salter,et al. Uncertainty Quantification for Computer Models With Spatial Output Using Calibration-Optimal Bases , 2018 .
[118] Rui Tuo,et al. Building Accurate Emulators for Stochastic Simulations via Quantile Kriging , 2014, Technometrics.
[119] Darren J. Wilkinson,et al. Bayesian Emulation and Calibration of a Stochastic Computer Model of Mitochondrial DNA Deletions in Substantia Nigra Neurons , 2009 .
[120] Philip J. Radtke,et al. Bayesian melding of a forest ecosystem model with correlated inputs , 2002 .
[121] Ilya M. Sobol,et al. Sensitivity Estimates for Nonlinear Mathematical Models , 1993 .
[122] Jonathan Ozik,et al. MICROSIMULATION MODEL CALIBRATION USING INCREMENTAL MIXTURE APPROXIMATE BAYESIAN COMPUTATION. , 2018, The annals of applied statistics.
[123] Andrew Gordon Wilson,et al. Student-t Processes as Alternatives to Gaussian Processes , 2014, AISTATS.
[124] Youngdeok Hwang,et al. Synthesizing simulation and field data of solar irradiance , 2018, Stat. Anal. Data Min..
[125] Jeremy E. Oakley,et al. Approximate Bayesian Computation and simulation based inference for complex stochastic epidemic models , 2018 .
[126] A. O'Hagan,et al. Bayesian emulation of complex multi-output and dynamic computer models , 2010 .
[127] Madhav Marathe,et al. Calibrating a Stochastic, Agent-Based Model Using Quantile-Based Emulation , 2017, SIAM/ASA J. Uncertain. Quantification.
[128] Geoff K. Nicholls,et al. Statistical inversion of South Atlantic circulation in an abyssal neutral density layer , 2005 .
[129] Noel Cressie,et al. Multivariate Spatial Data Fusion for Very Large Remote Sensing Datasets , 2017, Remote. Sens..
[130] Carl E. Rasmussen,et al. Gaussian processes for machine learning , 2005, Adaptive computation and machine learning.
[131] Luc Pronzato,et al. Design of computer experiments: space filling and beyond , 2011, Statistics and Computing.
[132] Xi Chen,et al. A heteroscedastic T-process simulation metamodeling approach and its application in inventory control and optimization , 2017, 2017 Winter Simulation Conference (WSC).
[133] Wei Chen,et al. A Latent Variable Approach to Gaussian Process Modeling with Qualitative and Quantitative Factors , 2018, Technometrics.