RNA sequencing of transcriptomes in human brain regions: protein-coding and non-coding RNAs, isoforms and alleles
暂无分享,去创建一个
J. Kelsoe | D. Mash | C. Lerman | R. Tyndale | W. Sadee | S. Handelman | G. Rempała | A. Papp | A. Webb | M. Seweryn | Maciej Pietrzak | L. Newman | Amanda Curtis | Daqing Wang | Erica Graziosa
[1] L. Zhang,et al. Prioritizing Genes Related to Nicotine Addiction Via a Multi-source-Based Approach , 2015, Molecular Neurobiology.
[2] Gregory F. Wu,et al. RNA‐sequencing reveals oligodendrocyte and neuronal transcripts in microglia relevant to central nervous system disease , 2015, Glia.
[3] D. Mash,et al. Expression of glutamatergic genes in healthy humans across 16 brain regions; altered expression in the hippocampus after chronic exposure to alcohol or cocaine , 2014, Genes, brain, and behavior.
[4] A. Singleton,et al. Genetic variability in the regulation of gene expression in ten regions of the human brain , 2014, Nature Neuroscience.
[5] S. Dudoit,et al. Normalization of RNA-seq data using factor analysis of control genes or samples , 2014, Nature Biotechnology.
[6] Sheng Li,et al. Multi-platform assessment of transcriptome profiling using RNA-seq in the ABRF next-generation sequencing study , 2014, Nature Biotechnology.
[7] W. Sadee,et al. Missing heritability of common diseases and treatments outside the protein-coding exome , 2014, Human Genetics.
[8] Hongyu Zhao,et al. Differentially co-expressed genes in postmortem prefrontal cortex of individuals with alcohol use disorders: influence on alcohol metabolism-related pathways , 2014, Human Genetics.
[9] Alan N. Simmons,et al. Whole Brain Expression of Bipolar Disorder Associated Genes: Structural and Genetic Analyses , 2014, PloS one.
[10] T. Miyakawa,et al. Transcriptomic evidence for immaturity of the prefrontal cortex in patients with schizophrenia , 2014, Molecular Brain.
[11] Allan R. Jones,et al. Transcriptional Landscape of the Prenatal Human Brain , 2014, Nature.
[12] F. McMahon,et al. RNA-sequencing of the brain transcriptome implicates dysregulation of neuroplasticity, circadian rhythms and GTPase binding in bipolar disorder , 2014, Molecular Psychiatry.
[13] Nuno A. Fonseca,et al. Expression Atlas update—a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments , 2013, Nucleic Acids Res..
[14] Grzegorz A Rempala,et al. Methods for diversity and overlap analysis in T-cell receptor populations , 2012, Journal of Mathematical Biology.
[15] B. Williams,et al. Transcriptional regulation by nicotine in dopaminergic neurons. , 2013, Biochemical Pharmacology.
[16] R. Tyndale,et al. Ethanol self-administration and nicotine treatment induce brain levels of CYP2B6 and CYP2E1 in African green monkeys , 2013, Neuropharmacology.
[17] Ryan M. Smith,et al. Whole transcriptome RNA-Seq allelic expression in human brain , 2013, BMC Genomics.
[18] Lon Phan,et al. Phenotype–Genotype Integrator (PheGenI): synthesizing genome-wide association study (GWAS) data with existing genomic resources , 2013, European Journal of Human Genetics.
[19] Wei Shi,et al. featureCounts: an efficient general purpose program for assigning sequence reads to genomic features , 2013, Bioinform..
[20] J. Parvin,et al. Expression of mRNA transcripts encoding membrane transporters detected with whole transcriptome sequencing of human brain and liver , 2013, Pharmacogenetics and genomics.
[21] S. Lemeshow,et al. Dopamine transporter DAT and receptor DRD2 variants affect risk of lethal cocaine abuse: a gene–gene–environment interaction , 2013, Translational psychiatry.
[22] Lennart Martens,et al. LNCipedia: a database for annotated human lncRNA transcript sequences and structures , 2012, Nucleic Acids Res..
[23] R. Altman,et al. Pharmacogenomics Knowledge for Personalized Medicine , 2012, Clinical pharmacology and therapeutics.
[24] Bronwen L. Aken,et al. GENCODE: The reference human genome annotation for The ENCODE Project , 2012, Genome research.
[25] W. Sadee,et al. Innate Immune Gene Polymorphisms in Tuberculosis , 2012, Infection and Immunity.
[26] Allissa Dillman,et al. Edinburgh Research Explorer Integration of GWAS SNPs and tissue specific expression profiling reveal discrete eQTLs for human traits in blood and brain , 2022 .
[27] S. Nelson,et al. Cell-type–based model explaining coexpression patterns of genes in the brain , 2011, Proceedings of the National Academy of Sciences.
[28] J. Leek,et al. Temporal dynamics and genetic control of transcription in the human prefrontal cortex , 2011, Nature.
[29] Luigi Ferrucci,et al. Abundant Quantitative Trait Loci Exist for DNA Methylation and Gene Expression in Human Brain , 2010, PLoS genetics.
[30] Cole Trapnell,et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. , 2010, Nature biotechnology.
[31] Aaron R. Quinlan,et al. Bioinformatics Applications Note Genome Analysis Bedtools: a Flexible Suite of Utilities for Comparing Genomic Features , 2022 .
[32] Mark D. Robinson,et al. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data , 2009, Bioinform..
[33] Gonçalo R. Abecasis,et al. The Sequence Alignment/Map format and SAMtools , 2009, Bioinform..
[34] Jing Chen,et al. ToppGene Suite for gene list enrichment analysis and candidate gene prioritization , 2009, Nucleic Acids Res..
[35] K. Shianna,et al. Tissue-Specific Genetic Control of Splicing: Implications for the Study of Complex Traits , 2008, PLoS biology.
[36] D. Conti,et al. Nicotinic acetylcholine receptor β2 subunit gene implicated in a systems-based candidate gene study of smoking cessation , 2008, Human molecular genetics.
[37] Leonardo Fazio,et al. Polymorphisms in human dopamine D2 receptor gene affect gene expression, splicing, and neuronal activity during working memory , 2007, Proceedings of the National Academy of Sciences.
[38] Deborah C. Mash,et al. Gene Expression in Human Hippocampus from Cocaine Abusers Identifies Genes which Regulate Extracellular Matrix Remodeling , 2007, PloS one.
[39] C. DeCarli,et al. Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham study , 2007, BMC Medical Genetics.
[40] Sylvie Dussault,et al. Cigarette smoke exposure impairs VEGF-induced endothelial cell migration: role of NO and reactive oxygen species. , 2006, Journal of molecular and cellular cardiology.
[41] G. Lip,et al. Soluble vascular endothelial growth factor, soluble VEGF receptor Flt-1 and endothelial function in healthy smokers. , 2005, International journal of cardiology.
[42] D. Mash,et al. National Association of Medical Examiners position paper on the certification of cocaine-related deaths. , 2004, The American journal of forensic medicine and pathology.
[43] K. Jin,et al. VEGF-induced neuroprotection, neurogenesis, and angiogenesis after focal cerebral ischemia. , 2003, The Journal of clinical investigation.
[44] D. Mash,et al. Dopamine transport function is elevated in cocaine users , 2002, Journal of neurochemistry.
[45] Eden Martin,et al. Integrated whole transcriptome and DNA methylation analysis identifies gene networks specific to late-onset Alzheimer's disease. , 2015, Journal of Alzheimer's disease : JAD.
[46] S. Farris,et al. RNA-Seq reveals novel transcriptional reorganization in human alcoholic brain. , 2014, International review of neurobiology.
[47] Robert W. Williams,et al. Genetics of gene expression in CNS. , 2014, International review of neurobiology.
[48] D. Goldman,et al. Gene expression in the addicted brain. , 2014, International review of neurobiology.
[49] A. Cooper,et al. The central role of noncoding RNA in the brain. , 2014, International review of neurobiology.
[50] Ryan M. Smith,et al. Nicotinic α5 receptor subunit mRNA expression is associated with distant 5′ upstream polymorphisms , 2011, European Journal of Human Genetics.
[51] F. Sun,et al. Molecular and cellular mechanisms of neuroprotection by vascular endothelial growth factor , 2005, Journal of neuroscience research.
[52] H. Edenberg. The Collaborative Study on the Genetics of Alcoholism: An Update , 2002, Alcohol research & health : the journal of the National Institute on Alcohol Abuse and Alcoholism.
[53] G. Lip,et al. Vascular endothelial growth factor and its receptor, Flt-1, in smokers and non-smokers. , 2000, British journal of biomedical science.
[54] Thomas M. Cover,et al. Elements of Information Theory , 2005 .